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The map label for this gene is nudC [H]

Identifier: 54026508

GI number: 54026508

Start: 4708102

End: 4709001

Strand: Reverse

Name: nudC [H]

Synonym: nfa45350

Alternate gene names: 54026508

Gene position: 4709001-4708102 (Counterclockwise)

Preceding gene: 54026509

Following gene: 54026506

Centisome position: 78.21

GC content: 71.56

Gene sequence:

>900_bases
GTGTCGTTCCAACTCAACGGTGTGCCCGTGCTGTCGCGTTTCGCCGGGGATCGGGCGGAGACGCTGCGCTCCGACGAACG
CGCGCTGAAGGAGGGCTGGGCCGAAGCGCTGCTGCTGCGGGTGGACAAGCGCGGGCGGGTCCGGTTCGCCGACGGGGCGC
TCGTCCTCGATCCGGCGGTCGAATTCGCGGCCGAGCCGCACCCCGCCGCGGTGTTCCTCGGCGTCACCGAGGGCAGGCAC
CTGTGGGCGGTGCGCACGGAGGAGCTGTCCGGCCCGCTGACCGATCTGCGGGTCGCGGCGCTGGAACTCGACGATTTCAC
CGCGGGTGTGCTCGCGACCGCGCTCGCCCTGCTGAACTGGCACGACAAGGCGGCCTACAGTGCGCACGACGGCACCGTCA
CGACGGTGTCGCGGGGCGGCTGGTCGCGGTTGACCGAAGCCGGGCAGGAGGAGTTCCCGCGCATCGATCCGGCGGTGATC
TGCCTGATCCACGACGGCGGTGACCGGGTGTTGCTCGGGCGCCAGGCCGTCTGGCCCGCGGGCATGTTCTCGCTGCTGGC
CGGGTTCGTGGAGGTCGGCGAGTCGCTGGAACGCTGCGTCGAGCGCGAGGTGCGCGAGGAGGTCGGCATCGATGTGCGCG
ACATCCACTACCTGGGTAGCCAGCCGTGGCCGTTCCCGCGCTCGCTGATGCTCGGATTCGCCGCGGTGGGCGACCCGGAG
CAGGAGCTGGTGTTCTCCGACGGGGAGATCGCCGAGGCGCACTGGTTCACCCGCGCCGAGGTGCGCGAGGCACTCGAGTT
GGGGGACTGGAGCGCGAAACGGGAGGGCGCGCGGCTGCTGCTGCCCGGCTCGATCTCCATCGCCCGCACCATCGTCGAAT
CCTGGGCGGCGCTGGACTGA

Upstream 100 bases:

>100_bases
TCGACGCCATCGAGGCCGGCGACAAGCTGCTCTACATCCGCCGCGCGGGCAAATGACACACGCCGGGGCGTTCGTCTCCG
GACGGAAGTAGTCTCTAGGC

Downstream 100 bases:

>100_bases
GCCGCCCGCGGCGGACGGCCTCCGACACGGCCGATCCCGCGCGGTGCGGCGCGGGATCGGCCGAGGGGGCTCCGATGGGT
CAGCCGAGGGCGGCGAGCTT

Product: NADH pyrophosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSFQLNGVPVLSRFAGDRAETLRSDERALKEGWAEALLLRVDKRGRVRFADGALVLDPAVEFAAEPHPAAVFLGVTEGRH
LWAVRTEELSGPLTDLRVAALELDDFTAGVLATALALLNWHDKAAYSAHDGTVTTVSRGGWSRLTEAGQEEFPRIDPAVI
CLIHDGGDRVLLGRQAVWPAGMFSLLAGFVEVGESLERCVEREVREEVGIDVRDIHYLGSQPWPFPRSLMLGFAAVGDPE
QELVFSDGEIAEAHWFTRAEVREALELGDWSAKREGARLLLPGSISIARTIVESWAALD

Sequences:

>Translated_299_residues
MSFQLNGVPVLSRFAGDRAETLRSDERALKEGWAEALLLRVDKRGRVRFADGALVLDPAVEFAAEPHPAAVFLGVTEGRH
LWAVRTEELSGPLTDLRVAALELDDFTAGVLATALALLNWHDKAAYSAHDGTVTTVSRGGWSRLTEAGQEEFPRIDPAVI
CLIHDGGDRVLLGRQAVWPAGMFSLLAGFVEVGESLERCVEREVREEVGIDVRDIHYLGSQPWPFPRSLMLGFAAVGDPE
QELVFSDGEIAEAHWFTRAEVREALELGDWSAKREGARLLLPGSISIARTIVESWAALD
>Mature_298_residues
SFQLNGVPVLSRFAGDRAETLRSDERALKEGWAEALLLRVDKRGRVRFADGALVLDPAVEFAAEPHPAAVFLGVTEGRHL
WAVRTEELSGPLTDLRVAALELDDFTAGVLATALALLNWHDKAAYSAHDGTVTTVSRGGWSRLTEAGQEEFPRIDPAVIC
LIHDGGDRVLLGRQAVWPAGMFSLLAGFVEVGESLERCVEREVREEVGIDVRDIHYLGSQPWPFPRSLMLGFAAVGDPEQ
ELVFSDGEIAEAHWFTRAEVREALELGDWSAKREGARLLLPGSISIARTIVESWAALD

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI13899267, Length=211, Percent_Identity=37.4407582938389, Blast_Score=145, Evalue=4e-35,
Organism=Homo sapiens, GI50593112, Length=213, Percent_Identity=37.5586854460094, Blast_Score=138, Evalue=5e-33,
Organism=Escherichia coli, GI48994995, Length=230, Percent_Identity=30.8695652173913, Blast_Score=100, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71986510, Length=186, Percent_Identity=33.8709677419355, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI212645999, Length=186, Percent_Identity=33.8709677419355, Blast_Score=92, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6321371, Length=151, Percent_Identity=33.112582781457, Blast_Score=80, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 32760; Mature: 32629

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFQLNGVPVLSRFAGDRAETLRSDERALKEGWAEALLLRVDKRGRVRFADGALVLDPAV
CCEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCEEECCHH
EFAAEPHPAAVFLGVTEGRHLWAVRTEELSGPLTDLRVAALELDDFTAGVLATALALLNW
HHCCCCCCCEEEEEECCCCEEEEEEHHHHCCCHHHHEEEEEECCCHHHHHHHHHHHHHCC
HDKAAYSAHDGTVTTVSRGGWSRLTEAGQEEFPRIDPAVICLIHDGGDRVLLGRQAVWPA
CCHHCEECCCCEEEEEECCCHHHHHHCCHHHCCCCCCEEEEEEECCCCEEEECCCCCCHH
GMFSLLAGFVEVGESLERCVEREVREEVGIDVRDIHYLGSQPWPFPRSLMLGFAAVGDPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCCHHHHHHHHHCCCCH
QELVFSDGEIAEAHWFTRAEVREALELGDWSAKREGARLLLPGSISIARTIVESWAALD
HHEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SFQLNGVPVLSRFAGDRAETLRSDERALKEGWAEALLLRVDKRGRVRFADGALVLDPAV
CEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEECCCEEECCHH
EFAAEPHPAAVFLGVTEGRHLWAVRTEELSGPLTDLRVAALELDDFTAGVLATALALLNW
HHCCCCCCCEEEEEECCCCEEEEEEHHHHCCCHHHHEEEEEECCCHHHHHHHHHHHHHCC
HDKAAYSAHDGTVTTVSRGGWSRLTEAGQEEFPRIDPAVICLIHDGGDRVLLGRQAVWPA
CCHHCEECCCCEEEEEECCCHHHHHHCCHHHCCCCCCEEEEEEECCCCEEEECCCCCCHH
GMFSLLAGFVEVGESLERCVEREVREEVGIDVRDIHYLGSQPWPFPRSLMLGFAAVGDPE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCCHHHHHHHHHCCCCH
QELVFSDGEIAEAHWFTRAEVREALELGDWSAKREGARLLLPGSISIARTIVESWAALD
HHEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]