Click here to switch to the map view.

The map label for this gene is ifcA [H]

Identifier: 54026632

GI number: 54026632

Start: 4858184

End: 4859653

Strand: Reverse

Name: ifcA [H]

Synonym: nfa46590

Alternate gene names: 54026632

Gene position: 4859653-4858184 (Counterclockwise)

Preceding gene: 54026633

Following gene: 54026631

Centisome position: 80.71

GC content: 71.7

Gene sequence:

>1470_bases
ATGCCCGATGCCAAGTCCATTCGTCCGCTGCGTGCCGCCGAGGTCACCGAGTGGGGCGCCACCGCCGACGTCGTGATCGC
CGGATACGGCATCGCGGGAGTGTGCGCCGCCATCGAGGCCGCGCGCGCCGGGGCGAGCGTGCTGATCCTCGAGCGGACCG
GCGGCTGGGGTGGTGCGGCCGCGATGGCGGGCGGCTTCGTCTATCTCGGCGGCGGCACCCCGTTGCAGCAGGAGCTCGGC
TTCGAGGACACCCCGGAGAACATGGAGAAGTTCCTGGTGGCCGCCCTCGGTCCCGGGGTGGACAAGGCCAAGATCGCCGA
CTACTGCCGCGGTTCGGTGGAGCACTACAACTGGCTGGTGTCGTGCGGGGTGCCGTTCAAGGCCGAGTTCTGGGGCGAGC
CGGGCTGGGAGCCGCCGCACGACGAGGGGCTGATGTATTCCGGCGGTGAGAACGCCGCGCCGTTCAACACCCTCGTGCCG
CCCGCGCCGCGTGGCCATGTGCCGCAGTACTCCGACAAGCGGATCGGCCAGCGCGGCGGCGGATACATGCTGATGAAACC
CTTGGCCGACACCGCGGAATCGCTCGGCGCGCAGGTGCGCTACGACACCAGGATCCGCCGGCTGATCGTCGAGGACGACG
GCCGGGTCGTCGGCATCGCCGCCACGCAGTTCGGCTCCGAGATCTTCGTGCGCGCCGAGCGCGGGGTCGTGCTGGCGACC
GGCAGCTTCGCCTACGCCGACGCGATGGTCGAGGGGTTCGCGCCGCGGCTGATCGGGCGCCCGGCCGCCGCCATCGAGGA
ACACGACGGTATCGGCATCCGCATCGCCCAGGCGCTCGGCGCCGACCTCGCCCACATGGACGCCACCGAGGTCGCCTTCT
TCGCCGACCCGCAGCTGCTGGCCCGCGGCATCCTCGTCAACGGCCGCGGCCAGCGCTACATCCCCGAGGACACCTACCCG
GGCCGGATCGGCCAGGCCACCCTGATCCAACAGGACAACCAGGCCTTCCTGGTGATCGACGAGCAGTCCTACGAGGAAGC
GCTGGGCACCGTCACCGCGACGCCGTTCTTTCGGCAGCCGCCGACCTGGGCCGCCGAATCGGTCGAGGAGCTGGAGGCGG
AGATGGGGCTGCCCGCGGGCGCGCTGCAAGCCACCGTCGACACCTACAACCGGCACGCCGCCGACGGCGCCGACCCGTTG
CTCGGCAAGAAGCCGCAGTGGGTGCGTCCGCTGCGCGGTCCGCTCGCCGGCTTCGACATGCGCAACTTCACCGCGGGCTT
CACCCTCGGCGGCCTGCGCACCGACCTGGACTCGCGGGTCCTGCACGTGTCCGGCGAGCCGATCCCCGGCCTGTTCGCCG
CGGGCCGCTGCACCTCAGGTCTGGCCGCGGGCGGCTACGTCAGCGGTGCTTCCCTGGGCGACGGCAGCTTCTACGGCCGC
CGAGCGGGTGTCGCCGCCGCCAAGAATTGA

Upstream 100 bases:

>100_bases
CAAGCTCGACATGCGCATCGGCGGCGTGGTCGCGCGCTGGCGCAAGGCCGCGACCGCGGCGCAGAGCTGACCGATTCACG
ACGACCCCGAGGAAGCAACC

Downstream 100 bases:

>100_bases
GCACCGCCTGATACTGTCTGGACACATGTCCGAAGGAGAATCCAGGGCGGTCGAGGCGACCAGGCGGCGGCTCAGCGGCA
AGCAGGCCGATACCGTCGAC

Product: hypothetical protein

Products: NA

Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MPDAKSIRPLRAAEVTEWGATADVVIAGYGIAGVCAAIEAARAGASVLILERTGGWGGAAAMAGGFVYLGGGTPLQQELG
FEDTPENMEKFLVAALGPGVDKAKIADYCRGSVEHYNWLVSCGVPFKAEFWGEPGWEPPHDEGLMYSGGENAAPFNTLVP
PAPRGHVPQYSDKRIGQRGGGYMLMKPLADTAESLGAQVRYDTRIRRLIVEDDGRVVGIAATQFGSEIFVRAERGVVLAT
GSFAYADAMVEGFAPRLIGRPAAAIEEHDGIGIRIAQALGADLAHMDATEVAFFADPQLLARGILVNGRGQRYIPEDTYP
GRIGQATLIQQDNQAFLVIDEQSYEEALGTVTATPFFRQPPTWAAESVEELEAEMGLPAGALQATVDTYNRHAADGADPL
LGKKPQWVRPLRGPLAGFDMRNFTAGFTLGGLRTDLDSRVLHVSGEPIPGLFAAGRCTSGLAAGGYVSGASLGDGSFYGR
RAGVAAAKN

Sequences:

>Translated_489_residues
MPDAKSIRPLRAAEVTEWGATADVVIAGYGIAGVCAAIEAARAGASVLILERTGGWGGAAAMAGGFVYLGGGTPLQQELG
FEDTPENMEKFLVAALGPGVDKAKIADYCRGSVEHYNWLVSCGVPFKAEFWGEPGWEPPHDEGLMYSGGENAAPFNTLVP
PAPRGHVPQYSDKRIGQRGGGYMLMKPLADTAESLGAQVRYDTRIRRLIVEDDGRVVGIAATQFGSEIFVRAERGVVLAT
GSFAYADAMVEGFAPRLIGRPAAAIEEHDGIGIRIAQALGADLAHMDATEVAFFADPQLLARGILVNGRGQRYIPEDTYP
GRIGQATLIQQDNQAFLVIDEQSYEEALGTVTATPFFRQPPTWAAESVEELEAEMGLPAGALQATVDTYNRHAADGADPL
LGKKPQWVRPLRGPLAGFDMRNFTAGFTLGGLRTDLDSRVLHVSGEPIPGLFAAGRCTSGLAAGGYVSGASLGDGSFYGR
RAGVAAAKN
>Mature_488_residues
PDAKSIRPLRAAEVTEWGATADVVIAGYGIAGVCAAIEAARAGASVLILERTGGWGGAAAMAGGFVYLGGGTPLQQELGF
EDTPENMEKFLVAALGPGVDKAKIADYCRGSVEHYNWLVSCGVPFKAEFWGEPGWEPPHDEGLMYSGGENAAPFNTLVPP
APRGHVPQYSDKRIGQRGGGYMLMKPLADTAESLGAQVRYDTRIRRLIVEDDGRVVGIAATQFGSEIFVRAERGVVLATG
SFAYADAMVEGFAPRLIGRPAAAIEEHDGIGIRIAQALGADLAHMDATEVAFFADPQLLARGILVNGRGQRYIPEDTYPG
RIGQATLIQQDNQAFLVIDEQSYEEALGTVTATPFFRQPPTWAAESVEELEAEMGLPAGALQATVDTYNRHAADGADPLL
GKKPQWVRPLRGPLAGFDMRNFTAGFTLGGLRTDLDSRVLHVSGEPIPGLFAAGRCTSGLAAGGYVSGASLGDGSFYGRR
AGVAAAKN

Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]

COG id: COG1053

COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cytochrome c domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI71986328, Length=499, Percent_Identity=26.0521042084168, Blast_Score=101, Evalue=9e-22,
Organism=Saccharomyces cerevisiae, GI6320788, Length=500, Percent_Identity=26.6, Blast_Score=100, Evalue=8e-22,
Organism=Saccharomyces cerevisiae, GI6322511, Length=510, Percent_Identity=22.5490196078431, Blast_Score=90, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003953
- InterPro:   IPR013027
- InterPro:   IPR010960
- InterPro:   IPR011031 [H]

Pfam domain/function: PF00890 FAD_binding_2 [H]

EC number: =1.3.99.1 [H]

Molecular weight: Translated: 51613; Mature: 51482

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDAKSIRPLRAAEVTEWGATADVVIAGYGIAGVCAAIEAARAGASVLILERTGGWGGAA
CCCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHH
AMAGGFVYLGGGTPLQQELGFEDTPENMEKFLVAALGPGVDKAKIADYCRGSVEHYNWLV
HHCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEE
SCGVPFKAEFWGEPGWEPPHDEGLMYSGGENAAPFNTLVPPAPRGHVPQYSDKRIGQRGG
ECCCCCCHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
GYMLMKPLADTAESLGAQVRYDTRIRRLIVEDDGRVVGIAATQFGSEIFVRAERGVVLAT
CEEEECCHHHHHHHHCCEEEECCEEEEEEEECCCCEEEEEEHHCCCEEEEEECCCEEEEE
GSFAYADAMVEGFAPRLIGRPAAAIEEHDGIGIRIAQALGADLAHMDATEVAFFADPQLL
CCHHHHHHHHHHCCHHHHCCCHHHHHCCCCCCEEEHHHHCCCHHHCCHHHEEEECCHHHH
ARGILVNGRGQRYIPEDTYPGRIGQATLIQQDNQAFLVIDEQSYEEALGTVTATPFFRQP
HCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCHHHHHCCEECCCCCCCC
PTWAAESVEELEAEMGLPAGALQATVDTYNRHAADGADPLLGKKPQWVRPLRGPLAGFDM
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCHHCCCCCCCCC
RNFTAGFTLGGLRTDLDSRVLHVSGEPIPGLFAAGRCTSGLAAGGYVSGASLGDGSFYGR
CCCCCCEEECCHHCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
RAGVAAAKN
CCCCCCCCC
>Mature Secondary Structure 
PDAKSIRPLRAAEVTEWGATADVVIAGYGIAGVCAAIEAARAGASVLILERTGGWGGAA
CCCCCCCCCHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHH
AMAGGFVYLGGGTPLQQELGFEDTPENMEKFLVAALGPGVDKAKIADYCRGSVEHYNWLV
HHCCCEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEE
SCGVPFKAEFWGEPGWEPPHDEGLMYSGGENAAPFNTLVPPAPRGHVPQYSDKRIGQRGG
ECCCCCCHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
GYMLMKPLADTAESLGAQVRYDTRIRRLIVEDDGRVVGIAATQFGSEIFVRAERGVVLAT
CEEEECCHHHHHHHHCCEEEECCEEEEEEEECCCCEEEEEEHHCCCEEEEEECCCEEEEE
GSFAYADAMVEGFAPRLIGRPAAAIEEHDGIGIRIAQALGADLAHMDATEVAFFADPQLL
CCHHHHHHHHHHCCHHHHCCCHHHHHCCCCCCEEEHHHHCCCHHHCCHHHEEEECCHHHH
ARGILVNGRGQRYIPEDTYPGRIGQATLIQQDNQAFLVIDEQSYEEALGTVTATPFFRQP
HCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCHHHHHCCEECCCCCCCC
PTWAAESVEELEAEMGLPAGALQATVDTYNRHAADGADPLLGKKPQWVRPLRGPLAGFDM
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCHHCCCCCCCCC
RNFTAGFTLGGLRTDLDSRVLHVSGEPIPGLFAAGRCTSGLAAGGYVSGASLGDGSFYGR
CCCCCCEEECCHHCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
RAGVAAAKN
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10455032; 10581549 [H]