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The map label for this gene is ybiO [C]

Identifier: 54026460

GI number: 54026460

Start: 4650245

End: 4651093

Strand: Reverse

Name: ybiO [C]

Synonym: nfa44870

Alternate gene names: 54026460

Gene position: 4651093-4650245 (Counterclockwise)

Preceding gene: 54026461

Following gene: 54026459

Centisome position: 77.24

GC content: 68.9

Gene sequence:

>849_bases
GTGACGGCGCTCGCCTCGGCCGCCGAGAACACGGCCTGGTTGCGTTCCAACGGCCTCGAGATCGTGCTGCTGATCCTCGG
CGCGATGCTGTTCAGCCGGTTCGCGACGTACGTACGCGACCGGATCACCGCGAAGATCGACGCCGGGTTCCGCGGCGGCG
ACGCCCTGGTGCGCACCGAGGCCGCCAAGCATCGGCACGCGCTGGCGCAGGTGCTCACCTGGGTGGTGCTCACCATCGCC
TACGTGCTGGTGGGCATGGAGGTGCTGCAGCGCCTCGGCTTCCAGGTGACCGGCCTGGTCGCGCCCGCGGCCGTGCTCGG
CGCCGCGCTCGGCTTCGGCGCGCAGCGCATCGTGCAGGACATCCTCGCCGGGTTCTTCCTCATCACCGAGCGCCAGTACG
GCTTCGGCGATGTGGTCCGGATCGCGGTCACCGGCTCGGCCGAGATGGCCGAGGGCACGGTCGAGGACGTGACCCTGCGC
ATCACCACGCTGCGCAACGCCGACGGCGAGGTGATCACCGTGCCGAACGGGCAGATCGTGAAAGTGACCAACCTGTCCAA
GGATTGGGCGCGCGCCGCGATCGACGTGCCGGTGGCCGCCAGCGCCGACATCACCCGGGTCAACGAGATCCTGCACAAGG
TAGGCGCCGAGGCCTTCCGTGATCCGCGACTCGAGCCGCTGCTGCTCGACGAGCCGACGGTGATGGGTTTGGACGACCTC
TCGGTGGATCAGATGAACATCAGGATGGTCGCGCGCACATTGCCGGGCAAGCAGTTCGAGGTCGGCCGCGAGCTGCGGGT
CCGGGTGGCCTCGGCACTGCGCCGGGAGGGAATCAGTGAAACTGCGTAA

Upstream 100 bases:

>100_bases
TGACCTCGGATGCCCGCGTGGACGAGTCGCCGCGGCGCGAGCGGGGTAGCCTGTCTGGCGTGTTTGTTCCGGATGGTGTG
ACGCGGCAGCGAGGGGCGCG

Downstream 100 bases:

>100_bases
GAAGACCGAGCTTTTGGACGTGAAGCCCCGCAAGTCGACCGCGATCCTGATCGCGGCCTGGATCGCGACCTTCGTGCTGT
ACGTGTTCGTCAAGCCGGAC

Product: putative transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MTALASAAENTAWLRSNGLEIVLLILGAMLFSRFATYVRDRITAKIDAGFRGGDALVRTEAAKHRHALAQVLTWVVLTIA
YVLVGMEVLQRLGFQVTGLVAPAAVLGAALGFGAQRIVQDILAGFFLITERQYGFGDVVRIAVTGSAEMAEGTVEDVTLR
ITTLRNADGEVITVPNGQIVKVTNLSKDWARAAIDVPVAASADITRVNEILHKVGAEAFRDPRLEPLLLDEPTVMGLDDL
SVDQMNIRMVARTLPGKQFEVGRELRVRVASALRREGISETA

Sequences:

>Translated_282_residues
MTALASAAENTAWLRSNGLEIVLLILGAMLFSRFATYVRDRITAKIDAGFRGGDALVRTEAAKHRHALAQVLTWVVLTIA
YVLVGMEVLQRLGFQVTGLVAPAAVLGAALGFGAQRIVQDILAGFFLITERQYGFGDVVRIAVTGSAEMAEGTVEDVTLR
ITTLRNADGEVITVPNGQIVKVTNLSKDWARAAIDVPVAASADITRVNEILHKVGAEAFRDPRLEPLLLDEPTVMGLDDL
SVDQMNIRMVARTLPGKQFEVGRELRVRVASALRREGISETA
>Mature_281_residues
TALASAAENTAWLRSNGLEIVLLILGAMLFSRFATYVRDRITAKIDAGFRGGDALVRTEAAKHRHALAQVLTWVVLTIAY
VLVGMEVLQRLGFQVTGLVAPAAVLGAALGFGAQRIVQDILAGFFLITERQYGFGDVVRIAVTGSAEMAEGTVEDVTLRI
TTLRNADGEVITVPNGQIVKVTNLSKDWARAAIDVPVAASADITRVNEILHKVGAEAFRDPRLEPLLLDEPTVMGLDDLS
VDQMNIRMVARTLPGKQFEVGRELRVRVASALRREGISETA

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081787, Length=257, Percent_Identity=26.4591439688716, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR006685 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 30475; Mature: 30344

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALASAAENTAWLRSNGLEIVLLILGAMLFSRFATYVRDRITAKIDAGFRGGDALVRTE
CCCCHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHH
AAKHRHALAQVLTWVVLTIAYVLVGMEVLQRLGFQVTGLVAPAAVLGAALGFGAQRIVQD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHCCCHHHHHHH
ILAGFFLITERQYGFGDVVRIAVTGSAEMAEGTVEDVTLRITTLRNADGEVITVPNGQIV
HHHHHHHHCCCCCCCCCEEEEEEECCHHHHCCCHHHEEEEEEEEECCCCCEEECCCCCEE
KVTNLSKDWARAAIDVPVAASADITRVNEILHKVGAEAFRDPRLEPLLLDEPTVMGLDDL
EEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHCCCCCCCEEECCCCEECCCCC
SVDQMNIRMVARTLPGKQFEVGRELRVRVASALRREGISETA
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TALASAAENTAWLRSNGLEIVLLILGAMLFSRFATYVRDRITAKIDAGFRGGDALVRTE
CCCHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHH
AAKHRHALAQVLTWVVLTIAYVLVGMEVLQRLGFQVTGLVAPAAVLGAALGFGAQRIVQD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHCCCHHHHHHH
ILAGFFLITERQYGFGDVVRIAVTGSAEMAEGTVEDVTLRITTLRNADGEVITVPNGQIV
HHHHHHHHCCCCCCCCCEEEEEEECCHHHHCCCHHHEEEEEEEEECCCCCEEECCCCCEE
KVTNLSKDWARAAIDVPVAASADITRVNEILHKVGAEAFRDPRLEPLLLDEPTVMGLDDL
EEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHCCCCCCCEEECCCCEECCCCC
SVDQMNIRMVARTLPGKQFEVGRELRVRVASALRREGISETA
CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12948626; 8366043 [H]