| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54026272
Identifier: 54026272
GI number: 54026272
Start: 4457362
End: 4458726
Strand: Reverse
Name: 54026272
Synonym: nfa43010
Alternate gene names: NA
Gene position: 4458726-4457362 (Counterclockwise)
Preceding gene: 54026278
Following gene: 54026270
Centisome position: 74.05
GC content: 69.52
Gene sequence:
>1365_bases ATGTCGCAGATCGATCTCATCGAAGCACGCCCGGTTCCGGCCGAATCGCTGCCGGAATTCGTCGCCGACCACCGCGTCGA CGCCGCGCTGGACTGGCTGGACAACCATCCGCCGCACCTGATCGCCGACCAACTCGCCCGCATGGACGCCGTCCAGGCAG GCGTGGCGTTCCGGCTGCTGGACAAGGATCAGGCGCTGGCGGTGTTCGAGGAACTCGAACCGGTCGACCAGCAGCAGATC CTGCAGGGCTTGCGGGATCAGAGTTTCCGCGAGCTGGTGGAAGGGATGGCGCCCGACGACCGCGCCCGCATGCTGCGCGA GGCGCCGGCCAAGGTCGCCAAGAAGGTGCTGGCCGGGCTCAGCCCGCGGGAACGGCGGATGACGGCGAGTTTGCTGGGGT ACCCGGAAGGTTCGGCCGGGCAGTACATGACTCCCGAGGTGGTCGCGCTGCCCAGCGATCTCACCGTCGCCGAGGCGCTG GCGACCGTGCGGGCCAAGGGCGCGCACGCCGAGACCGTGTACACGCTGCCGGTGGTCGACTCGGGCCGGCGGCTGACCGG CATCGTCGAGCTGCGGGAACTCGTGCTGGCCCGGCCGGAGACGATGGTGTCCGAACTCGTCGTCACCGAACCGGCGTTCG CGCGCGCCACCGACTCCGCCGAGAAGGCGGCGCGGTTGATGCGCGAGACCAACGACATCAACCTGCCGGTGGTGGACAGC GAGAACCGCCTGGTCGGCCTGCTCACCATCGACGACGCGGTCGAGGTGATCGAGGCCGCCGACAGCGAAGACGTTGCGCG GCAAGCGGGTTCGGCGCCGTGGGAGGGCCATTACATGGCCGCCGGGGTGTTCCAGCTGGCCCGTTATCGTGCGCTGTGGT TGATGCTGCTGCTGTTCGCGGCGACGTTGACGGTGAGCGTCACCGACTTCTTCCAGGCGACCCTGGAACAGGCCGCCCAC CTGGCGTTGTTCATCCCGCTGCTGATCGGCGCGGGCGGCAACGCGGGCGCGCAGGCGGCGACCGCCTGTGTGCGCGCGCT GGCGGTGGGCGAGGTCCGGGTGTCGGATCTGTTCAAGGTGATCTGGCGGGAGTGCCGGGTCGGGTTGGTGCTGGGGTCAC TGCTGGCCTCGGCAGGCCTGGCGATCGCGGCCCTGTTCGTCGGCCCGCGCATCGCCGTGGTCGTCGCGATCACGCTGGTG CTGATCTGCGGCTGGGCGGCCACCATCGGCGGCACCATGCCGCTGCTGGCCAAGAAGCTCCGCATCGACCCCGCCGTCGT CTCGGCCCCGATGGTGACCACCCTGGTCGACGCGACCGGCCTGGTCATCTACTTCACCACCGCCAAACTGGTATTGGGGA TCTGA
Upstream 100 bases:
>100_bases ACCCACGGTGAGCGGTGCCCCTGTGCTCGCGCGGGGCGCCCGCCGTGGTCACGCTCCGCTGCCGCCTTCGGGCGCCGACC ACTCGAGCTGAGGACTCCCC
Downstream 100 bases:
>100_bases GGTCGGGGCAACAGCGAAAGCGCCGTAGCCGCTGCCGGGTCAGGCCGGGGGACGCGGTCCCTCGCCGGGTGGGACCGGGG TGGTGTTGTCGCGGCAGGGT
Product: putative divalent cation transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 454; Mature: 453
Protein sequence:
>454_residues MSQIDLIEARPVPAESLPEFVADHRVDAALDWLDNHPPHLIADQLARMDAVQAGVAFRLLDKDQALAVFEELEPVDQQQI LQGLRDQSFRELVEGMAPDDRARMLREAPAKVAKKVLAGLSPRERRMTASLLGYPEGSAGQYMTPEVVALPSDLTVAEAL ATVRAKGAHAETVYTLPVVDSGRRLTGIVELRELVLARPETMVSELVVTEPAFARATDSAEKAARLMRETNDINLPVVDS ENRLVGLLTIDDAVEVIEAADSEDVARQAGSAPWEGHYMAAGVFQLARYRALWLMLLLFAATLTVSVTDFFQATLEQAAH LALFIPLLIGAGGNAGAQAATACVRALAVGEVRVSDLFKVIWRECRVGLVLGSLLASAGLAIAALFVGPRIAVVVAITLV LICGWAATIGGTMPLLAKKLRIDPAVVSAPMVTTLVDATGLVIYFTTAKLVLGI
Sequences:
>Translated_454_residues MSQIDLIEARPVPAESLPEFVADHRVDAALDWLDNHPPHLIADQLARMDAVQAGVAFRLLDKDQALAVFEELEPVDQQQI LQGLRDQSFRELVEGMAPDDRARMLREAPAKVAKKVLAGLSPRERRMTASLLGYPEGSAGQYMTPEVVALPSDLTVAEAL ATVRAKGAHAETVYTLPVVDSGRRLTGIVELRELVLARPETMVSELVVTEPAFARATDSAEKAARLMRETNDINLPVVDS ENRLVGLLTIDDAVEVIEAADSEDVARQAGSAPWEGHYMAAGVFQLARYRALWLMLLLFAATLTVSVTDFFQATLEQAAH LALFIPLLIGAGGNAGAQAATACVRALAVGEVRVSDLFKVIWRECRVGLVLGSLLASAGLAIAALFVGPRIAVVVAITLV LICGWAATIGGTMPLLAKKLRIDPAVVSAPMVTTLVDATGLVIYFTTAKLVLGI >Mature_453_residues SQIDLIEARPVPAESLPEFVADHRVDAALDWLDNHPPHLIADQLARMDAVQAGVAFRLLDKDQALAVFEELEPVDQQQIL QGLRDQSFRELVEGMAPDDRARMLREAPAKVAKKVLAGLSPRERRMTASLLGYPEGSAGQYMTPEVVALPSDLTVAEALA TVRAKGAHAETVYTLPVVDSGRRLTGIVELRELVLARPETMVSELVVTEPAFARATDSAEKAARLMRETNDINLPVVDSE NRLVGLLTIDDAVEVIEAADSEDVARQAGSAPWEGHYMAAGVFQLARYRALWLMLLLFAATLTVSVTDFFQATLEQAAHL ALFIPLLIGAGGNAGAQAATACVRALAVGEVRVSDLFKVIWRECRVGLVLGSLLASAGLAIAALFVGPRIAVVVAITLVL ICGWAATIGGTMPLLAKKLRIDPAVVSAPMVTTLVDATGLVIYFTTAKLVLGI
Specific function: Acts as a magnesium transporter [H]
COG id: COG2239
COG function: function code P; Mg/Co/Ni transporter MgtE (contains CBS domain)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000644 - InterPro: IPR006668 - InterPro: IPR006667 - InterPro: IPR006669 [H]
Pfam domain/function: PF00571 CBS; PF01769 MgtE; PF03448 MgtE_N [H]
EC number: NA
Molecular weight: Translated: 48602; Mature: 48471
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQIDLIEARPVPAESLPEFVADHRVDAALDWLDNHPPHLIADQLARMDAVQAGVAFRLL CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHEEEE DKDQALAVFEELEPVDQQQILQGLRDQSFRELVEGMAPDDRARMLREAPAKVAKKVLAGL CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC SPRERRMTASLLGYPEGSAGQYMTPEVVALPSDLTVAEALATVRAKGAHAETVYTLPVVD CHHHHHHHHHHHCCCCCCCCCCCCCHHEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEEC SGRRLTGIVELRELVLARPETMVSELVVTEPAFARATDSAEKAARLMRETNDINLPVVDS CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCCCCCEEECC ENRLVGLLTIDDAVEVIEAADSEDVARQAGSAPWEGHYMAAGVFQLARYRALWLMLLLFA CCCEEEEEEHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH ATLTVSVTDFFQATLEQAAHLALFIPLLIGAGGNAGAQAATACVRALAVGEVRVSDLFKV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHH IWRECRVGLVLGSLLASAGLAIAALFVGPRIAVVVAITLVLICGWAATIGGTMPLLAKKL HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH RIDPAVVSAPMVTTLVDATGLVIYFTTAKLVLGI CCCHHHHHHHHHHHHHHHCCEEEEEEHHHHHHCC >Mature Secondary Structure SQIDLIEARPVPAESLPEFVADHRVDAALDWLDNHPPHLIADQLARMDAVQAGVAFRLL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHEEEE DKDQALAVFEELEPVDQQQILQGLRDQSFRELVEGMAPDDRARMLREAPAKVAKKVLAGL CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC SPRERRMTASLLGYPEGSAGQYMTPEVVALPSDLTVAEALATVRAKGAHAETVYTLPVVD CHHHHHHHHHHHCCCCCCCCCCCCCHHEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEEC SGRRLTGIVELRELVLARPETMVSELVVTEPAFARATDSAEKAARLMRETNDINLPVVDS CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHCCCCCCEEECC ENRLVGLLTIDDAVEVIEAADSEDVARQAGSAPWEGHYMAAGVFQLARYRALWLMLLLFA CCCEEEEEEHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH ATLTVSVTDFFQATLEQAAHLALFIPLLIGAGGNAGAQAATACVRALAVGEVRVSDLFKV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHH IWRECRVGLVLGSLLASAGLAIAALFVGPRIAVVVAITLVLICGWAATIGGTMPLLAKKL HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH RIDPAVVSAPMVTTLVDATGLVIYFTTAKLVLGI CCCHHHHHHHHHHHHHHHCCEEEEEEHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA