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The map label for this gene is 54025826

Identifier: 54025826

GI number: 54025826

Start: 4072349

End: 4072786

Strand: Reverse

Name: 54025826

Synonym: nfa38560

Alternate gene names: NA

Gene position: 4072786-4072349 (Counterclockwise)

Preceding gene: 54025827

Following gene: 54025825

Centisome position: 67.64

GC content: 71.46

Gene sequence:

>438_bases
ATGACGCTGCTGCGAGAGGCGATCGGCGACAGTCTGCGGCGTGCACGTCTCGCCCAGCACCGGACCCTGCGTGAGGTCTC
CACCTCGGCGCGCGTGAGCCTGGGGTATCTGTCGGAGGTCGAACGGGGTCGCAAGGAGGCGTCGAGCGAATTGCTCGCCG
CCATCTGCGACGCGCTGGACGTGCCGCTGTCGCGGGTGCTGTGGGACGTGAGCACGATCATGGCCGGGACGGACGCGGTG
CCGGTCGAGGAACCGGCCGCGACCGAACCCACCCCGCACGAGGAGGCCGCGACCGCCGGACAGGACGCCCCCGTCGGCGA
ACCCGCCGGTGCGACCATGTCGGCCGCGGGCGCCGTCCGCCCGCAGATCGACGAGGACACCCGCATCGTGATTCCCGCCC
CCACGGCGGACATGCTGGTGCTGGTGAAGAGCAACTGA

Upstream 100 bases:

>100_bases
GGAACCACCGCGCGCCGCGGGACGTTGTGCCAGAAAGAGCGGTGCGCGCCAGGCGAGGCTGCCGGAGCGGGCACGGTGAT
CGGGAGCGAAGGAGATCGAG

Downstream 100 bases:

>100_bases
GCCCGCGCAACCGGTGACCCGGCCGTCGTCTTCACTGGGGGCGGACGCCGAAAGCGGCTAGATTCTGTAGTAAGCGTCGG
TTGGGCCGGCCGGTCCGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; Transcriptional Regulator; Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Protein; Transcriptional Regulator ClgR; HTH_3 Family Transcriptional Regulator; Transcription Regulator; Transcriptional Regulatory Protein; Transcriptional Regulator XRE Family Protein; Helix-Turn-Helix XRE-Family Like Proteins

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MTLLREAIGDSLRRARLAQHRTLREVSTSARVSLGYLSEVERGRKEASSELLAAICDALDVPLSRVLWDVSTIMAGTDAV
PVEEPAATEPTPHEEAATAGQDAPVGEPAGATMSAAGAVRPQIDEDTRIVIPAPTADMLVLVKSN

Sequences:

>Translated_145_residues
MTLLREAIGDSLRRARLAQHRTLREVSTSARVSLGYLSEVERGRKEASSELLAAICDALDVPLSRVLWDVSTIMAGTDAV
PVEEPAATEPTPHEEAATAGQDAPVGEPAGATMSAAGAVRPQIDEDTRIVIPAPTADMLVLVKSN
>Mature_144_residues
TLLREAIGDSLRRARLAQHRTLREVSTSARVSLGYLSEVERGRKEASSELLAAICDALDVPLSRVLWDVSTIMAGTDAVP
VEEPAATEPTPHEEAATAGQDAPVGEPAGATMSAAGAVRPQIDEDTRIVIPAPTADMLVLVKSN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15297; Mature: 15166

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLREAIGDSLRRARLAQHRTLREVSTSARVSLGYLSEVERGRKEASSELLAAICDALD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VPLSRVLWDVSTIMAGTDAVPVEEPAATEPTPHEEAATAGQDAPVGEPAGATMSAAGAVR
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
PQIDEDTRIVIPAPTADMLVLVKSN
CCCCCCCEEEEECCCCCEEEEEECC
>Mature Secondary Structure 
TLLREAIGDSLRRARLAQHRTLREVSTSARVSLGYLSEVERGRKEASSELLAAICDALD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
VPLSRVLWDVSTIMAGTDAVPVEEPAATEPTPHEEAATAGQDAPVGEPAGATMSAAGAVR
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC
PQIDEDTRIVIPAPTADMLVLVKSN
CCCCCCCEEEEECCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA