| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is yfiQ [C]
Identifier: 54025747
GI number: 54025747
Start: 3994212
End: 3996896
Strand: Reverse
Name: yfiQ [C]
Synonym: nfa37770
Alternate gene names: 54025747
Gene position: 3996896-3994212 (Counterclockwise)
Preceding gene: 54025748
Following gene: 54025746
Centisome position: 66.38
GC content: 72.63
Gene sequence:
>2685_bases GTGACTGACCAACCCCTGCTGCCCGACAGCCCCGCCACCCCGGCCGTTCCGCCGCCTCCGCCGCAGCACTGGTTCGCCGA CGTGCTCGCCGCCGACGGGGGAGTGGTGCGGCTGCGCCCGATCACCCCCGACGACGCCGAGCCGTTGCAGACCTTCCACG CCGCGCTCTCCGACCGCACCCGCTACCTGCGCTATTTCGGTCCCTACCCGCGCATCTCGCCGAAGGACCTGTACCGCACC ACCCACGTCGACTACCAGGACCGGGTGGGGCTCGTGGTCGAGCTCGGCGACGCCATCATCGCGGTGGGCCGCTACGAACT GCTCGACCGCACCGGGCCGCGCGCGGCCGAGGTCGCCTTCGTCGTCGCCGACGAGCACCAGGGCCGCGGACTCGGTTCGA TCCTGCTCGAGCATCTGGCGGGCGCGGCCGCGGAGAACAAGATCCAGACCTTCGTCGCCGAGGTACTGGCCGAGAACACC GCGATGGTCACGGTGTTCCGGGACGCGGGCTACCAGGTCGAGCGCAGTCGCGACGGCACCGTGCTCCACCTGGAATTCGC CATCGACCCCACCGAAGCCCTTGTCACGGTGCGTGATTCACGGGAGCGTGCCTCCGAGGCCCGCAGCGTGGGCAACCTGC TCGCGCCGCGCAGCATCGCGGTGATCGGGGCCACGCCGGGCACCGGGCGCGTCGGCGGCGCGGTGCTGGCGAACCTGCTG TCCGGGGTGTTCCAGGGGCCGGTGTTCCCGGTCAACCCGAATCGGCGGTTCGTGCGCGGCGTGCGCGCCTACGCCACCGT GCGCGAGATCCCCGACGAGGTCGATCTCGCGGTGGTCGCGGTGCCCGCGGCGGCCATCGATTCGGTGCTCGACGACTGTA TGGCCAAGGGCGTCAAGGGCTTGGTGGTGCTGACGGCGGGCTTCGGCGAGACGGGTCCGGAGGGCATGGCCGCCGAACGC GAACTGGTGGCCGCCGCGCGCGGGCACGGCATGCGGGTGGTGGGGCCGAGCGCGCTCGGCATCGCCAACACCGATCCCGA GGTGGCGATGAACGCGACGTTGGCCCCCGTGCTGCCCCCGCGCGGCCGGATCGGCTTCTTCTGCCAGTCCGGGCCGCTGG GTGCGGCGATCCTGGGCGAGGCCGCCGCGCGCAACCTCGGGCTGTCCACCTTCGTCTCGGCCGGCAACCGCGCCGACGTC TCCGGTAACGATCTGCTGCAGTACTGGGACACGGACGCGGCCACCGACCTGGTGCTGCTGTACCTGGAGAGTTTCGGCAA TCCGCGCAAGTTCTCCCGGATCGCCCGGCGCGTGGCGCGCACCAAGCCGATCGTCGCGGTGAGCAGTGGCCGTTCGGTGC GCACCCGGCCCGGCGCCGACATGGACCGCTCGATCGTGCGGGACCTGTTCGCCCAGGCGGGCATCGTGCAGGTGGACTCG ATCTCGGAGCTGTTCGACTGCGCGGCGCTGCTCGGCTATCAGCCGCTGCCGCGCGGACCGCGCCTGGCCGTGGTGAGCAA CAGCACCGCGCTGAGCTGGCTGGCCGTCGACGCCGCGCGCGGGGAGGGGATGGTCGCCGCCGAGCCGGTGAACCTCGGCC CGCAGGCGACACCGGGCGCCTACCTCGACGCGGTGGTCGAGGCGTTGCGCAGCGACGAGGTGGACGCCCTGATCATCGTG TTCGCGCCACCGGTGCCGGTGCCGATGGCCGGCTTCGCCGACGCCATCCGCTCCGCCGCGGCGGCGGTGCCGGAGGCGGA GAAGCCGATCCTGACCACCTTCATCGCCGAACAGGGGATACCGAATCTGCTGGCGGTGCGTGGCCGTAACGGGATGGCCG TGCGCGGCTCCATCCCGTCCTATCCCGATCCCGAGCGGGCCGCACGGGCGCTGGCCCGGGTGCATCGCTACGCGCGCTGG CGGGACACCCCGGCGACGTCGGTCGTGCGACCCGAGGGCATCGACGCCGAGCGGGCCGCCGCGCTGGTCGCGGGCTGGAT GGCCGAATCGGGCGGGCGCTGGCTCAGCGACCTCGAGGTGGTCGACCTGCTGGCCTGCTACGGCATCCGGGTGGTCGAGT TCCAGGAGGTGCGCAACGCCGACGAGGCGGTGGCGGCGGCCGAGGCGCTGGGTTACCCGGTGGCGGCCAAGGCGACCGGG GAGACGTGGCGGCGCAGGCCGGACCTCAGCGGTGTGCGCCTGGATCTGTGGCGGCCGGAGGCGGTACGGCAGGCCTACAC CGACCTGGTGGCGATGTGCGGCGATCCGGTGCTGCACATCCAGCGGATGGCGACCAAGGGGGTGGGCTGCATCCTGCGGG TACAGGACGATCCCTCGTTCGGATCGGTGATCGAGTTCGGGTTGTCCGGGCTGATCATCGAGCTGCTCGGCGACCGCGCC TACCGGGCGCTGCCGCTGACCGAGTCGGAGGCGGTGGCCCTGATCGATGCGCCTCGCGCGGCGCCGCTGCTGTCGGGCAC GCCGGCCAGCCCGCAGGTGGACAAGGCGGCCCTGGTCGAGCTGGCCCAGCGGATCTCGGCGCTCTTCGACGACCTGCCGG AGATGCGCGAACTGGCCTTCGATCCCGTGCTCGCCTCGCCGACGTCGGCCGAGATCCTGTACGCGCGGGGCCGGATCGGT CCCGAGCCGAGCCGCTTCGACACCGGTCCGCGGCGACTGGCTTGA
Upstream 100 bases:
>100_bases GATCCGCGCGTGGACCGCGCGCAACGGGCCGTCGACACCGCCGTACTGGCCACCCGCCGTGCGAGTTTCGGACTACTGGG TCTCGATCCGGAGGATCCTC
Downstream 100 bases:
>100_bases TCACGAGCGGGACTCGACGCGGCAACGACGTGCGTCAACAGCGCCCGCGCGGGCCTCGATCTGGGGTAGGTCTGTGAACG CGTCCCCGCACCGGAGACGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 894; Mature: 893
Protein sequence:
>894_residues MTDQPLLPDSPATPAVPPPPPQHWFADVLAADGGVVRLRPITPDDAEPLQTFHAALSDRTRYLRYFGPYPRISPKDLYRT THVDYQDRVGLVVELGDAIIAVGRYELLDRTGPRAAEVAFVVADEHQGRGLGSILLEHLAGAAAENKIQTFVAEVLAENT AMVTVFRDAGYQVERSRDGTVLHLEFAIDPTEALVTVRDSRERASEARSVGNLLAPRSIAVIGATPGTGRVGGAVLANLL SGVFQGPVFPVNPNRRFVRGVRAYATVREIPDEVDLAVVAVPAAAIDSVLDDCMAKGVKGLVVLTAGFGETGPEGMAAER ELVAAARGHGMRVVGPSALGIANTDPEVAMNATLAPVLPPRGRIGFFCQSGPLGAAILGEAAARNLGLSTFVSAGNRADV SGNDLLQYWDTDAATDLVLLYLESFGNPRKFSRIARRVARTKPIVAVSSGRSVRTRPGADMDRSIVRDLFAQAGIVQVDS ISELFDCAALLGYQPLPRGPRLAVVSNSTALSWLAVDAARGEGMVAAEPVNLGPQATPGAYLDAVVEALRSDEVDALIIV FAPPVPVPMAGFADAIRSAAAAVPEAEKPILTTFIAEQGIPNLLAVRGRNGMAVRGSIPSYPDPERAARALARVHRYARW RDTPATSVVRPEGIDAERAAALVAGWMAESGGRWLSDLEVVDLLACYGIRVVEFQEVRNADEAVAAAEALGYPVAAKATG ETWRRRPDLSGVRLDLWRPEAVRQAYTDLVAMCGDPVLHIQRMATKGVGCILRVQDDPSFGSVIEFGLSGLIIELLGDRA YRALPLTESEAVALIDAPRAAPLLSGTPASPQVDKAALVELAQRISALFDDLPEMRELAFDPVLASPTSAEILYARGRIG PEPSRFDTGPRRLA
Sequences:
>Translated_894_residues MTDQPLLPDSPATPAVPPPPPQHWFADVLAADGGVVRLRPITPDDAEPLQTFHAALSDRTRYLRYFGPYPRISPKDLYRT THVDYQDRVGLVVELGDAIIAVGRYELLDRTGPRAAEVAFVVADEHQGRGLGSILLEHLAGAAAENKIQTFVAEVLAENT AMVTVFRDAGYQVERSRDGTVLHLEFAIDPTEALVTVRDSRERASEARSVGNLLAPRSIAVIGATPGTGRVGGAVLANLL SGVFQGPVFPVNPNRRFVRGVRAYATVREIPDEVDLAVVAVPAAAIDSVLDDCMAKGVKGLVVLTAGFGETGPEGMAAER ELVAAARGHGMRVVGPSALGIANTDPEVAMNATLAPVLPPRGRIGFFCQSGPLGAAILGEAAARNLGLSTFVSAGNRADV SGNDLLQYWDTDAATDLVLLYLESFGNPRKFSRIARRVARTKPIVAVSSGRSVRTRPGADMDRSIVRDLFAQAGIVQVDS ISELFDCAALLGYQPLPRGPRLAVVSNSTALSWLAVDAARGEGMVAAEPVNLGPQATPGAYLDAVVEALRSDEVDALIIV FAPPVPVPMAGFADAIRSAAAAVPEAEKPILTTFIAEQGIPNLLAVRGRNGMAVRGSIPSYPDPERAARALARVHRYARW RDTPATSVVRPEGIDAERAAALVAGWMAESGGRWLSDLEVVDLLACYGIRVVEFQEVRNADEAVAAAEALGYPVAAKATG ETWRRRPDLSGVRLDLWRPEAVRQAYTDLVAMCGDPVLHIQRMATKGVGCILRVQDDPSFGSVIEFGLSGLIIELLGDRA YRALPLTESEAVALIDAPRAAPLLSGTPASPQVDKAALVELAQRISALFDDLPEMRELAFDPVLASPTSAEILYARGRIG PEPSRFDTGPRRLA >Mature_893_residues TDQPLLPDSPATPAVPPPPPQHWFADVLAADGGVVRLRPITPDDAEPLQTFHAALSDRTRYLRYFGPYPRISPKDLYRTT HVDYQDRVGLVVELGDAIIAVGRYELLDRTGPRAAEVAFVVADEHQGRGLGSILLEHLAGAAAENKIQTFVAEVLAENTA MVTVFRDAGYQVERSRDGTVLHLEFAIDPTEALVTVRDSRERASEARSVGNLLAPRSIAVIGATPGTGRVGGAVLANLLS GVFQGPVFPVNPNRRFVRGVRAYATVREIPDEVDLAVVAVPAAAIDSVLDDCMAKGVKGLVVLTAGFGETGPEGMAAERE LVAAARGHGMRVVGPSALGIANTDPEVAMNATLAPVLPPRGRIGFFCQSGPLGAAILGEAAARNLGLSTFVSAGNRADVS GNDLLQYWDTDAATDLVLLYLESFGNPRKFSRIARRVARTKPIVAVSSGRSVRTRPGADMDRSIVRDLFAQAGIVQVDSI SELFDCAALLGYQPLPRGPRLAVVSNSTALSWLAVDAARGEGMVAAEPVNLGPQATPGAYLDAVVEALRSDEVDALIIVF APPVPVPMAGFADAIRSAAAAVPEAEKPILTTFIAEQGIPNLLAVRGRNGMAVRGSIPSYPDPERAARALARVHRYARWR DTPATSVVRPEGIDAERAAALVAGWMAESGGRWLSDLEVVDLLACYGIRVVEFQEVRNADEAVAAAEALGYPVAAKATGE TWRRRPDLSGVRLDLWRPEAVRQAYTDLVAMCGDPVLHIQRMATKGVGCILRVQDDPSFGSVIEFGLSGLIIELLGDRAY RALPLTESEAVALIDAPRAAPLLSGTPASPQVDKAALVELAQRISALFDDLPEMRELAFDPVLASPTSAEILYARGRIGP EPSRFDTGPRRLA
Specific function: Unknown
COG id: COG1042
COG function: function code C; Acyl-CoA synthetase (NDP forming)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yfiQ [H]
Homologues:
Organism=Escherichia coli, GI1788938, Length=706, Percent_Identity=30.4532577903683, Blast_Score=239, Evalue=8e-64,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014089 - InterPro: IPR013650 - InterPro: IPR003781 - InterPro: IPR016040 - InterPro: IPR005809 - InterPro: IPR016102 [H]
Pfam domain/function: PF08442 ATP-grasp_2; PF02629 CoA_binding [H]
EC number: NA
Molecular weight: Translated: 95106; Mature: 94974
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDQPLLPDSPATPAVPPPPPQHWFADVLAADGGVVRLRPITPDDAEPLQTFHAALSDRT CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH RYLRYFGPYPRISPKDLYRTTHVDYQDRVGLVVELGDAIIAVGRYELLDRTGPRAAEVAF HHHHHCCCCCCCCHHHHHHHCCCCHHHCCCEEEEECCHHEEHHHHHHHHCCCCCCEEEEE VVADEHQGRGLGSILLEHLAGAAAENKIQTFVAEVLAENTAMVTVFRDAGYQVERSRDGT EEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEECCCCCC VLHLEFAIDPTEALVTVRDSRERASEARSVGNLLAPRSIAVIGATPGTGRVGGAVLANLL EEEEEEEECCCHHEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH SGVFQGPVFPVNPNRRFVRGVRAYATVREIPDEVDLAVVAVPAAAIDSVLDDCMAKGVKG HHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCHHCEEEEEECHHHHHHHHHHHHHCCCCE LVVLTAGFGETGPEGMAAERELVAAARGHGMRVVGPSALGIANTDPEVAMNATLAPVLPP EEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEECCEECCCCCC RGRIGFFCQSGPLGAAILGEAAARNLGLSTFVSAGNRADVSGNDLLQYWDTDAATDLVLL CCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHH YLESFGNPRKFSRIARRVARTKPIVAVSSGRSVRTRPGADMDRSIVRDLFAQAGIVQVDS HHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEECCCCCCHHHHHHHHHHHHCCCEEEHH ISELFDCAALLGYQPLPRGPRLAVVSNSTALSWLAVDAARGEGMVAAEPVNLGPQATPGA HHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCH YLDAVVEALRSDEVDALIIVFAPPVPVPMAGFADAIRSAAAAVPEAEKPILTTFIAEQGI HHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC PNLLAVRGRNGMAVRGSIPSYPDPERAARALARVHRYARWRDTPATSVVRPEGIDAERAA CCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH ALVAGWMAESGGRWLSDLEVVDLLACYGIRVVEFQEVRNADEAVAAAEALGYPVAAKATG HHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEHHHHCCHHHHHHHHHHHCCCEEECCCC ETWRRRPDLSGVRLDLWRPEAVRQAYTDLVAMCGDPVLHIQRMATKGVGCILRVQDDPSF HHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCH GSVIEFGLSGLIIELLGDRAYRALPLTESEAVALIDAPRAAPLLSGTPASPQVDKAALVE HHHHHHHHHHHHHHHHCCCHHEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHH LAQRISALFDDLPEMRELAFDPVLASPTSAEILYARGRIGPEPSRFDTGPRRLA HHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TDQPLLPDSPATPAVPPPPPQHWFADVLAADGGVVRLRPITPDDAEPLQTFHAALSDRT CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH RYLRYFGPYPRISPKDLYRTTHVDYQDRVGLVVELGDAIIAVGRYELLDRTGPRAAEVAF HHHHHCCCCCCCCHHHHHHHCCCCHHHCCCEEEEECCHHEEHHHHHHHHCCCCCCEEEEE VVADEHQGRGLGSILLEHLAGAAAENKIQTFVAEVLAENTAMVTVFRDAGYQVERSRDGT EEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEECCCCCC VLHLEFAIDPTEALVTVRDSRERASEARSVGNLLAPRSIAVIGATPGTGRVGGAVLANLL EEEEEEEECCCHHEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH SGVFQGPVFPVNPNRRFVRGVRAYATVREIPDEVDLAVVAVPAAAIDSVLDDCMAKGVKG HHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCHHCEEEEEECHHHHHHHHHHHHHCCCCE LVVLTAGFGETGPEGMAAERELVAAARGHGMRVVGPSALGIANTDPEVAMNATLAPVLPP EEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEECCEECCCCCC RGRIGFFCQSGPLGAAILGEAAARNLGLSTFVSAGNRADVSGNDLLQYWDTDAATDLVLL CCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHH YLESFGNPRKFSRIARRVARTKPIVAVSSGRSVRTRPGADMDRSIVRDLFAQAGIVQVDS HHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEECCCCCCHHHHHHHHHHHHCCCEEEHH ISELFDCAALLGYQPLPRGPRLAVVSNSTALSWLAVDAARGEGMVAAEPVNLGPQATPGA HHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCH YLDAVVEALRSDEVDALIIVFAPPVPVPMAGFADAIRSAAAAVPEAEKPILTTFIAEQGI HHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC PNLLAVRGRNGMAVRGSIPSYPDPERAARALARVHRYARWRDTPATSVVRPEGIDAERAA CCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH ALVAGWMAESGGRWLSDLEVVDLLACYGIRVVEFQEVRNADEAVAAAEALGYPVAAKATG HHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEHHHHCCHHHHHHHHHHHCCCEEECCCC ETWRRRPDLSGVRLDLWRPEAVRQAYTDLVAMCGDPVLHIQRMATKGVGCILRVQDDPSF HHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCH GSVIEFGLSGLIIELLGDRAYRALPLTESEAVALIDAPRAAPLLSGTPASPQVDKAALVE HHHHHHHHHHHHHHHHCCCHHEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHH LAQRISALFDDLPEMRELAFDPVLASPTSAEILYARGRIGPEPSRFDTGPRRLA HHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]