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The map label for this gene is 54026284

Identifier: 54026284

GI number: 54026284

Start: 4471197

End: 4472429

Strand: Reverse

Name: 54026284

Synonym: nfa43130

Alternate gene names: NA

Gene position: 4472429-4471197 (Counterclockwise)

Preceding gene: 54026285

Following gene: 54026281

Centisome position: 74.28

GC content: 76.56

Gene sequence:

>1233_bases
GTGGCGGGCCCGGCGGTCGACGCGGTCTACCGCGCCGAGTTCGGGCGGGCCCTGGCCACCGTCGCCCGGCTGGTGGGCGA
TATCGCCGCCGCCGAGGACGCCGTACAGGAGGCCTTCGCCGAGGCGTTGCGCACCTGGCCCGCCCGCGGCACACCCGCCA
ACCCGGGCGCCTGGATCACCACCGTCGCCCGCAACCGGGCGCTGGACCGGTTGCGGCGCGAGGCCACCCGCGCCGACCGG
GAGGTCGAAGCGGCGCGGGTGCGTCCGCCGGACGAACCGCAGGAGGTGACCCCGGTGCCCGACGACCAGTTGCGGATGAT
CTTCACCTGCTGCCACCCGGCGCTGTCGAGCGAATCCCAGGTGGCCCTCACCCTGCGCCTGGTCTGCGGGCTGCGCACGA
GCGAGATCGCGCGCGCCTTCCTGCAATCGGAACACACCGTGGCCCAACGGCTCTCCCGGGCCAAGGCGAAGATCCGCCGG
GCCGCCATCCCGTTGCGCGTGCCGCCGCCACACCTGCTGCCCGAGCGGCTGCCCGGCGTGCTGGCCTGCGTCTACCTGGT
CTTCACCGAGGGCTACTCGGCCACCGGCGGCCCGGCGGCGGTGCGGGCGGAGCTCTGCGACGAGGCGATCCGGCTGGGCA
GGCTGTTGTGCGCCCTGCTGCCCGCCGAGCCGGAAGCCCGCGCCCTGCTCGCGCTCATGCTGCTGCACGACAGCAGACGC
GGGCAGCGCCGCAGCCCGGACGGCGCGGCCGTGCCGCTGGAGGAACAGGACCGCGGGGGCTGGAACCGCGCGGCCATCGC
CGAGGGCCGGGCGCTGCTGGCCGACCTCGCCGACGCGCGCGGGCCCTATCTCGCGCAGGCGCGCATCGCCGCCGCGCACG
CGAGCGCCCCGGACTGGTCCACGACCGACTGGGCGCGGGTGGTGGCGGGCTACGACGAACTGCTGCGGTACTCCGCGTCC
CCGGTGGTGCGGCTCAACCGCGCGGTCGCCCTCGGTTTCCTGGCCGGGTTCGACGCCGGGCTGGCCGCGATCGACGAGAT
CGCCGGGCATCCCCGGCTCGCGGCCACGCACATGGTCGCCGCGAGCCGCGCCGACCTGCTGCGCCGGGCCGGGCGGCCAC
GGGAGGCCGCCGAGCAGTACCGGATCGCGCTCGACCGCGCGGGCAACGACGAGACCCGCGCGTTCCTGGCCCGCCGGCTA
CGGGAGGTGCAGACCGCGCTCAGCGGCGGGTGA

Upstream 100 bases:

>100_bases
GCCCCGGACCGGGCCACCGCCGCCGAGATCGCCGCGCAGATCCCGCTCGGCGAGCGCGGACACACCGAGGTGCGCCCGAT
CGTCCACCTGGGGCAGTGAG

Downstream 100 bases:

>100_bases
CGCCGCTGTAATTCAGCGCCACCAGGAATCGAGCGGCGAGACGGGCACGGTGCGCTTGTGCCGAGTGGCGGTGTAGAGCT
GCTCGACCCGTGCGGCCACC

Product: putative sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MAGPAVDAVYRAEFGRALATVARLVGDIAAAEDAVQEAFAEALRTWPARGTPANPGAWITTVARNRALDRLRREATRADR
EVEAARVRPPDEPQEVTPVPDDQLRMIFTCCHPALSSESQVALTLRLVCGLRTSEIARAFLQSEHTVAQRLSRAKAKIRR
AAIPLRVPPPHLLPERLPGVLACVYLVFTEGYSATGGPAAVRAELCDEAIRLGRLLCALLPAEPEARALLALMLLHDSRR
GQRRSPDGAAVPLEEQDRGGWNRAAIAEGRALLADLADARGPYLAQARIAAAHASAPDWSTTDWARVVAGYDELLRYSAS
PVVRLNRAVALGFLAGFDAGLAAIDEIAGHPRLAATHMVAASRADLLRRAGRPREAAEQYRIALDRAGNDETRAFLARRL
REVQTALSGG

Sequences:

>Translated_410_residues
MAGPAVDAVYRAEFGRALATVARLVGDIAAAEDAVQEAFAEALRTWPARGTPANPGAWITTVARNRALDRLRREATRADR
EVEAARVRPPDEPQEVTPVPDDQLRMIFTCCHPALSSESQVALTLRLVCGLRTSEIARAFLQSEHTVAQRLSRAKAKIRR
AAIPLRVPPPHLLPERLPGVLACVYLVFTEGYSATGGPAAVRAELCDEAIRLGRLLCALLPAEPEARALLALMLLHDSRR
GQRRSPDGAAVPLEEQDRGGWNRAAIAEGRALLADLADARGPYLAQARIAAAHASAPDWSTTDWARVVAGYDELLRYSAS
PVVRLNRAVALGFLAGFDAGLAAIDEIAGHPRLAATHMVAASRADLLRRAGRPREAAEQYRIALDRAGNDETRAFLARRL
REVQTALSGG
>Mature_409_residues
AGPAVDAVYRAEFGRALATVARLVGDIAAAEDAVQEAFAEALRTWPARGTPANPGAWITTVARNRALDRLRREATRADRE
VEAARVRPPDEPQEVTPVPDDQLRMIFTCCHPALSSESQVALTLRLVCGLRTSEIARAFLQSEHTVAQRLSRAKAKIRRA
AIPLRVPPPHLLPERLPGVLACVYLVFTEGYSATGGPAAVRAELCDEAIRLGRLLCALLPAEPEARALLALMLLHDSRRG
QRRSPDGAAVPLEEQDRGGWNRAAIAEGRALLADLADARGPYLAQARIAAAHASAPDWSTTDWARVVAGYDELLRYSASP
VVRLNRAVALGFLAGFDAGLAAIDEIAGHPRLAATHMVAASRADLLRRAGRPREAAEQYRIALDRAGNDETRAFLARRLR
EVQTALSGG

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 44235; Mature: 44104

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGPAVDAVYRAEFGRALATVARLVGDIAAAEDAVQEAFAEALRTWPARGTPANPGAWIT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
TVARNRALDRLRREATRADREVEAARVRPPDEPQEVTPVPDDQLRMIFTCCHPALSSESQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCH
VALTLRLVCGLRTSEIARAFLQSEHTVAQRLSRAKAKIRRAAIPLRVPPPHLLPERLPGV
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LACVYLVFTEGYSATGGPAAVRAELCDEAIRLGRLLCALLPAEPEARALLALMLLHDSRR
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
GQRRSPDGAAVPLEEQDRGGWNRAAIAEGRALLADLADARGPYLAQARIAAAHASAPDWS
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
TTDWARVVAGYDELLRYSASPVVRLNRAVALGFLAGFDAGLAAIDEIAGHPRLAATHMVA
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
ASRADLLRRAGRPREAAEQYRIALDRAGNDETRAFLARRLREVQTALSGG
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AGPAVDAVYRAEFGRALATVARLVGDIAAAEDAVQEAFAEALRTWPARGTPANPGAWIT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
TVARNRALDRLRREATRADREVEAARVRPPDEPQEVTPVPDDQLRMIFTCCHPALSSESQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHCCCCH
VALTLRLVCGLRTSEIARAFLQSEHTVAQRLSRAKAKIRRAAIPLRVPPPHLLPERLPGV
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LACVYLVFTEGYSATGGPAAVRAELCDEAIRLGRLLCALLPAEPEARALLALMLLHDSRR
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
GQRRSPDGAAVPLEEQDRGGWNRAAIAEGRALLADLADARGPYLAQARIAAAHASAPDWS
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
TTDWARVVAGYDELLRYSASPVVRLNRAVALGFLAGFDAGLAAIDEIAGHPRLAATHMVA
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
ASRADLLRRAGRPREAAEQYRIALDRAGNDETRAFLARRLREVQTALSGG
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]