BacMap

Definition	Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession	NC_006361
Length	6,021,225

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The map label for this gene is yjgI [H]

Identifier: 54025737

GI number: 54025737

Start: 3984869

End: 3985609

Strand: Reverse

Name: yjgI [H]

Synonym: nfa37670

Alternate gene names: 54025737

Gene position: 3985609-3984869 (Counterclockwise)

Preceding gene: 54025739

Following gene: 54025734

Centisome position: 66.19

GC content: 71.93

Gene sequence:

>741_bases
ATGACGGTTCTGGCAGGCAAGAAGGCACTGGTCACCGGAGGTAGCCGGGGGATAGGGGCGGCGATCGCGCGCCGGCTGGC
GGCCGAGGGCGCCGACGTCGCGCTGACCTACCGCACCGCGCGATCGGCCGCCGCGCAGGTGGTGACCGACATCGAGACGA
CAGGTCGCAACGCGTTGGCGATCCACGCCGACAGCGCCGATCCCGACGCCGTCACCGAGGCCGTGCACCGTGCCGCGGAG
GCCCACGGCGGCCTCGACATCCTGGTCAACAATGCGGGCATCTTCCCGAGCAAGCCCTTCGAGGAGTTCACCCTCGACGA
GGTCGACCAGGCGCTGCACGTGCACGCCCGGGCGGCCTTCCTCGCCGCGCAGGCGGCGGTGCGGTACATGGGCGCCGGTG
GCCGGATCATCGGCATCGGCACCAACCTCACCGAGCGGGCCCCGTTCGGCGGGATCACGCTCTACAACCTCAGCAAGTCG
GCGCTCAACGGCTTCACCCGCGCGCTGGCCCGGGAACTCGGCCCGCGCGGCATCACGGTGAACCTGGTCCAGCCGGGTTC
GACCGACACCGACATGAATCCCGCCGACGGTGATCACGCGGCGGCCCAGGTCGGTCTCACCGCACTCGGCCGGTTCGGCG
CCGCCGACGACATCGCCGCGGCGGTCGCCTACCTGGCCGGGGAATCCGGGCGCAGTATCACCGGCGCCGTGCTGACCGTC
GACGGGGGCACCAACGCCTGA

Upstream 100 bases:

>100_bases
TCCTTTCTGTATCGACCGTTAAATATACCTCTTGACGACGGGGCGCCGGCGTGGTCAGCTATTTATGTATTGATCGACAC
AGAAATAGTGAGGGGTCCCG

Downstream 100 bases:

>100_bases
GCGGGGGCGACCGGGTTCAGGCCGGTTCGAAGTACCCGGCGGGGTCCAGTGTGTGCAGCGGAATCCAGCGTGGCGCAGGG
GCTTCCGCCTCGGCGCCGCG

Product: putative short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTVLAGKKALVTGGSRGIGAAIARRLAAEGADVALTYRTARSAAAQVVTDIETTGRNALAIHADSADPDAVTEAVHRAAE
AHGGLDILVNNAGIFPSKPFEEFTLDEVDQALHVHARAAFLAAQAAVRYMGAGGRIIGIGTNLTERAPFGGITLYNLSKS
ALNGFTRALARELGPRGITVNLVQPGSTDTDMNPADGDHAAAQVGLTALGRFGAADDIAAAVAYLAGESGRSITGAVLTV
DGGTNA

Sequences:

>Translated_246_residues
MTVLAGKKALVTGGSRGIGAAIARRLAAEGADVALTYRTARSAAAQVVTDIETTGRNALAIHADSADPDAVTEAVHRAAE
AHGGLDILVNNAGIFPSKPFEEFTLDEVDQALHVHARAAFLAAQAAVRYMGAGGRIIGIGTNLTERAPFGGITLYNLSKS
ALNGFTRALARELGPRGITVNLVQPGSTDTDMNPADGDHAAAQVGLTALGRFGAADDIAAAVAYLAGESGRSITGAVLTV
DGGTNA
>Mature_245_residues
TVLAGKKALVTGGSRGIGAAIARRLAAEGADVALTYRTARSAAAQVVTDIETTGRNALAIHADSADPDAVTEAVHRAAEA
HGGLDILVNNAGIFPSKPFEEFTLDEVDQALHVHARAAFLAAQAAVRYMGAGGRIIGIGTNLTERAPFGGITLYNLSKSA
LNGFTRALARELGPRGITVNLVQPGSTDTDMNPADGDHAAAQVGLTALGRFGAADDIAAAVAYLAGESGRSITGAVLTVD
GGTNA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=34.5528455284553, Blast_Score=115, Evalue=4e-26,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=31.7073170731707, Blast_Score=104, Evalue=6e-23,
Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=33.7448559670782, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI5031737, Length=244, Percent_Identity=30.327868852459, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=30.5882352941176, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=34.4262295081967, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI15277342, Length=247, Percent_Identity=31.9838056680162, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI4503817, Length=194, Percent_Identity=30.4123711340206, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI10190704, Length=248, Percent_Identity=30.241935483871, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI31542939, Length=193, Percent_Identity=32.1243523316062, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI40254986, Length=194, Percent_Identity=29.8969072164948, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4557649, Length=194, Percent_Identity=29.8969072164948, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI224922801, Length=179, Percent_Identity=30.7262569832402, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=25.3968253968254, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=44.2148760330579, Blast_Score=176, Evalue=1e-45,
Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=39.0041493775934, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1788459, Length=239, Percent_Identity=34.7280334728033, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=33.6032388663968, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=31.8548387096774, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=32.6530612244898, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=32.7935222672065, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=30.5882352941176, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082160, Length=256, Percent_Identity=30.859375, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1787905, Length=244, Percent_Identity=32.3770491803279, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=27.843137254902, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=29.2682926829268, Blast_Score=107, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=31.3008130081301, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=32.9218106995885, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=32.8063241106719, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=28.4090909090909, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17555706, Length=246, Percent_Identity=32.1138211382114, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=29.4354838709677, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=30.8943089430894, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=31.9548872180451, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=270, Percent_Identity=30.3703703703704, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=28.1368821292776, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=28.7878787878788, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71982365, Length=191, Percent_Identity=28.7958115183246, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=30.1526717557252, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=30.3030303030303, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=267, Percent_Identity=28.0898876404494, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=268, Percent_Identity=30.9701492537313, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=28.8973384030418, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=28.8973384030418, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=27.9693486590038, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=25.5639097744361, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17558628, Length=192, Percent_Identity=30.7291666666667, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=27.2030651340996, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=190, Percent_Identity=31.5789473684211, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=269, Percent_Identity=28.6245353159851, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=270, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17508651, Length=253, Percent_Identity=29.2490118577075, Blast_Score=67, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=26, Blast_Score=62, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=33.3333333333333, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=32.295719844358, Blast_Score=114, Evalue=6e-26,
Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=34.136546184739, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=32.9268292682927, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=32.2834645669291, Blast_Score=107, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=32.2709163346614, Blast_Score=100, Evalue=9e-22,
Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=28.2352941176471, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=31.8548387096774, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI116007234, Length=236, Percent_Identity=34.3220338983051, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI21357673, Length=191, Percent_Identity=27.7486910994764, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221331218, Length=202, Percent_Identity=31.6831683168317, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24665243, Length=202, Percent_Identity=31.6831683168317, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221331216, Length=202, Percent_Identity=31.1881188118812, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24641232, Length=239, Percent_Identity=29.2887029288703, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24665247, Length=202, Percent_Identity=31.1881188118812, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI116007232, Length=176, Percent_Identity=35.7954545454545, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 24898; Mature: 24767

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVLAGKKALVTGGSRGIGAAIARRLAAEGADVALTYRTARSAAAQVVTDIETTGRNALA
CCEECCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEE
IHADSADPDAVTEAVHRAAEAHGGLDILVNNAGIFPSKPFEEFTLDEVDQALHVHARAAF
EEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHH
LAAQAAVRYMGAGGRIIGIGTNLTERAPFGGITLYNLSKSALNGFTRALARELGPRGITV
HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEE
NLVQPGSTDTDMNPADGDHAAAQVGLTALGRFGAADDIAAAVAYLAGESGRSITGAVLTV
EEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
DGGTNA
CCCCCC
>Mature Secondary Structure 
TVLAGKKALVTGGSRGIGAAIARRLAAEGADVALTYRTARSAAAQVVTDIETTGRNALA
CEECCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEE
IHADSADPDAVTEAVHRAAEAHGGLDILVNNAGIFPSKPFEEFTLDEVDQALHVHARAAF
EEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHH
LAAQAAVRYMGAGGRIIGIGTNLTERAPFGGITLYNLSKSALNGFTRALARELGPRGITV
HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEE
NLVQPGSTDTDMNPADGDHAAAQVGLTALGRFGAADDIAAAVAYLAGESGRSITGAVLTV
EEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
DGGTNA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]