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The map label for this gene is alkB [H]

Identifier: 54026587

GI number: 54026587

Start: 4802587

End: 4803768

Strand: Reverse

Name: alkB [H]

Synonym: nfa46140

Alternate gene names: 54026587

Gene position: 4803768-4802587 (Counterclockwise)

Preceding gene: 54026588

Following gene: 54026586

Centisome position: 79.78

GC content: 63.62

Gene sequence:

>1182_bases
GTGGTTCTTTTTAGCGGGGCAAACGTGCAAACGGATGGCAAATCGGCGACAGTGCCCGATCCCAAACGCCACCTGTGGGT
TCTGGGGTTGATCGCCCCGGCCAGTGCGTTGCTGCCGTCGCAGCTGGTGTTGCGGACGGGGTGGGAGGTGTTCTGGTGGG
TCGGGCCGATCATCGTGTTGGTGATCATTCCGGTCCTGGATTGGCTGGTGGGGGAGGATGGCACGAATCCGCGGGATGAG
GACTACGAGCTGTTGTCCAACGATCGCTACTACCGGTGGTGCACGTATCTGTTCTTGCCGGTGCAGTTGATCGGGTTGGT
GATCGCGGCGGCGATGTGGGCCGGTGACGAGCTGAGTTTTGTCGACAAGCTGGGGTTGGCGACGACGTTGGGGCTGGTCA
GCGGTATCGGTATCAACGCTGCGCACGAGCTGGGGCATCGGGTCGAGCATCTGGAGCGGTGGTTGGCCAAGATCGCGTTG
GCGCAGTCGGCGTATGGTCATTTCTTCGTCGAGCACAACCGTGGTCATCATGTGCGGGTGGCCACTCCTGATGATCCGGC
CAGTGCGCGGTTGGGTGAGTCGTTGTATGAGTTCCTGCCGCGTAGTGTGGCCGGGGGTTTCCGGTCGGCGGTGGCGTTGG
AGTCCGAGCGGTTGGCGCGTAAGGGCAAGCGGTGGTGGAGCCCGCACAATCACATCCTGCAGGCCTGGTCGATGACGGTG
GTGCTGTTCGGTGGGTTGATGCTGGTCTTCGGCTGGCAGATCCTGGGCTGGTTGGTGTTGCAGGCGGTGATCGGTGCGGC
GTTGTTGGAGACGGTCAACTATGTCGAGCACTACGGGCTGCTGCGGGAGCGTCGCCCCGATGGGCGGTGGGCGCGGTGTT
CGCCGCGGGACAGTTGGAACAGTGACCGGCTGGTGACCAACATCTTCCTGTTCCATCTGCAACGCCACAGCGATCATCAC
GCAAACCCGGGTCGTCGCTATCAGACGCTGCGCAGCTGTGATGTAGCTCCGCAGTTGCCGGCGGGGTATGCGAGCATGAT
CGTCTTCGCCGCGATCCCGCCGCTGTGGCGGGCGGTCATGGATCATCGGGTGCTGGCCCACTACGGCGGTGACATCACCC
GCGCCAACATCGTGCCCCGCAAGCGCGCCAGAATCCTCGCCGCCAACGGCCTGCCCGCCTGA

Upstream 100 bases:

>100_bases
GACATACCAACCGTGCGGAATGTAACCGTGGCCACGTTTCAACGGCTGGGAGCGGTGTAACGCCCCTCGACCCTGTAAGT
ATTTTCATACATCGGAGTCA

Downstream 100 bases:

>100_bases
GCGGGCGGGTGGCTCCCGCATGTCCACCGGCGCCGCCGAGGCGACTAGCCTTGCTTGCGAACAGCCGAACCAGGAGAGGC
ATATGACGACCTCAGAACTT

Product: putative alkane-1-monooxygenase

Products: NA

Alternate protein names: Alkane hydroxylase; AHs; Terminal alkane hydroxylase [H]

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MVLFSGANVQTDGKSATVPDPKRHLWVLGLIAPASALLPSQLVLRTGWEVFWWVGPIIVLVIIPVLDWLVGEDGTNPRDE
DYELLSNDRYYRWCTYLFLPVQLIGLVIAAAMWAGDELSFVDKLGLATTLGLVSGIGINAAHELGHRVEHLERWLAKIAL
AQSAYGHFFVEHNRGHHVRVATPDDPASARLGESLYEFLPRSVAGGFRSAVALESERLARKGKRWWSPHNHILQAWSMTV
VLFGGLMLVFGWQILGWLVLQAVIGAALLETVNYVEHYGLLRERRPDGRWARCSPRDSWNSDRLVTNIFLFHLQRHSDHH
ANPGRRYQTLRSCDVAPQLPAGYASMIVFAAIPPLWRAVMDHRVLAHYGGDITRANIVPRKRARILAANGLPA

Sequences:

>Translated_393_residues
MVLFSGANVQTDGKSATVPDPKRHLWVLGLIAPASALLPSQLVLRTGWEVFWWVGPIIVLVIIPVLDWLVGEDGTNPRDE
DYELLSNDRYYRWCTYLFLPVQLIGLVIAAAMWAGDELSFVDKLGLATTLGLVSGIGINAAHELGHRVEHLERWLAKIAL
AQSAYGHFFVEHNRGHHVRVATPDDPASARLGESLYEFLPRSVAGGFRSAVALESERLARKGKRWWSPHNHILQAWSMTV
VLFGGLMLVFGWQILGWLVLQAVIGAALLETVNYVEHYGLLRERRPDGRWARCSPRDSWNSDRLVTNIFLFHLQRHSDHH
ANPGRRYQTLRSCDVAPQLPAGYASMIVFAAIPPLWRAVMDHRVLAHYGGDITRANIVPRKRARILAANGLPA
>Mature_393_residues
MVLFSGANVQTDGKSATVPDPKRHLWVLGLIAPASALLPSQLVLRTGWEVFWWVGPIIVLVIIPVLDWLVGEDGTNPRDE
DYELLSNDRYYRWCTYLFLPVQLIGLVIAAAMWAGDELSFVDKLGLATTLGLVSGIGINAAHELGHRVEHLERWLAKIAL
AQSAYGHFFVEHNRGHHVRVATPDDPASARLGESLYEFLPRSVAGGFRSAVALESERLARKGKRWWSPHNHILQAWSMTV
VLFGGLMLVFGWQILGWLVLQAVIGAALLETVNYVEHYGLLRERRPDGRWARCSPRDSWNSDRLVTNIFLFHLQRHSDHH
ANPGRRYQTLRSCDVAPQLPAGYASMIVFAAIPPLWRAVMDHRVLAHYGGDITRANIVPRKRARILAANGLPA

Specific function: Catalyzes the hydroxylation of n-alkanes in the presence of a NADH-rubredoxin reductase and rubredoxin. It preferably hydroxylases long-chain-length alkanes with at least 12 carbon atoms [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fatty acid desaturase family. AlkB subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: =1.14.15.3 [H]

Molecular weight: Translated: 44031; Mature: 44031

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLFSGANVQTDGKSATVPDPKRHLWVLGLIAPASALLPSQLVLRTGWEVFWWVGPIIVL
CEEECCCCCCCCCCCCCCCCCHHHEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VIIPVLDWLVGEDGTNPRDEDYELLSNDRYYRWCTYLFLPVQLIGLVIAAAMWAGDELSF
HHHHHHHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VDKLGLATTLGLVSGIGINAAHELGHRVEHLERWLAKIALAQSAYGHFFVEHNRGHHVRV
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEE
ATPDDPASARLGESLYEFLPRSVAGGFRSAVALESERLARKGKRWWSPHNHILQAWSMTV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHH
VLFGGLMLVFGWQILGWLVLQAVIGAALLETVNYVEHYGLLRERRPDGRWARCSPRDSWN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
SDRLVTNIFLFHLQRHSDHHANPGRRYQTLRSCDVAPQLPAGYASMIVFAAIPPLWRAVM
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHH
DHRVLAHYGGDITRANIVPRKRARILAANGLPA
HHHHHHHHCCCEEECCCCCHHHHHEEECCCCCC
>Mature Secondary Structure
MVLFSGANVQTDGKSATVPDPKRHLWVLGLIAPASALLPSQLVLRTGWEVFWWVGPIIVL
CEEECCCCCCCCCCCCCCCCCHHHEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VIIPVLDWLVGEDGTNPRDEDYELLSNDRYYRWCTYLFLPVQLIGLVIAAAMWAGDELSF
HHHHHHHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VDKLGLATTLGLVSGIGINAAHELGHRVEHLERWLAKIALAQSAYGHFFVEHNRGHHVRV
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEE
ATPDDPASARLGESLYEFLPRSVAGGFRSAVALESERLARKGKRWWSPHNHILQAWSMTV
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHH
VLFGGLMLVFGWQILGWLVLQAVIGAALLETVNYVEHYGLLRERRPDGRWARCSPRDSWN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
SDRLVTNIFLFHLQRHSDHHANPGRRYQTLRSCDVAPQLPAGYASMIVFAAIPPLWRAVM
CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHH
DHRVLAHYGGDITRANIVPRKRARILAANGLPA
HHHHHHHHCCCEEECCCCCHHHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9546151 [H]