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The map label for this gene is 54026631

Identifier: 54026631

GI number: 54026631

Start: 4857580

End: 4858158

Strand: Reverse

Name: 54026631

Synonym: nfa46580

Alternate gene names: NA

Gene position: 4858158-4857580 (Counterclockwise)

Preceding gene: 54026632

Following gene: 54026629

Centisome position: 80.68

GC content: 69.95

Gene sequence:

>579_bases
ATGTCCGAAGGAGAATCCAGGGCGGTCGAGGCGACCAGGCGGCGGCTCAGCGGCAAGCAGGCCGATACCGTCGACAAGCT
GACCAGGGCGGCGGTGGAGGTGCTGTCCCGCGAGGGATTCGCGGGGATGACGATCCGGCTGGTCGCCGCGGCGGCCGGGG
TGGGCACCGCGACGGCCTACACCTATTTCTCCTCCAAGGAACATCTGGTCGCGGAGATCTTCTGGCGCAGGCTGGTGGCC
TCGCCCTCCCCGGCCAGCGACTCCGACGACCCGGTGGCGCGGGTGATCGCCGAGTTGCGCAACATCGCCCTGCTCGTCGC
CGACGAACAGGAACTCTCGGGGGCGGTCACCAGCGCCCTGCTCGGCCGCGATCCCGACGTCGCCCACCTGCGCGACCGGA
TCGGCGCCGAGATCCGCAAACGCATCCTGCGCGCCCTCGGCCCCGATCCGGACCCCGACGTCGTCGAATCCCTCGAACTG
CTCTACGCGGGTGCCCTCGTCCGCGCGGGGATGGGCTACGGCTCCTACTCCCAGATCGCCGACCGCATCGAGAAATCGGC
GCTGATGATCCTGCGGTAG

Upstream 100 bases:

>100_bases
TACGTCAGCGGTGCTTCCCTGGGCGACGGCAGCTTCTACGGCCGCCGAGCGGGTGTCGCCGCCGCCAAGAATTGAGCACC
GCCTGATACTGTCTGGACAC

Downstream 100 bases:

>100_bases
GTCCGGCCGACACGGCCGGCGACCGATCACGCGGACTCCCGCCCGCGGGGGAGCCCGGCCGGGTGCCGCAGCATCAGCAG
GCCGATGGCGGCGACGGCGA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MSEGESRAVEATRRRLSGKQADTVDKLTRAAVEVLSREGFAGMTIRLVAAAAGVGTATAYTYFSSKEHLVAEIFWRRLVA
SPSPASDSDDPVARVIAELRNIALLVADEQELSGAVTSALLGRDPDVAHLRDRIGAEIRKRILRALGPDPDPDVVESLEL
LYAGALVRAGMGYGSYSQIADRIEKSALMILR

Sequences:

>Translated_192_residues
MSEGESRAVEATRRRLSGKQADTVDKLTRAAVEVLSREGFAGMTIRLVAAAAGVGTATAYTYFSSKEHLVAEIFWRRLVA
SPSPASDSDDPVARVIAELRNIALLVADEQELSGAVTSALLGRDPDVAHLRDRIGAEIRKRILRALGPDPDPDVVESLEL
LYAGALVRAGMGYGSYSQIADRIEKSALMILR
>Mature_191_residues
SEGESRAVEATRRRLSGKQADTVDKLTRAAVEVLSREGFAGMTIRLVAAAAGVGTATAYTYFSSKEHLVAEIFWRRLVAS
PSPASDSDDPVARVIAELRNIALLVADEQELSGAVTSALLGRDPDVAHLRDRIGAEIRKRILRALGPDPDPDVVESLELL
YAGALVRAGMGYGSYSQIADRIEKSALMILR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20664; Mature: 20533

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEGESRAVEATRRRLSGKQADTVDKLTRAAVEVLSREGFAGMTIRLVAAAAGVGTATAY
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHH
TYFSSKEHLVAEIFWRRLVASPSPASDSDDPVARVIAELRNIALLVADEQELSGAVTSAL
HHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEEECHHHHHHHHHHHH
LGRDPDVAHLRDRIGAEIRKRILRALGPDPDPDVVESLELLYAGALVRAGMGYGSYSQIA
HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
DRIEKSALMILR
HHHHHHHHHHCC
>Mature Secondary Structure 
SEGESRAVEATRRRLSGKQADTVDKLTRAAVEVLSREGFAGMTIRLVAAAAGVGTATAY
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHH
TYFSSKEHLVAEIFWRRLVASPSPASDSDDPVARVIAELRNIALLVADEQELSGAVTSAL
HHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEEECHHHHHHHHHHHH
LGRDPDVAHLRDRIGAEIRKRILRALGPDPDPDVVESLELLYAGALVRAGMGYGSYSQIA
HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
DRIEKSALMILR
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]