| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026568
Identifier: 54026568
GI number: 54026568
Start: 4777832
End: 4778362
Strand: Reverse
Name: 54026568
Synonym: nfa45950
Alternate gene names: NA
Gene position: 4778362-4777832 (Counterclockwise)
Preceding gene: 54026569
Following gene: 54026566
Centisome position: 79.36
GC content: 56.5
Gene sequence:
>531_bases ATGAGTGATCCGATCGAGCACACAGCAAAATTCAGAATCCCGGCGTCTTTCATCGTCGACTGGGCCCGCTTGACTCCGAG AGAGCTTCATTACGGCTACACCAACCAATGGATATCATCCGCGGATGTGGTCGAGTTGGCGTTGGGGAGTATTGTGCCTT CCGGTTCCAAGATGGGTATCGTGGAGGAGATCTCTCTGCTGCTCTCGGATGAGCTCGATCGGATCCCTGAGCTGATGGAC CAGTTGATCGACCGTGATGACCGCGTGTGGACGTATCTCGCACTCGCTTGGGTTCACGAGAACCAGGAAGAATTCGATGA TCCGTTCAAGACCGTCGATTTGATATTCGCCGACTTCGGTTACCCGCAGGATGTCGGGGAGTTCGTCACCTTCATGCCGC CGCCCCCCGGCGGCGTCCCCGGATACCCGGGCCTTCGTCAACGTTGGAAGGACTATCTCGAACAAAACCGGTCCGAATTC TTCTTGTCGAGAACGCCCGGCGCCCGGAACTACCCTCGGGAAGATACTTAG
Upstream 100 bases:
>100_bases GCGCCGCAGGTCTACTATGACGCGGCCGTCGCGTGCAACAGGGCAGCGGCCGGCTTCATCGGCGCGTTCAGAGGACAATT AACGGGATACCTTCGAAGCC
Downstream 100 bases:
>100_bases TCCGAGGCGAACGCCCACTTGCCGCCACTCTGCTCGGAACTCGAGCACGAGATTGCCGGCACGATGTCGGGCATTGTGCT GTGAGGTCCTGCCGCTGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 176; Mature: 175
Protein sequence:
>176_residues MSDPIEHTAKFRIPASFIVDWARLTPRELHYGYTNQWISSADVVELALGSIVPSGSKMGIVEEISLLLSDELDRIPELMD QLIDRDDRVWTYLALAWVHENQEEFDDPFKTVDLIFADFGYPQDVGEFVTFMPPPPGGVPGYPGLRQRWKDYLEQNRSEF FLSRTPGARNYPREDT
Sequences:
>Translated_176_residues MSDPIEHTAKFRIPASFIVDWARLTPRELHYGYTNQWISSADVVELALGSIVPSGSKMGIVEEISLLLSDELDRIPELMD QLIDRDDRVWTYLALAWVHENQEEFDDPFKTVDLIFADFGYPQDVGEFVTFMPPPPGGVPGYPGLRQRWKDYLEQNRSEF FLSRTPGARNYPREDT >Mature_175_residues SDPIEHTAKFRIPASFIVDWARLTPRELHYGYTNQWISSADVVELALGSIVPSGSKMGIVEEISLLLSDELDRIPELMDQ LIDRDDRVWTYLALAWVHENQEEFDDPFKTVDLIFADFGYPQDVGEFVTFMPPPPGGVPGYPGLRQRWKDYLEQNRSEFF LSRTPGARNYPREDT
Specific function: Unknown
COG id: COG4304
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20284; Mature: 20153
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDPIEHTAKFRIPASFIVDWARLTPRELHYGYTNQWISSADVVELALGSIVPSGSKMGI CCCCHHHHHHCCCCHHHHHHHHHCCHHHHHCCCHHHHHCHHHHHHHHHHHHCCCCCCCCH VEEISLLLSDELDRIPELMDQLIDRDDRVWTYLALAWVHENQEEFDDPFKTVDLIFADFG HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHCCC YPQDVGEFVTFMPPPPGGVPGYPGLRQRWKDYLEQNRSEFFLSRTPGARNYPREDT CCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCC >Mature Secondary Structure SDPIEHTAKFRIPASFIVDWARLTPRELHYGYTNQWISSADVVELALGSIVPSGSKMGI CCCHHHHHHCCCCHHHHHHHHHCCHHHHHCCCHHHHHCHHHHHHHHHHHHCCCCCCCCH VEEISLLLSDELDRIPELMDQLIDRDDRVWTYLALAWVHENQEEFDDPFKTVDLIFADFG HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHCCC YPQDVGEFVTFMPPPPGGVPGYPGLRQRWKDYLEQNRSEFFLSRTPGARNYPREDT CCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA