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The map label for this gene is lpqB

Identifier: 54026582

GI number: 54026582

Start: 4795943

End: 4797757

Strand: Reverse

Name: lpqB

Synonym: nfa46090

Alternate gene names: 54026582

Gene position: 4797757-4795943 (Counterclockwise)

Preceding gene: 54026583

Following gene: 54026581

Centisome position: 79.68

GC content: 71.79

Gene sequence:

>1815_bases
ATGACGATGCGTGCTGCCAGGTTGTCCGGATCCACCGGCCTCACCGCGGCGCTGGTCGCGGTGCTGCTGGTGCTCACCGG
GTGCGCGAGCCTGCCCGAGTCGTCGGCGCCGCAGGCGCTGGGCACCATCGATCGCGAGCCGACCAGCGAGGGCCCCACCC
CGCCCATCGCCGGCCGCGATCCCGATCTGCTGTTGCGCGATTTCCTGCAGGCCACGGCCGACCCGACCAACCGGCACCTG
GCCGCGCGCCAGTACATGACGCCCGCGGCCTCGGCGCAGTGGGACGACTCGACCAGCACCACCATCGTGGAGAAGCCCGA
CACGCTGCTCGAATCCCGCGACGGTGACCGGGCCACCTATCGCATCCGGGCGCAGCGGATGGCCGAACTGTCCGCCGACG
GCGCCTACCGCGCGGTCAACGAGCCGACCCTCGAGAACAAGATCGAGATGGTCAAGGTCGACGGGGAGTGGCGGATCGCC
GAACTGCCCGACGGTGTCGTCATGGACATCACCGCGTTCACCAAGTCCTACCGGCGCTACGTGCTGTACTTCGCCGACCC
GTCCGGCAATACCGCGGTACCGGACCTGCGCTGGCTGTCGGTGCCCAAGAACCAGCTCACCCAGCGCCTGCTGTCGCTGC
TGTCGGAGGGGCCGCACGGCGCCATCGGCGCCGTGGTGCGCAACCAGCTGGCCGCGCCCGTGGCCTTGCGCGGACCGATC
ACCAAGGCCAACGGTGACCCGGACGACGTGGGCGTCGGCCTCGGCGGCGTGCGACTGGACTTCGCGGGTGCGGCGGCACT
GAGCCAGCGCGACAAGGAACTGCTCGCCGGCCAGGTGGTGCTCACCCTGGCCCAGGCCGACATCCCCGGCCCCTACATGC
TGCTGGCCGACGGCAGACCGCTGGACGAGCGCTACGCCACCAACGGCTGGTCGGCCGCCGACGTGGAGTACCTCAGCCCC
TCGGTACAGGCGCAGAACCGGATCGGCCTGCACGCGCTGCGCGACGGCGCGCTGACCCAGGTGACCGACAACGGCGTGGT
GGAGACGCCGGGCTACTTCGGGTCGGTGAACAACCTGCAGTCCGCCGCGCTCTCGCCGGACGGTCAGCTCGTCGCCGCGG
TGGCCGATGCGGGCCGCCCCGCGCCGGAACCGCCGCGCACCCTGATGGTCGGCACCTACGGCGGCCCCGCCTTCCCGGTC
GCCGAGGGCGGTAGCATCACCCGCCCGTCGTGGACCGGTGACGGCAGTGCCGCCTGGGCGGTGATCGACGGTGACCGGGT
GATCCGGGCCGTCAACGATCGCGCCACCGGCACGGTGTCGGTGCAGGGCGTCGACATCTCCGGCCTGACCGCGGATCCGG
CCGGACCGGCTCTGCGGCTGCCCATCACCGAGTTGCGCATCTCCCGCACCGGCGTGCGCGCGGCGCTGATCGCCGACGGC
AAGGTCTATGTGGCGGTGGTGGAACGGCGGCCGGACGGCGGTTACGCGCTCACCGCCCCGGTGCCGGTGGCGGTCGGCCT
GAGCACCAAGGCGACCTCGCTGAGCTGGATCGGCGGCGACACCCTGCTCATCGCGCGCGAGGGCAACATCGACCCGGTCT
CGACGGTGCTGATCGACGGCTCGGAATGGACGCCGGTCACCTCGCAGAATCTCACACCGCCGGTGCGGGTCATCACCGCC
GCGCCCGGTGCGCAGTACGTGGCCGATTCCCGCGGCGTGCTCGAACTGACCAGCAACACCACCAGCGAACTGCACTACTG
GACCGAGATGCCCGGCCTCGTCGGCACCGACGCCGCACCCGTCCTGCCCGGCTGA

Upstream 100 bases:

>100_bases
ACGGAGCGGGCTCCGCCGCCGTGTCCGGAGCGCCCGCGGCCGAGCCGGATTCCGGCGGCACCGGCGGCGCGGTGCTCACC
GAACCGGGAGACGAACAGTC

Downstream 100 bases:

>100_bases
TTCCGCCGTGCGCGCGGCTGTGGACAACGGCCGAACTGTGCACAACGCGGTCGTGGCGCGGCGCGGGCAACCGCCGTCCC
GGGCACGCTGGTGCCCATGC

Product: lipoprotein LpqB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 603

Protein sequence:

>604_residues
MTMRAARLSGSTGLTAALVAVLLVLTGCASLPESSAPQALGTIDREPTSEGPTPPIAGRDPDLLLRDFLQATADPTNRHL
AARQYMTPAASAQWDDSTSTTIVEKPDTLLESRDGDRATYRIRAQRMAELSADGAYRAVNEPTLENKIEMVKVDGEWRIA
ELPDGVVMDITAFTKSYRRYVLYFADPSGNTAVPDLRWLSVPKNQLTQRLLSLLSEGPHGAIGAVVRNQLAAPVALRGPI
TKANGDPDDVGVGLGGVRLDFAGAAALSQRDKELLAGQVVLTLAQADIPGPYMLLADGRPLDERYATNGWSAADVEYLSP
SVQAQNRIGLHALRDGALTQVTDNGVVETPGYFGSVNNLQSAALSPDGQLVAAVADAGRPAPEPPRTLMVGTYGGPAFPV
AEGGSITRPSWTGDGSAAWAVIDGDRVIRAVNDRATGTVSVQGVDISGLTADPAGPALRLPITELRISRTGVRAALIADG
KVYVAVVERRPDGGYALTAPVPVAVGLSTKATSLSWIGGDTLLIAREGNIDPVSTVLIDGSEWTPVTSQNLTPPVRVITA
APGAQYVADSRGVLELTSNTTSELHYWTEMPGLVGTDAAPVLPG

Sequences:

>Translated_604_residues
MTMRAARLSGSTGLTAALVAVLLVLTGCASLPESSAPQALGTIDREPTSEGPTPPIAGRDPDLLLRDFLQATADPTNRHL
AARQYMTPAASAQWDDSTSTTIVEKPDTLLESRDGDRATYRIRAQRMAELSADGAYRAVNEPTLENKIEMVKVDGEWRIA
ELPDGVVMDITAFTKSYRRYVLYFADPSGNTAVPDLRWLSVPKNQLTQRLLSLLSEGPHGAIGAVVRNQLAAPVALRGPI
TKANGDPDDVGVGLGGVRLDFAGAAALSQRDKELLAGQVVLTLAQADIPGPYMLLADGRPLDERYATNGWSAADVEYLSP
SVQAQNRIGLHALRDGALTQVTDNGVVETPGYFGSVNNLQSAALSPDGQLVAAVADAGRPAPEPPRTLMVGTYGGPAFPV
AEGGSITRPSWTGDGSAAWAVIDGDRVIRAVNDRATGTVSVQGVDISGLTADPAGPALRLPITELRISRTGVRAALIADG
KVYVAVVERRPDGGYALTAPVPVAVGLSTKATSLSWIGGDTLLIAREGNIDPVSTVLIDGSEWTPVTSQNLTPPVRVITA
APGAQYVADSRGVLELTSNTTSELHYWTEMPGLVGTDAAPVLPG
>Mature_603_residues
TMRAARLSGSTGLTAALVAVLLVLTGCASLPESSAPQALGTIDREPTSEGPTPPIAGRDPDLLLRDFLQATADPTNRHLA
ARQYMTPAASAQWDDSTSTTIVEKPDTLLESRDGDRATYRIRAQRMAELSADGAYRAVNEPTLENKIEMVKVDGEWRIAE
LPDGVVMDITAFTKSYRRYVLYFADPSGNTAVPDLRWLSVPKNQLTQRLLSLLSEGPHGAIGAVVRNQLAAPVALRGPIT
KANGDPDDVGVGLGGVRLDFAGAAALSQRDKELLAGQVVLTLAQADIPGPYMLLADGRPLDERYATNGWSAADVEYLSPS
VQAQNRIGLHALRDGALTQVTDNGVVETPGYFGSVNNLQSAALSPDGQLVAAVADAGRPAPEPPRTLMVGTYGGPAFPVA
EGGSITRPSWTGDGSAAWAVIDGDRVIRAVNDRATGTVSVQGVDISGLTADPAGPALRLPITELRISRTGVRAALIADGK
VYVAVVERRPDGGYALTAPVPVAVGLSTKATSLSWIGGDTLLIAREGNIDPVSTVLIDGSEWTPVTSQNLTPPVRVITAA
PGAQYVADSRGVLELTSNTTSELHYWTEMPGLVGTDAAPVLPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lpqB lipoprotein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LPQB_NOCFA (Q5YQT1)

Other databases:

- EMBL:   AP006618
- RefSeq:   YP_120824.1
- GeneID:   3109292
- GenomeReviews:   AP006618_GR
- KEGG:   nfa:nfa46090
- NMPDR:   fig|247156.1.peg.4434
- HOGENOM:   HBG565340
- OMA:   WREVPGL
- ProtClustDB:   PRK13616
- BioCyc:   NFAR247156:NFA46090-MONOMER
- HAMAP:   MF_01373
- InterPro:   IPR019606
- InterPro:   IPR018910
- SMART:   SM00909

Pfam domain/function: PF10646 Germane; PF10647 Gmad1

EC number: NA

Molecular weight: Translated: 63306; Mature: 63175

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMRAARLSGSTGLTAALVAVLLVLTGCASLPESSAPQALGTIDREPTSEGPTPPIAGRD
CCCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
PDLLLRDFLQATADPTNRHLAARQYMTPAASAQWDDSTSTTIVEKPDTLLESRDGDRATY
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHCCCCCCEEE
RIRAQRMAELSADGAYRAVNEPTLENKIEMVKVDGEWRIAELPDGVVMDITAFTKSYRRY
EEHHHHHHHHCCCCCEECCCCCCCCCCEEEEEECCCEEEEECCCCEEEEHHHHHHCCCEE
VLYFADPSGNTAVPDLRWLSVPKNQLTQRLLSLLSEGPHGAIGAVVRNQLAAPVALRGPI
EEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCC
TKANGDPDDVGVGLGGVRLDFAGAAALSQRDKELLAGQVVLTLAQADIPGPYMLLADGRP
CCCCCCCCHHCCCCCCEEEEECCHHHHHHHHHHHHHCEEEEEEECCCCCCCEEEEECCCC
LDERYATNGWSAADVEYLSPSVQAQNRIGLHALRDGALTQVTDNGVVETPGYFGSVNNLQ
CHHHHCCCCCCCCCHHHCCCCHHHCCCCCCEEECCCCEEEEECCCEEECCCCCCCCCCHH
SAALSPDGQLVAAVADAGRPAPEPPRTLMVGTYGGPAFPVAEGGSITRPSWTGDGSAAWA
HHHCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
VIDGDRVIRAVNDRATGTVSVQGVDISGLTADPAGPALRLPITELRISRTGVRAALIADG
EEECCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEECCHHHEEEECCCCEEEEEECC
KVYVAVVERRPDGGYALTAPVPVAVGLSTKATSLSWIGGDTLLIAREGNIDPVSTVLIDG
EEEEEEEEECCCCCEEEECCCEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECC
SEWTPVTSQNLTPPVRVITAAPGAQYVADSRGVLELTSNTTSELHYWTEMPGLVGTDAAP
CCCCCCCCCCCCCCEEEEEECCCCHHHCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCC
VLPG
CCCC
>Mature Secondary Structure 
TMRAARLSGSTGLTAALVAVLLVLTGCASLPESSAPQALGTIDREPTSEGPTPPIAGRD
CCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
PDLLLRDFLQATADPTNRHLAARQYMTPAASAQWDDSTSTTIVEKPDTLLESRDGDRATY
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHCCCCCCEEE
RIRAQRMAELSADGAYRAVNEPTLENKIEMVKVDGEWRIAELPDGVVMDITAFTKSYRRY
EEHHHHHHHHCCCCCEECCCCCCCCCCEEEEEECCCEEEEECCCCEEEEHHHHHHCCCEE
VLYFADPSGNTAVPDLRWLSVPKNQLTQRLLSLLSEGPHGAIGAVVRNQLAAPVALRGPI
EEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCC
TKANGDPDDVGVGLGGVRLDFAGAAALSQRDKELLAGQVVLTLAQADIPGPYMLLADGRP
CCCCCCCCHHCCCCCCEEEEECCHHHHHHHHHHHHHCEEEEEEECCCCCCCEEEEECCCC
LDERYATNGWSAADVEYLSPSVQAQNRIGLHALRDGALTQVTDNGVVETPGYFGSVNNLQ
CHHHHCCCCCCCCCHHHCCCCHHHCCCCCCEEECCCCEEEEECCCEEECCCCCCCCCCHH
SAALSPDGQLVAAVADAGRPAPEPPRTLMVGTYGGPAFPVAEGGSITRPSWTGDGSAAWA
HHHCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEE
VIDGDRVIRAVNDRATGTVSVQGVDISGLTADPAGPALRLPITELRISRTGVRAALIADG
EEECCEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEECCHHHEEEECCCCEEEEEECC
KVYVAVVERRPDGGYALTAPVPVAVGLSTKATSLSWIGGDTLLIAREGNIDPVSTVLIDG
EEEEEEEEECCCCCEEEECCCEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECC
SEWTPVTSQNLTPPVRVITAAPGAQYVADSRGVLELTSNTTSELHYWTEMPGLVGTDAAP
CCCCCCCCCCCCCCEEEEEECCCCHHHCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCC
VLPG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA