Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

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The map label for this gene is yfiQ [C]

Identifier: 54025747

GI number: 54025747

Start: 3994212

End: 3996896

Strand: Reverse

Name: yfiQ [C]

Synonym: nfa37770

Alternate gene names: 54025747

Gene position: 3996896-3994212 (Counterclockwise)

Preceding gene: 54025748

Following gene: 54025746

Centisome position: 66.38

GC content: 72.63

Gene sequence:

>2685_bases
GTGACTGACCAACCCCTGCTGCCCGACAGCCCCGCCACCCCGGCCGTTCCGCCGCCTCCGCCGCAGCACTGGTTCGCCGA
CGTGCTCGCCGCCGACGGGGGAGTGGTGCGGCTGCGCCCGATCACCCCCGACGACGCCGAGCCGTTGCAGACCTTCCACG
CCGCGCTCTCCGACCGCACCCGCTACCTGCGCTATTTCGGTCCCTACCCGCGCATCTCGCCGAAGGACCTGTACCGCACC
ACCCACGTCGACTACCAGGACCGGGTGGGGCTCGTGGTCGAGCTCGGCGACGCCATCATCGCGGTGGGCCGCTACGAACT
GCTCGACCGCACCGGGCCGCGCGCGGCCGAGGTCGCCTTCGTCGTCGCCGACGAGCACCAGGGCCGCGGACTCGGTTCGA
TCCTGCTCGAGCATCTGGCGGGCGCGGCCGCGGAGAACAAGATCCAGACCTTCGTCGCCGAGGTACTGGCCGAGAACACC
GCGATGGTCACGGTGTTCCGGGACGCGGGCTACCAGGTCGAGCGCAGTCGCGACGGCACCGTGCTCCACCTGGAATTCGC
CATCGACCCCACCGAAGCCCTTGTCACGGTGCGTGATTCACGGGAGCGTGCCTCCGAGGCCCGCAGCGTGGGCAACCTGC
TCGCGCCGCGCAGCATCGCGGTGATCGGGGCCACGCCGGGCACCGGGCGCGTCGGCGGCGCGGTGCTGGCGAACCTGCTG
TCCGGGGTGTTCCAGGGGCCGGTGTTCCCGGTCAACCCGAATCGGCGGTTCGTGCGCGGCGTGCGCGCCTACGCCACCGT
GCGCGAGATCCCCGACGAGGTCGATCTCGCGGTGGTCGCGGTGCCCGCGGCGGCCATCGATTCGGTGCTCGACGACTGTA
TGGCCAAGGGCGTCAAGGGCTTGGTGGTGCTGACGGCGGGCTTCGGCGAGACGGGTCCGGAGGGCATGGCCGCCGAACGC
GAACTGGTGGCCGCCGCGCGCGGGCACGGCATGCGGGTGGTGGGGCCGAGCGCGCTCGGCATCGCCAACACCGATCCCGA
GGTGGCGATGAACGCGACGTTGGCCCCCGTGCTGCCCCCGCGCGGCCGGATCGGCTTCTTCTGCCAGTCCGGGCCGCTGG
GTGCGGCGATCCTGGGCGAGGCCGCCGCGCGCAACCTCGGGCTGTCCACCTTCGTCTCGGCCGGCAACCGCGCCGACGTC
TCCGGTAACGATCTGCTGCAGTACTGGGACACGGACGCGGCCACCGACCTGGTGCTGCTGTACCTGGAGAGTTTCGGCAA
TCCGCGCAAGTTCTCCCGGATCGCCCGGCGCGTGGCGCGCACCAAGCCGATCGTCGCGGTGAGCAGTGGCCGTTCGGTGC
GCACCCGGCCCGGCGCCGACATGGACCGCTCGATCGTGCGGGACCTGTTCGCCCAGGCGGGCATCGTGCAGGTGGACTCG
ATCTCGGAGCTGTTCGACTGCGCGGCGCTGCTCGGCTATCAGCCGCTGCCGCGCGGACCGCGCCTGGCCGTGGTGAGCAA
CAGCACCGCGCTGAGCTGGCTGGCCGTCGACGCCGCGCGCGGGGAGGGGATGGTCGCCGCCGAGCCGGTGAACCTCGGCC
CGCAGGCGACACCGGGCGCCTACCTCGACGCGGTGGTCGAGGCGTTGCGCAGCGACGAGGTGGACGCCCTGATCATCGTG
TTCGCGCCACCGGTGCCGGTGCCGATGGCCGGCTTCGCCGACGCCATCCGCTCCGCCGCGGCGGCGGTGCCGGAGGCGGA
GAAGCCGATCCTGACCACCTTCATCGCCGAACAGGGGATACCGAATCTGCTGGCGGTGCGTGGCCGTAACGGGATGGCCG
TGCGCGGCTCCATCCCGTCCTATCCCGATCCCGAGCGGGCCGCACGGGCGCTGGCCCGGGTGCATCGCTACGCGCGCTGG
CGGGACACCCCGGCGACGTCGGTCGTGCGACCCGAGGGCATCGACGCCGAGCGGGCCGCCGCGCTGGTCGCGGGCTGGAT
GGCCGAATCGGGCGGGCGCTGGCTCAGCGACCTCGAGGTGGTCGACCTGCTGGCCTGCTACGGCATCCGGGTGGTCGAGT
TCCAGGAGGTGCGCAACGCCGACGAGGCGGTGGCGGCGGCCGAGGCGCTGGGTTACCCGGTGGCGGCCAAGGCGACCGGG
GAGACGTGGCGGCGCAGGCCGGACCTCAGCGGTGTGCGCCTGGATCTGTGGCGGCCGGAGGCGGTACGGCAGGCCTACAC
CGACCTGGTGGCGATGTGCGGCGATCCGGTGCTGCACATCCAGCGGATGGCGACCAAGGGGGTGGGCTGCATCCTGCGGG
TACAGGACGATCCCTCGTTCGGATCGGTGATCGAGTTCGGGTTGTCCGGGCTGATCATCGAGCTGCTCGGCGACCGCGCC
TACCGGGCGCTGCCGCTGACCGAGTCGGAGGCGGTGGCCCTGATCGATGCGCCTCGCGCGGCGCCGCTGCTGTCGGGCAC
GCCGGCCAGCCCGCAGGTGGACAAGGCGGCCCTGGTCGAGCTGGCCCAGCGGATCTCGGCGCTCTTCGACGACCTGCCGG
AGATGCGCGAACTGGCCTTCGATCCCGTGCTCGCCTCGCCGACGTCGGCCGAGATCCTGTACGCGCGGGGCCGGATCGGT
CCCGAGCCGAGCCGCTTCGACACCGGTCCGCGGCGACTGGCTTGA

Upstream 100 bases:

>100_bases
GATCCGCGCGTGGACCGCGCGCAACGGGCCGTCGACACCGCCGTACTGGCCACCCGCCGTGCGAGTTTCGGACTACTGGG
TCTCGATCCGGAGGATCCTC

Downstream 100 bases:

>100_bases
TCACGAGCGGGACTCGACGCGGCAACGACGTGCGTCAACAGCGCCCGCGCGGGCCTCGATCTGGGGTAGGTCTGTGAACG
CGTCCCCGCACCGGAGACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 894; Mature: 893

Protein sequence:

>894_residues
MTDQPLLPDSPATPAVPPPPPQHWFADVLAADGGVVRLRPITPDDAEPLQTFHAALSDRTRYLRYFGPYPRISPKDLYRT
THVDYQDRVGLVVELGDAIIAVGRYELLDRTGPRAAEVAFVVADEHQGRGLGSILLEHLAGAAAENKIQTFVAEVLAENT
AMVTVFRDAGYQVERSRDGTVLHLEFAIDPTEALVTVRDSRERASEARSVGNLLAPRSIAVIGATPGTGRVGGAVLANLL
SGVFQGPVFPVNPNRRFVRGVRAYATVREIPDEVDLAVVAVPAAAIDSVLDDCMAKGVKGLVVLTAGFGETGPEGMAAER
ELVAAARGHGMRVVGPSALGIANTDPEVAMNATLAPVLPPRGRIGFFCQSGPLGAAILGEAAARNLGLSTFVSAGNRADV
SGNDLLQYWDTDAATDLVLLYLESFGNPRKFSRIARRVARTKPIVAVSSGRSVRTRPGADMDRSIVRDLFAQAGIVQVDS
ISELFDCAALLGYQPLPRGPRLAVVSNSTALSWLAVDAARGEGMVAAEPVNLGPQATPGAYLDAVVEALRSDEVDALIIV
FAPPVPVPMAGFADAIRSAAAAVPEAEKPILTTFIAEQGIPNLLAVRGRNGMAVRGSIPSYPDPERAARALARVHRYARW
RDTPATSVVRPEGIDAERAAALVAGWMAESGGRWLSDLEVVDLLACYGIRVVEFQEVRNADEAVAAAEALGYPVAAKATG
ETWRRRPDLSGVRLDLWRPEAVRQAYTDLVAMCGDPVLHIQRMATKGVGCILRVQDDPSFGSVIEFGLSGLIIELLGDRA
YRALPLTESEAVALIDAPRAAPLLSGTPASPQVDKAALVELAQRISALFDDLPEMRELAFDPVLASPTSAEILYARGRIG
PEPSRFDTGPRRLA

Sequences:

>Translated_894_residues
MTDQPLLPDSPATPAVPPPPPQHWFADVLAADGGVVRLRPITPDDAEPLQTFHAALSDRTRYLRYFGPYPRISPKDLYRT
THVDYQDRVGLVVELGDAIIAVGRYELLDRTGPRAAEVAFVVADEHQGRGLGSILLEHLAGAAAENKIQTFVAEVLAENT
AMVTVFRDAGYQVERSRDGTVLHLEFAIDPTEALVTVRDSRERASEARSVGNLLAPRSIAVIGATPGTGRVGGAVLANLL
SGVFQGPVFPVNPNRRFVRGVRAYATVREIPDEVDLAVVAVPAAAIDSVLDDCMAKGVKGLVVLTAGFGETGPEGMAAER
ELVAAARGHGMRVVGPSALGIANTDPEVAMNATLAPVLPPRGRIGFFCQSGPLGAAILGEAAARNLGLSTFVSAGNRADV
SGNDLLQYWDTDAATDLVLLYLESFGNPRKFSRIARRVARTKPIVAVSSGRSVRTRPGADMDRSIVRDLFAQAGIVQVDS
ISELFDCAALLGYQPLPRGPRLAVVSNSTALSWLAVDAARGEGMVAAEPVNLGPQATPGAYLDAVVEALRSDEVDALIIV
FAPPVPVPMAGFADAIRSAAAAVPEAEKPILTTFIAEQGIPNLLAVRGRNGMAVRGSIPSYPDPERAARALARVHRYARW
RDTPATSVVRPEGIDAERAAALVAGWMAESGGRWLSDLEVVDLLACYGIRVVEFQEVRNADEAVAAAEALGYPVAAKATG
ETWRRRPDLSGVRLDLWRPEAVRQAYTDLVAMCGDPVLHIQRMATKGVGCILRVQDDPSFGSVIEFGLSGLIIELLGDRA
YRALPLTESEAVALIDAPRAAPLLSGTPASPQVDKAALVELAQRISALFDDLPEMRELAFDPVLASPTSAEILYARGRIG
PEPSRFDTGPRRLA
>Mature_893_residues
TDQPLLPDSPATPAVPPPPPQHWFADVLAADGGVVRLRPITPDDAEPLQTFHAALSDRTRYLRYFGPYPRISPKDLYRTT
HVDYQDRVGLVVELGDAIIAVGRYELLDRTGPRAAEVAFVVADEHQGRGLGSILLEHLAGAAAENKIQTFVAEVLAENTA
MVTVFRDAGYQVERSRDGTVLHLEFAIDPTEALVTVRDSRERASEARSVGNLLAPRSIAVIGATPGTGRVGGAVLANLLS
GVFQGPVFPVNPNRRFVRGVRAYATVREIPDEVDLAVVAVPAAAIDSVLDDCMAKGVKGLVVLTAGFGETGPEGMAAERE
LVAAARGHGMRVVGPSALGIANTDPEVAMNATLAPVLPPRGRIGFFCQSGPLGAAILGEAAARNLGLSTFVSAGNRADVS
GNDLLQYWDTDAATDLVLLYLESFGNPRKFSRIARRVARTKPIVAVSSGRSVRTRPGADMDRSIVRDLFAQAGIVQVDSI
SELFDCAALLGYQPLPRGPRLAVVSNSTALSWLAVDAARGEGMVAAEPVNLGPQATPGAYLDAVVEALRSDEVDALIIVF
APPVPVPMAGFADAIRSAAAAVPEAEKPILTTFIAEQGIPNLLAVRGRNGMAVRGSIPSYPDPERAARALARVHRYARWR
DTPATSVVRPEGIDAERAAALVAGWMAESGGRWLSDLEVVDLLACYGIRVVEFQEVRNADEAVAAAEALGYPVAAKATGE
TWRRRPDLSGVRLDLWRPEAVRQAYTDLVAMCGDPVLHIQRMATKGVGCILRVQDDPSFGSVIEFGLSGLIIELLGDRAY
RALPLTESEAVALIDAPRAAPLLSGTPASPQVDKAALVELAQRISALFDDLPEMRELAFDPVLASPTSAEILYARGRIGP
EPSRFDTGPRRLA

Specific function: Unknown

COG id: COG1042

COG function: function code C; Acyl-CoA synthetase (NDP forming)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yfiQ [H]

Homologues:

Organism=Escherichia coli, GI1788938, Length=706, Percent_Identity=30.4532577903683, Blast_Score=239, Evalue=8e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014089
- InterPro:   IPR013650
- InterPro:   IPR003781
- InterPro:   IPR016040
- InterPro:   IPR005809
- InterPro:   IPR016102 [H]

Pfam domain/function: PF08442 ATP-grasp_2; PF02629 CoA_binding [H]

EC number: NA

Molecular weight: Translated: 95106; Mature: 94974

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQPLLPDSPATPAVPPPPPQHWFADVLAADGGVVRLRPITPDDAEPLQTFHAALSDRT
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
RYLRYFGPYPRISPKDLYRTTHVDYQDRVGLVVELGDAIIAVGRYELLDRTGPRAAEVAF
HHHHHCCCCCCCCHHHHHHHCCCCHHHCCCEEEEECCHHEEHHHHHHHHCCCCCCEEEEE
VVADEHQGRGLGSILLEHLAGAAAENKIQTFVAEVLAENTAMVTVFRDAGYQVERSRDGT
EEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEECCCCCC
VLHLEFAIDPTEALVTVRDSRERASEARSVGNLLAPRSIAVIGATPGTGRVGGAVLANLL
EEEEEEEECCCHHEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
SGVFQGPVFPVNPNRRFVRGVRAYATVREIPDEVDLAVVAVPAAAIDSVLDDCMAKGVKG
HHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCHHCEEEEEECHHHHHHHHHHHHHCCCCE
LVVLTAGFGETGPEGMAAERELVAAARGHGMRVVGPSALGIANTDPEVAMNATLAPVLPP
EEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEECCEECCCCCC
RGRIGFFCQSGPLGAAILGEAAARNLGLSTFVSAGNRADVSGNDLLQYWDTDAATDLVLL
CCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHH
YLESFGNPRKFSRIARRVARTKPIVAVSSGRSVRTRPGADMDRSIVRDLFAQAGIVQVDS
HHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEECCCCCCHHHHHHHHHHHHCCCEEEHH
ISELFDCAALLGYQPLPRGPRLAVVSNSTALSWLAVDAARGEGMVAAEPVNLGPQATPGA
HHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCH
YLDAVVEALRSDEVDALIIVFAPPVPVPMAGFADAIRSAAAAVPEAEKPILTTFIAEQGI
HHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
PNLLAVRGRNGMAVRGSIPSYPDPERAARALARVHRYARWRDTPATSVVRPEGIDAERAA
CCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
ALVAGWMAESGGRWLSDLEVVDLLACYGIRVVEFQEVRNADEAVAAAEALGYPVAAKATG
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEHHHHCCHHHHHHHHHHHCCCEEECCCC
ETWRRRPDLSGVRLDLWRPEAVRQAYTDLVAMCGDPVLHIQRMATKGVGCILRVQDDPSF
HHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCH
GSVIEFGLSGLIIELLGDRAYRALPLTESEAVALIDAPRAAPLLSGTPASPQVDKAALVE
HHHHHHHHHHHHHHHHCCCHHEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHH
LAQRISALFDDLPEMRELAFDPVLASPTSAEILYARGRIGPEPSRFDTGPRRLA
HHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDQPLLPDSPATPAVPPPPPQHWFADVLAADGGVVRLRPITPDDAEPLQTFHAALSDRT
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
RYLRYFGPYPRISPKDLYRTTHVDYQDRVGLVVELGDAIIAVGRYELLDRTGPRAAEVAF
HHHHHCCCCCCCCHHHHHHHCCCCHHHCCCEEEEECCHHEEHHHHHHHHCCCCCCEEEEE
VVADEHQGRGLGSILLEHLAGAAAENKIQTFVAEVLAENTAMVTVFRDAGYQVERSRDGT
EEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEECCCCCC
VLHLEFAIDPTEALVTVRDSRERASEARSVGNLLAPRSIAVIGATPGTGRVGGAVLANLL
EEEEEEEECCCHHEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHH
SGVFQGPVFPVNPNRRFVRGVRAYATVREIPDEVDLAVVAVPAAAIDSVLDDCMAKGVKG
HHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCHHCEEEEEECHHHHHHHHHHHHHCCCCE
LVVLTAGFGETGPEGMAAERELVAAARGHGMRVVGPSALGIANTDPEVAMNATLAPVLPP
EEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEECCEECCCCCC
RGRIGFFCQSGPLGAAILGEAAARNLGLSTFVSAGNRADVSGNDLLQYWDTDAATDLVLL
CCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHH
YLESFGNPRKFSRIARRVARTKPIVAVSSGRSVRTRPGADMDRSIVRDLFAQAGIVQVDS
HHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCEECCCCCCHHHHHHHHHHHHCCCEEEHH
ISELFDCAALLGYQPLPRGPRLAVVSNSTALSWLAVDAARGEGMVAAEPVNLGPQATPGA
HHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCH
YLDAVVEALRSDEVDALIIVFAPPVPVPMAGFADAIRSAAAAVPEAEKPILTTFIAEQGI
HHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
PNLLAVRGRNGMAVRGSIPSYPDPERAARALARVHRYARWRDTPATSVVRPEGIDAERAA
CCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
ALVAGWMAESGGRWLSDLEVVDLLACYGIRVVEFQEVRNADEAVAAAEALGYPVAAKATG
HHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEHHHHCCHHHHHHHHHHHCCCEEECCCC
ETWRRRPDLSGVRLDLWRPEAVRQAYTDLVAMCGDPVLHIQRMATKGVGCILRVQDDPSF
HHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEECCCCCH
GSVIEFGLSGLIIELLGDRAYRALPLTESEAVALIDAPRAAPLLSGTPASPQVDKAALVE
HHHHHHHHHHHHHHHHCCCHHEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHH
LAQRISALFDDLPEMRELAFDPVLASPTSAEILYARGRIGPEPSRFDTGPRRLA
HHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]