| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54025689
Identifier: 54025689
GI number: 54025689
Start: 3935401
End: 3936333
Strand: Reverse
Name: 54025689
Synonym: nfa37190
Alternate gene names: NA
Gene position: 3936333-3935401 (Counterclockwise)
Preceding gene: 54025691
Following gene: 54025687
Centisome position: 65.37
GC content: 71.06
Gene sequence:
>933_bases ATGGGTTGCGGGCGCCGGGCGGTGCTCGCCGAACTCGGCATCGGAGAGGCCGCCGACGCGGCGCGCGGCACCGCGATAGG CAGGTCCCAGTACAGCTGCCGCTGCCCGGGATGCGCGGACGCCCAATGGGATGTGCAGCGGCTCAAATACTGGCTGTGCG CGCGGCTGGTCGAGTTCGGCGCCGACGAGGCGGAGGTGGATCAGCGCATCGGCGGCATCCTGGTCGACGTCCGGTGGCGG CGCGGCGACCGCTGGTACGCCATCGAGGTCCGCAGCGGCGCCCTGGAGTGCACCCTGGCCCGCGAGCACACCGACCGGTT GCGCGCCGCGGGCTGCGCGGGCGTGCTGTGGTTGTGCCCGCCGGGCTACTGGGTGCGGCATCTGCCCGCGCTCGGTGTCG CCGACCTCGGCCCGGACGCCTGCGACTACCTGATCGACACCGGCATGCTCGACACCGACCAGTGCGGGCTGGCCGCACCC CGGCGCACGCCCTTCGAGCTGCGGGAGTTCCTGCGCGGGTGGGTGTCCGGCGATATCGTCTGGGGCTATCGCGACGAGAA CACCGGAGGTTGGGCGCGCGTGATCGACTGGGAGCAGCACACCAGGTCGCAGGCAACCATCATCGCCCGGCAACGTCAGG AGCTGGTCAATCAGCGGACGGCGCTGGCGGTGTCGCGCACGCTGGTGCGGGACAAGCAGAAGCAGATCGCGAAACTGCAC TGGCGGCTCGACCGCGCCGAGCAGAAGGCCCAGGAACAGGCCGACGCGGTCGCCGCGGTCAATCGCGCCCTCGCCGAGCG GCACCGGGTCGAGGACAGCCTGCGCGCCACCATCAAGGGCCTCAACCGCACGATCGAACACTGGCAGCTGATCACCATCT GCGCGATGCTGCTGATCGTGACGTTCCTGGCCGCGGCGATGATCGTCCGCTGA
Upstream 100 bases:
>100_bases GCGCGCAAAGTTAGGAGCACTCTGGATTCCATGGAGTAGGTCGCGAGACCGGCGTGTCGGGTAGGGGAGTGATCGCGTGC GGACCAAGCAGCGGACGGAG
Downstream 100 bases:
>100_bases CCGGCTCGGTCAGTCCCCGGTCGGCGGCGGCGCGCTCAGCCGGAACGGGGCACGGTCCCACCGCCAGCCGTGGCGCAGGG TGAGAGCCGCGAGGTCAAGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 310; Mature: 309
Protein sequence:
>310_residues MGCGRRAVLAELGIGEAADAARGTAIGRSQYSCRCPGCADAQWDVQRLKYWLCARLVEFGADEAEVDQRIGGILVDVRWR RGDRWYAIEVRSGALECTLAREHTDRLRAAGCAGVLWLCPPGYWVRHLPALGVADLGPDACDYLIDTGMLDTDQCGLAAP RRTPFELREFLRGWVSGDIVWGYRDENTGGWARVIDWEQHTRSQATIIARQRQELVNQRTALAVSRTLVRDKQKQIAKLH WRLDRAEQKAQEQADAVAAVNRALAERHRVEDSLRATIKGLNRTIEHWQLITICAMLLIVTFLAAAMIVR
Sequences:
>Translated_310_residues MGCGRRAVLAELGIGEAADAARGTAIGRSQYSCRCPGCADAQWDVQRLKYWLCARLVEFGADEAEVDQRIGGILVDVRWR RGDRWYAIEVRSGALECTLAREHTDRLRAAGCAGVLWLCPPGYWVRHLPALGVADLGPDACDYLIDTGMLDTDQCGLAAP RRTPFELREFLRGWVSGDIVWGYRDENTGGWARVIDWEQHTRSQATIIARQRQELVNQRTALAVSRTLVRDKQKQIAKLH WRLDRAEQKAQEQADAVAAVNRALAERHRVEDSLRATIKGLNRTIEHWQLITICAMLLIVTFLAAAMIVR >Mature_309_residues GCGRRAVLAELGIGEAADAARGTAIGRSQYSCRCPGCADAQWDVQRLKYWLCARLVEFGADEAEVDQRIGGILVDVRWRR GDRWYAIEVRSGALECTLAREHTDRLRAAGCAGVLWLCPPGYWVRHLPALGVADLGPDACDYLIDTGMLDTDQCGLAAPR RTPFELREFLRGWVSGDIVWGYRDENTGGWARVIDWEQHTRSQATIIARQRQELVNQRTALAVSRTLVRDKQKQIAKLHW RLDRAEQKAQEQADAVAAVNRALAERHRVEDSLRATIKGLNRTIEHWQLITICAMLLIVTFLAAAMIVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34829; Mature: 34698
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGCGRRAVLAELGIGEAADAARGTAIGRSQYSCRCPGCADAQWDVQRLKYWLCARLVEFG CCCCHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC ADEAEVDQRIGGILVDVRWRRGDRWYAIEVRSGALECTLAREHTDRLRAAGCAGVLWLCP CCHHHHHHHHCCEEEEEEEECCCEEEEEEEECCCEEEEEHHHHHHHHHHHCCCCEEEECC PGYWVRHLPALGVADLGPDACDYLIDTGMLDTDQCGLAAPRRTPFELREFLRGWVSGDIV CCHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE WGYRDENTGGWARVIDWEQHTRSQATIIARQRQELVNQRTALAVSRTLVRDKQKQIAKLH EEEEECCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WRLDRAEQKAQEQADAVAAVNRALAERHRVEDSLRATIKGLNRTIEHWQLITICAMLLIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TFLAAAMIVR HHHHHHHHCC >Mature Secondary Structure GCGRRAVLAELGIGEAADAARGTAIGRSQYSCRCPGCADAQWDVQRLKYWLCARLVEFG CCCHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC ADEAEVDQRIGGILVDVRWRRGDRWYAIEVRSGALECTLAREHTDRLRAAGCAGVLWLCP CCHHHHHHHHCCEEEEEEEECCCEEEEEEEECCCEEEEEHHHHHHHHHHHCCCCEEEECC PGYWVRHLPALGVADLGPDACDYLIDTGMLDTDQCGLAAPRRTPFELREFLRGWVSGDIV CCHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEE WGYRDENTGGWARVIDWEQHTRSQATIIARQRQELVNQRTALAVSRTLVRDKQKQIAKLH EEEEECCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WRLDRAEQKAQEQADAVAAVNRALAERHRVEDSLRATIKGLNRTIEHWQLITICAMLLIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TFLAAAMIVR HHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA