| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is yfnA [H]
Identifier: 54026824
GI number: 54026824
Start: 5062771
End: 5064258
Strand: Reverse
Name: yfnA [H]
Synonym: nfa48500
Alternate gene names: 54026824
Gene position: 5064258-5062771 (Counterclockwise)
Preceding gene: 54026825
Following gene: 54026821
Centisome position: 84.11
GC content: 68.01
Gene sequence:
>1488_bases ATGGCGATCTCGAGTCCGCGCCGCCGTAGCAGCCTGCTACGTACCAAGTCGGTCGAGCAATCGATCCGCGACACCGACGA ACCCGATTCCAAGCTGCGCAAGGACCTGACCGCCTGGGATCTGACGATCTTCGGTGTCGCGGTCGTCGTCGGCGCCGGCA TCTTCACCCTCACCGCGCGCACCGCGGGCAACGTCGCGGGCCCCTCGGTCTCGCTGGCCTTCGTCTTCGCCGCCATCGCC TGCGGTCTCACCGCGCTCTGCTACGCCGAGTTCGCCTCCACCGTGCCGGTCGCGGGCAGCGCCTACACCTTCTCCTACGC CACCTTCGGCGAGCTGGCCGCCTGGATCATCGGCTGGGACCTGTTCCTGGAATTCGCCCTCGCGGTATCGGTGGTGTCCA AAGGCTGGTCGCAGTACCTCGGCGAGGTACTGAACATCACCCCGATCGTCGACCTCGGCGGGCTCGACTTCGACTGGGGC GCGGTGCTTCTCATCGCCGTGCTGTGTGTGCTGCTGGCGATGGGCACCAAGCTCTCCTCGCGCGTCTCGGCCATCGCGGT CGCGATCAAGCTCGCGGTGATCGCGCTGGTGATCGCCGTCGGCCTCGCCTACTTCGACACCGACAACCTCTCGCCCTACA TCCCGCCGTCGGAGGCAGGCCAGGGCGGCGAGGGCATCCACCAGTCGCTGTTCTCCTACCTGACCGGCGCCGGCAACAGC ACCTTCGGCTGGTACGGCCTGCTCGCCGCCGCCAGCCTGGTGTTCTTCGCGTTCATCGGCTTCGACGTGGTCGCCACCAC CGCCGAGGAGACCAAGAACCCGCAGCGCAACGTGCCCCGCGGTATCCTCGGCTCGCTGGCCGTGGTGACCGTGCTCTACG TCGCCGTCTCCCTGGTGCTCACCGGCATGGTCTCCTACACCGAACTCTCCGGCGAGAACGCCACCCTGGCCACCGCCTTC GGCCTGCACGGCGTCACCTGGGCGGAGAAGATCATCGCCGTCGGCGCCCTGGCCGGTCTCACCACCGTGGTCATGGTGCT CTACCTCGGCCAGACCCGCGTGCTGTTCGCCATGTCCCGCGACGGCCTGCTCCCGCGCCCACTCGCCCACACCGGCCGCC ACGGCACCCCGGTGCGGCTCACCATCATCGTCGGCGTCGCCTGCGCCGTGCTCGCCGGGTTCGTCGACATGGGCGCGCTT GAGGAAATGGTGAACATCGGCACCCTGTTCGCGTTCGTCCTCGTCGCCATCGGCGTCATCATCCTGCGCCGCACCCGCCC CGACCTGCCCCGCGGCTTCCGCGTCCCGCTGGTCCCGCTCGTCCCCATCCTGGCCGTACTCGCCTGCCTGTGGCTGATGG TCAACCTCACCGTCGAAACCTGGATCCGCTTCATCATCTGGATGGCGCTGGGCCTGATCATCTACTTCGCCTACAGCCGC CGGAACTCGTTGCTCGGCAAGGAGGAAGTCAGCCTCCGCAAGGAGTGA
Upstream 100 bases:
>100_bases ACCGGTGCCGTCGCTATTGTGATCGGCCTGATCGTTGCGGCCCTCGGTCCGTGGATCAGCCGTTACATGGCCGGCGTCCA TTAGCAGAAGGAGTGACCAG
Downstream 100 bases:
>100_bases ACGTGCCGCCCCGCGCGGGTGGTGCGGACCGTTCCCGCACCACCCGCCCCGCGCCCGCCGGATTCCGGTACAGCCGTACG ACTCGGTAGTCTGACCCGAA
Product: putative transporter permease
Products: D-glycine [Cytoplasm]; D-alanine [Cytoplasm]; Proton [Cytoplasm]; D-serine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 495; Mature: 494
Protein sequence:
>495_residues MAISSPRRRSSLLRTKSVEQSIRDTDEPDSKLRKDLTAWDLTIFGVAVVVGAGIFTLTARTAGNVAGPSVSLAFVFAAIA CGLTALCYAEFASTVPVAGSAYTFSYATFGELAAWIIGWDLFLEFALAVSVVSKGWSQYLGEVLNITPIVDLGGLDFDWG AVLLIAVLCVLLAMGTKLSSRVSAIAVAIKLAVIALVIAVGLAYFDTDNLSPYIPPSEAGQGGEGIHQSLFSYLTGAGNS TFGWYGLLAAASLVFFAFIGFDVVATTAEETKNPQRNVPRGILGSLAVVTVLYVAVSLVLTGMVSYTELSGENATLATAF GLHGVTWAEKIIAVGALAGLTTVVMVLYLGQTRVLFAMSRDGLLPRPLAHTGRHGTPVRLTIIVGVACAVLAGFVDMGAL EEMVNIGTLFAFVLVAIGVIILRRTRPDLPRGFRVPLVPLVPILAVLACLWLMVNLTVETWIRFIIWMALGLIIYFAYSR RNSLLGKEEVSLRKE
Sequences:
>Translated_495_residues MAISSPRRRSSLLRTKSVEQSIRDTDEPDSKLRKDLTAWDLTIFGVAVVVGAGIFTLTARTAGNVAGPSVSLAFVFAAIA CGLTALCYAEFASTVPVAGSAYTFSYATFGELAAWIIGWDLFLEFALAVSVVSKGWSQYLGEVLNITPIVDLGGLDFDWG AVLLIAVLCVLLAMGTKLSSRVSAIAVAIKLAVIALVIAVGLAYFDTDNLSPYIPPSEAGQGGEGIHQSLFSYLTGAGNS TFGWYGLLAAASLVFFAFIGFDVVATTAEETKNPQRNVPRGILGSLAVVTVLYVAVSLVLTGMVSYTELSGENATLATAF GLHGVTWAEKIIAVGALAGLTTVVMVLYLGQTRVLFAMSRDGLLPRPLAHTGRHGTPVRLTIIVGVACAVLAGFVDMGAL EEMVNIGTLFAFVLVAIGVIILRRTRPDLPRGFRVPLVPLVPILAVLACLWLMVNLTVETWIRFIIWMALGLIIYFAYSR RNSLLGKEEVSLRKE >Mature_494_residues AISSPRRRSSLLRTKSVEQSIRDTDEPDSKLRKDLTAWDLTIFGVAVVVGAGIFTLTARTAGNVAGPSVSLAFVFAAIAC GLTALCYAEFASTVPVAGSAYTFSYATFGELAAWIIGWDLFLEFALAVSVVSKGWSQYLGEVLNITPIVDLGGLDFDWGA VLLIAVLCVLLAMGTKLSSRVSAIAVAIKLAVIALVIAVGLAYFDTDNLSPYIPPSEAGQGGEGIHQSLFSYLTGAGNST FGWYGLLAAASLVFFAFIGFDVVATTAEETKNPQRNVPRGILGSLAVVTVLYVAVSLVLTGMVSYTELSGENATLATAFG LHGVTWAEKIIAVGALAGLTTVVMVLYLGQTRVLFAMSRDGLLPRPLAHTGRHGTPVRLTIIVGVACAVLAGFVDMGALE EMVNIGTLFAFVLVAIGVIILRRTRPDLPRGFRVPLVPLVPILAVLACLWLMVNLTVETWIRFIIWMALGLIIYFAYSRR NSLLGKEEVSLRKE
Specific function: Permease That Is Involved In The Transport Across The Cytoplasmic Membrane Of D-Alanine, D-Serine And Glycine. [C]
COG id: COG0531
COG function: function code E; Amino acid transporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]
Homologues:
Organism=Homo sapiens, GI258645169, Length=417, Percent_Identity=37.410071942446, Blast_Score=225, Evalue=8e-59, Organism=Homo sapiens, GI258614005, Length=418, Percent_Identity=36.3636363636364, Blast_Score=214, Evalue=1e-55, Organism=Homo sapiens, GI258614003, Length=418, Percent_Identity=36.1244019138756, Blast_Score=214, Evalue=1e-55, Organism=Homo sapiens, GI114326544, Length=435, Percent_Identity=35.632183908046, Blast_Score=207, Evalue=1e-53, Organism=Homo sapiens, GI114326550, Length=435, Percent_Identity=35.632183908046, Blast_Score=207, Evalue=1e-53, Organism=Homo sapiens, GI4507047, Length=436, Percent_Identity=34.4036697247706, Blast_Score=206, Evalue=3e-53, Organism=Homo sapiens, GI181337167, Length=457, Percent_Identity=34.3544857768052, Blast_Score=206, Evalue=5e-53, Organism=Homo sapiens, GI110347453, Length=432, Percent_Identity=36.1111111111111, Blast_Score=200, Evalue=3e-51, Organism=Homo sapiens, GI7657683, Length=384, Percent_Identity=25.5208333333333, Blast_Score=97, Evalue=3e-20, Organism=Homo sapiens, GI187423910, Length=498, Percent_Identity=23.2931726907631, Blast_Score=97, Evalue=4e-20, Organism=Homo sapiens, GI7657591, Length=498, Percent_Identity=23.2931726907631, Blast_Score=97, Evalue=4e-20, Organism=Homo sapiens, GI33286428, Length=425, Percent_Identity=27.2941176470588, Blast_Score=88, Evalue=2e-17, Organism=Homo sapiens, GI71979932, Length=488, Percent_Identity=28.4836065573771, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI186910308, Length=470, Percent_Identity=24.0425531914894, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI186910306, Length=470, Percent_Identity=24.0425531914894, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI186910304, Length=470, Percent_Identity=24.0425531914894, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI115648063, Length=470, Percent_Identity=22.3404255319149, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI115648022, Length=470, Percent_Identity=22.3404255319149, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI33286430, Length=220, Percent_Identity=32.2727272727273, Blast_Score=72, Evalue=9e-13, Organism=Homo sapiens, GI9790235, Length=343, Percent_Identity=24.7813411078717, Blast_Score=72, Evalue=2e-12, Organism=Escherichia coli, GI1790653, Length=462, Percent_Identity=23.1601731601732, Blast_Score=92, Evalue=8e-20, Organism=Escherichia coli, GI1786602, Length=421, Percent_Identity=23.5154394299287, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI87081708, Length=489, Percent_Identity=22.0858895705521, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI87081869, Length=452, Percent_Identity=22.1238938053097, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1786789, Length=374, Percent_Identity=22.9946524064171, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1786302, Length=431, Percent_Identity=21.1136890951276, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI87082250, Length=477, Percent_Identity=25.7861635220126, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI48994972, Length=365, Percent_Identity=25.4794520547945, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1786694, Length=424, Percent_Identity=24.5283018867925, Blast_Score=72, Evalue=9e-14, Organism=Escherichia coli, GI1788480, Length=489, Percent_Identity=21.881390593047, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI87081915, Length=456, Percent_Identity=23.2456140350877, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI2367353, Length=351, Percent_Identity=27.9202279202279, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17532491, Length=440, Percent_Identity=34.7727272727273, Blast_Score=224, Evalue=9e-59, Organism=Caenorhabditis elegans, GI17531343, Length=419, Percent_Identity=35.799522673031, Blast_Score=205, Evalue=4e-53, Organism=Caenorhabditis elegans, GI17533459, Length=430, Percent_Identity=35.1162790697674, Blast_Score=201, Evalue=7e-52, Organism=Caenorhabditis elegans, GI17537453, Length=440, Percent_Identity=23.8636363636364, Blast_Score=88, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71993915, Length=427, Percent_Identity=22.9508196721311, Blast_Score=86, Evalue=5e-17, Organism=Caenorhabditis elegans, GI71982612, Length=419, Percent_Identity=23.8663484486874, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71995382, Length=480, Percent_Identity=22.5, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71982608, Length=419, Percent_Identity=23.8663484486874, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71995388, Length=476, Percent_Identity=22.2689075630252, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193208714, Length=452, Percent_Identity=24.3362831858407, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI32566695, Length=452, Percent_Identity=24.3362831858407, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI32566699, Length=376, Percent_Identity=22.8723404255319, Blast_Score=79, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17568033, Length=455, Percent_Identity=22.8571428571429, Blast_Score=76, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17540018, Length=438, Percent_Identity=24.4292237442922, Blast_Score=72, Evalue=7e-13, Organism=Caenorhabditis elegans, GI71982623, Length=262, Percent_Identity=25.1908396946565, Blast_Score=68, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6319542, Length=438, Percent_Identity=22.1461187214612, Blast_Score=66, Evalue=1e-11, Organism=Drosophila melanogaster, GI221512776, Length=432, Percent_Identity=35.4166666666667, Blast_Score=242, Evalue=5e-64, Organism=Drosophila melanogaster, GI24666159, Length=432, Percent_Identity=35.4166666666667, Blast_Score=241, Evalue=6e-64, Organism=Drosophila melanogaster, GI24668806, Length=429, Percent_Identity=35.4312354312354, Blast_Score=234, Evalue=1e-61, Organism=Drosophila melanogaster, GI21356285, Length=429, Percent_Identity=35.4312354312354, Blast_Score=234, Evalue=1e-61, Organism=Drosophila melanogaster, GI24668802, Length=429, Percent_Identity=35.4312354312354, Blast_Score=234, Evalue=1e-61, Organism=Drosophila melanogaster, GI24667468, Length=446, Percent_Identity=36.0986547085202, Blast_Score=224, Evalue=1e-58, Organism=Drosophila melanogaster, GI161077963, Length=452, Percent_Identity=34.9557522123894, Blast_Score=207, Evalue=1e-53, Organism=Drosophila melanogaster, GI281366235, Length=423, Percent_Identity=36.1702127659575, Blast_Score=205, Evalue=7e-53, Organism=Drosophila melanogaster, GI116007820, Length=423, Percent_Identity=36.1702127659575, Blast_Score=205, Evalue=7e-53, Organism=Drosophila melanogaster, GI116007818, Length=423, Percent_Identity=36.6430260047281, Blast_Score=203, Evalue=2e-52, Organism=Drosophila melanogaster, GI85725152, Length=423, Percent_Identity=36.6430260047281, Blast_Score=203, Evalue=2e-52, Organism=Drosophila melanogaster, GI21357367, Length=450, Percent_Identity=23.5555555555556, Blast_Score=105, Evalue=9e-23, Organism=Drosophila melanogaster, GI45550968, Length=483, Percent_Identity=25.879917184265, Blast_Score=89, Evalue=8e-18, Organism=Drosophila melanogaster, GI19921172, Length=483, Percent_Identity=25.879917184265, Blast_Score=89, Evalue=8e-18, Organism=Drosophila melanogaster, GI221331183, Length=440, Percent_Identity=24.5454545454545, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI17647653, Length=440, Percent_Identity=24.5454545454545, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24664379, Length=440, Percent_Identity=24.5454545454545, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24651635, Length=426, Percent_Identity=25.3521126760563, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI24651633, Length=426, Percent_Identity=25.3521126760563, Blast_Score=80, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004841 - InterPro: IPR002293 - InterPro: IPR015606 [H]
Pfam domain/function: PF00324 AA_permease [H]
EC number: NA
Molecular weight: Translated: 52706; Mature: 52574
Theoretical pI: Translated: 7.40; Mature: 7.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAISSPRRRSSLLRTKSVEQSIRDTDEPDSKLRKDLTAWDLTIFGVAVVVGAGIFTLTAR CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEHH TAGNVAGPSVSLAFVFAAIACGLTALCYAEFASTVPVAGSAYTFSYATFGELAAWIIGWD HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHH LFLEFALAVSVVSKGWSQYLGEVLNITPIVDLGGLDFDWGAVLLIAVLCVLLAMGTKLSS HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHH RVSAIAVAIKLAVIALVIAVGLAYFDTDNLSPYIPPSEAGQGGEGIHQSLFSYLTGAGNS HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC TFGWYGLLAAASLVFFAFIGFDVVATTAEETKNPQRNVPRGILGSLAVVTVLYVAVSLVL CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH TGMVSYTELSGENATLATAFGLHGVTWAEKIIAVGALAGLTTVVMVLYLGQTRVLFAMSR HHHHHHHHCCCCCCEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECC DGLLPRPLAHTGRHGTPVRLTIIVGVACAVLAGFVDMGALEEMVNIGTLFAFVLVAIGVI CCCCCCCHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILRRTRPDLPRGFRVPLVPLVPILAVLACLWLMVNLTVETWIRFIIWMALGLIIYFAYSR HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RNSLLGKEEVSLRKE HCCCCCCHHHHCCCC >Mature Secondary Structure AISSPRRRSSLLRTKSVEQSIRDTDEPDSKLRKDLTAWDLTIFGVAVVVGAGIFTLTAR CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEHH TAGNVAGPSVSLAFVFAAIACGLTALCYAEFASTVPVAGSAYTFSYATFGELAAWIIGWD HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHH LFLEFALAVSVVSKGWSQYLGEVLNITPIVDLGGLDFDWGAVLLIAVLCVLLAMGTKLSS HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHH RVSAIAVAIKLAVIALVIAVGLAYFDTDNLSPYIPPSEAGQGGEGIHQSLFSYLTGAGNS HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC TFGWYGLLAAASLVFFAFIGFDVVATTAEETKNPQRNVPRGILGSLAVVTVLYVAVSLVL CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH TGMVSYTELSGENATLATAFGLHGVTWAEKIIAVGALAGLTTVVMVLYLGQTRVLFAMSR HHHHHHHHCCCCCCEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECC DGLLPRPLAHTGRHGTPVRLTIIVGVACAVLAGFVDMGALEEMVNIGTLFAFVLVAIGVI CCCCCCCHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILRRTRPDLPRGFRVPLVPLVPILAVLACLWLMVNLTVETWIRFIIWMALGLIIYFAYSR HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RNSLLGKEEVSLRKE HCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: D-glycine [Periplasm]; D-alanine [Periplasm]; Proton [Periplasm]; D-serine [Periplasm] [C]
Specific reaction: Proton [Periplasm] + D-glycine [Periplasm] = Proton [Cytoplasm] + D-glycine [Cytoplasm] Proton [Periplasm] + D-alanine [Periplasm] = Proton [Cytoplasm] + D-alanine [Cytoplasm] Proton [Periplasm] + D-serine [Periplasm] = Proton [Cytoplasm] + D-serine [Cyto
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9141694; 9384377 [H]