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The map label for this gene is 54026720

Identifier: 54026720

GI number: 54026720

Start: 4957331

End: 4957984

Strand: Reverse

Name: 54026720

Synonym: nfa47460

Alternate gene names: NA

Gene position: 4957984-4957331 (Counterclockwise)

Preceding gene: 54026722

Following gene: 54026717

Centisome position: 82.34

GC content: 69.27

Gene sequence:

>654_bases
ATGGCGAGGTTGACCAAACTGCTCCCGCTGGTCCGCAACAGCGGCCCCGAGGACACCAATCAGAGCCGCGTCCTGGACGC
GGCCCTGCTGGCGTTCCTCGACTTCGGCATCAAGCGGACCAGCATGGTGGAGGTCGCGCGCCGCTGCGGGCTCTCCCTCG
CCACCCTCTACCGGCGCTTCGCCAGCAAGAACGACCTCATCGAGGCCGTCGCGCTGCGCCAGACCCGCGACTTCATCACC
GGGGTCGACGAGGTGCTGGCCCGCCAGGTCGACCGGGACGCGGGTGCCGAGGACCAGATCGTGGAACTGTTCGTCGCCTT
TCTCAAGGGGCTGCGCGAGAACCAGTTGGTGCATCGCCTGCTGGCCACCGAGCCCGAACTGGTGCTGCCCTTCCTCACCG
TGCGCGGCGCCCCGATTATCGAGCTGGGCCGCGACTACCTCTCGGAGTTCATCCGCCGGCTCCAGGACGAGGGCAAACTG
CCGGCCTACGATCCCGAACCGCTGGCCGAGATGATCGCCCGCACCGCGGTCTCGATGGCGCTCACCCCGCAGACGGTCAT
CCCGCTCGGCGACGACGAACAGGCGCGCCGGTTCGCCCGCGACCACGTGGTGGTGTCGTTCCGGGTGCCGCAGGCCGAGG
TCAAGGCCCCGTGA

Upstream 100 bases:

>100_bases
TCTCACCGGCCGTCGCCGCTGTCAACGGCCGGGCGGACGCTGACGGTATGCGATGCTGGCAGTGTCATCGTTTCGCGCAG
GCGGATGAGGTGAGGAAGAC

Downstream 100 bases:

>100_bases
GCATCGTCGGCAGCTCGACCAGCGCGCCGAGGACGTCGGCGGTCTGCTCGTCCGGGCTGCCGTAGGTGTGGGCGGCGACG
GTGAATCCGGGGCCGAAGGA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; Regulatory Protein TetR; Tetr Family Transcriptional Regulator

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MARLTKLLPLVRNSGPEDTNQSRVLDAALLAFLDFGIKRTSMVEVARRCGLSLATLYRRFASKNDLIEAVALRQTRDFIT
GVDEVLARQVDRDAGAEDQIVELFVAFLKGLRENQLVHRLLATEPELVLPFLTVRGAPIIELGRDYLSEFIRRLQDEGKL
PAYDPEPLAEMIARTAVSMALTPQTVIPLGDDEQARRFARDHVVVSFRVPQAEVKAP

Sequences:

>Translated_217_residues
MARLTKLLPLVRNSGPEDTNQSRVLDAALLAFLDFGIKRTSMVEVARRCGLSLATLYRRFASKNDLIEAVALRQTRDFIT
GVDEVLARQVDRDAGAEDQIVELFVAFLKGLRENQLVHRLLATEPELVLPFLTVRGAPIIELGRDYLSEFIRRLQDEGKL
PAYDPEPLAEMIARTAVSMALTPQTVIPLGDDEQARRFARDHVVVSFRVPQAEVKAP
>Mature_216_residues
ARLTKLLPLVRNSGPEDTNQSRVLDAALLAFLDFGIKRTSMVEVARRCGLSLATLYRRFASKNDLIEAVALRQTRDFITG
VDEVLARQVDRDAGAEDQIVELFVAFLKGLRENQLVHRLLATEPELVLPFLTVRGAPIIELGRDYLSEFIRRLQDEGKLP
AYDPEPLAEMIARTAVSMALTPQTVIPLGDDEQARRFARDHVVVSFRVPQAEVKAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24291; Mature: 24160

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLTKLLPLVRNSGPEDTNQSRVLDAALLAFLDFGIKRTSMVEVARRCGLSLATLYRRF
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHH
ASKNDLIEAVALRQTRDFITGVDEVLARQVDRDAGAEDQIVELFVAFLKGLRENQLVHRL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHH
LATEPELVLPFLTVRGAPIIELGRDYLSEFIRRLQDEGKLPAYDPEPLAEMIARTAVSMA
HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
LTPQTVIPLGDDEQARRFARDHVVVSFRVPQAEVKAP
CCCCEEECCCCCHHHHHHHHHCEEEEEECCCHHCCCC
>Mature Secondary Structure 
ARLTKLLPLVRNSGPEDTNQSRVLDAALLAFLDFGIKRTSMVEVARRCGLSLATLYRRF
CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHH
ASKNDLIEAVALRQTRDFITGVDEVLARQVDRDAGAEDQIVELFVAFLKGLRENQLVHRL
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHH
LATEPELVLPFLTVRGAPIIELGRDYLSEFIRRLQDEGKLPAYDPEPLAEMIARTAVSMA
HHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
LTPQTVIPLGDDEQARRFARDHVVVSFRVPQAEVKAP
CCCCEEECCCCCHHHHHHHHHCEEEEEECCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA