| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54025608
Identifier: 54025608
GI number: 54025608
Start: 3849487
End: 3850710
Strand: Reverse
Name: 54025608
Synonym: nfa36380
Alternate gene names: NA
Gene position: 3850710-3849487 (Counterclockwise)
Preceding gene: 54025610
Following gene: 54025603
Centisome position: 63.95
GC content: 71.57
Gene sequence:
>1224_bases ATGAGCAAGTTGCACGTGCTGGTCAGCGGCGGTGGCATCGCCGGGAACGCGATGGCGCTGGCATTGATTCGCTCCGGAAT CCGGACCACCGTCGTGGAGCGGGCCGCCGCGCCGCGGCCGGGCGGGCAGGCGGTGGACCTGCGCGGACCCAGCCGCGAGG TGGCCGAGCGGATGGGATTGATGCCGGGCATCACCCGCCACCGCATCGATGAGCGGGGGATGTCCTACGTGGATGGACGC GGGCGCGCCTGGGTGCGGATGCCTGTGGCGATGTTCGAGGGCAAGGGGCCGATCGCCGAGATCGAGATCACCCGCGGCGA TCTCAACCGGGTACTGCTGGACGCGCTGGCCGCGGCTCCCGGCCGACTCGACTACCGCTACGGCGAGTCGATCGACACAC TGCGTCCCGACGACGCCGGGGTGACGGTCGGCTTCACCTCCGGCGCCACCGGGCGCTTCGACCTGGTCATCGGCGCCGAC GGCGTGCACTCGGCCACCAGGCGCCTGGCGTTCGGCCCGGAGGAGAACTACAAGACCTACCTCGGTGGCTACACCTCGTA CTTCACCCTGCCCACCCCCGCCGGCGTCGAACCCGGCTGGCTGGCGATGCACACGGTGCCGGGGGCGGCGCTGGGCATTC GCCCCGATGCCGAGCCGGGCACCGCGAAAGCCGTGATCATGCTGCGCACGGCGGCCGATCCGGCATTGCGCGGCGACGTG ACCGCCCAGCAGCAGCTCATCCGCCGCATGTTGCACGGCGCGGGCTGGCTGACACCGACCGTGCTCGACGCGATGGACAC GGCGTCCGACTTCTACTTCGACGAGCTGGCCCGCATCGATATGCCGAGCCTGTCCACCGGACGGGTCGTGCTGCTCGGCG ACGCGGGCTACTGCGGCTCACCGCTGTCGGGCATGGGAACCGCGATGGCACTGGTCGGCGCCTACCTGCTCGCCGGGGAA CTCGCGGCCGATCCGGACGATCCGATGGGCGGGCTCGCGCGCTACGAGGCGCGGGTCACGCCGTTCCTGGACAAGGCCAA GGAGCTGCCGGGCGGTGGGCTGGCGATGATGGTGCCCACCACCCGGGCCGGCGTGGCGCTCACCCGCCTGGTGACCCGGG CGATGGTCGCGCGGCCCTTCCGCCCACTGCTGCTCGCCATGATGAGCGGCACCGACGACTACGAACTGCCCTCGTACGCC ACCGATTCCGCGGACCGGCGGTGA
Upstream 100 bases:
>100_bases CCGCAGGTTAGCAGCGTCTCAGACATTTGTACTAGACGAATGTGTCACCCTCTGTTAGACATTTGTCTTACACAAACGTT CAAGCAGGGAAGTGATCGTG
Downstream 100 bases:
>100_bases GCGCCGCTCAGAGCAGGATCGCGCCGCCGCTGGGGCTCTCCTCGCGGGCGATGGCCGAGTAGGCGGCCGCCAGCAGGGAC GGATCGGGGCCCTCCAGCCG
Product: putative monooxygenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MSKLHVLVSGGGIAGNAMALALIRSGIRTTVVERAAAPRPGGQAVDLRGPSREVAERMGLMPGITRHRIDERGMSYVDGR GRAWVRMPVAMFEGKGPIAEIEITRGDLNRVLLDALAAAPGRLDYRYGESIDTLRPDDAGVTVGFTSGATGRFDLVIGAD GVHSATRRLAFGPEENYKTYLGGYTSYFTLPTPAGVEPGWLAMHTVPGAALGIRPDAEPGTAKAVIMLRTAADPALRGDV TAQQQLIRRMLHGAGWLTPTVLDAMDTASDFYFDELARIDMPSLSTGRVVLLGDAGYCGSPLSGMGTAMALVGAYLLAGE LAADPDDPMGGLARYEARVTPFLDKAKELPGGGLAMMVPTTRAGVALTRLVTRAMVARPFRPLLLAMMSGTDDYELPSYA TDSADRR
Sequences:
>Translated_407_residues MSKLHVLVSGGGIAGNAMALALIRSGIRTTVVERAAAPRPGGQAVDLRGPSREVAERMGLMPGITRHRIDERGMSYVDGR GRAWVRMPVAMFEGKGPIAEIEITRGDLNRVLLDALAAAPGRLDYRYGESIDTLRPDDAGVTVGFTSGATGRFDLVIGAD GVHSATRRLAFGPEENYKTYLGGYTSYFTLPTPAGVEPGWLAMHTVPGAALGIRPDAEPGTAKAVIMLRTAADPALRGDV TAQQQLIRRMLHGAGWLTPTVLDAMDTASDFYFDELARIDMPSLSTGRVVLLGDAGYCGSPLSGMGTAMALVGAYLLAGE LAADPDDPMGGLARYEARVTPFLDKAKELPGGGLAMMVPTTRAGVALTRLVTRAMVARPFRPLLLAMMSGTDDYELPSYA TDSADRR >Mature_406_residues SKLHVLVSGGGIAGNAMALALIRSGIRTTVVERAAAPRPGGQAVDLRGPSREVAERMGLMPGITRHRIDERGMSYVDGRG RAWVRMPVAMFEGKGPIAEIEITRGDLNRVLLDALAAAPGRLDYRYGESIDTLRPDDAGVTVGFTSGATGRFDLVIGADG VHSATRRLAFGPEENYKTYLGGYTSYFTLPTPAGVEPGWLAMHTVPGAALGIRPDAEPGTAKAVIMLRTAADPALRGDVT AQQQLIRRMLHGAGWLTPTVLDAMDTASDFYFDELARIDMPSLSTGRVVLLGDAGYCGSPLSGMGTAMALVGAYLLAGEL AADPDDPMGGLARYEARVTPFLDKAKELPGGGLAMMVPTTRAGVALTRLVTRAMVARPFRPLLLAMMSGTDDYELPSYAT DSADRR
Specific function: Unknown
COG id: COG0654
COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002938 - InterPro: IPR003042 [H]
Pfam domain/function: PF01494 FAD_binding_3 [H]
EC number: NA
Molecular weight: Translated: 43108; Mature: 42977
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLHVLVSGGGIAGNAMALALIRSGIRTTVVERAAAPRPGGQAVDLRGPSREVAERMGL CCCEEEEEECCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHCC MPGITRHRIDERGMSYVDGRGRAWVRMPVAMFEGKGPIAEIEITRGDLNRVLLDALAAAP CCCHHHHHHHHCCCCEECCCCCEEEEEEHHEECCCCCEEEEEEEHHHHHHHHHHHHHCCC GRLDYRYGESIDTLRPDDAGVTVGFTSGATGRFDLVIGADGVHSATRRLAFGPEENYKTY CCCEECCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCHHH LGGYTSYFTLPTPAGVEPGWLAMHTVPGAALGIRPDAEPGTAKAVIMLRTAADPALRGDV CCCCEEEEECCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCC TAQQQLIRRMLHGAGWLTPTVLDAMDTASDFYFDELARIDMPSLSTGRVVLLGDAGYCGS HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC PLSGMGTAMALVGAYLLAGELAADPDDPMGGLARYEARVTPFLDKAKELPGGGLAMMVPT CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCEEEEECC TRAGVALTRLVTRAMVARPFRPLLLAMMSGTDDYELPSYATDSADRR CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SKLHVLVSGGGIAGNAMALALIRSGIRTTVVERAAAPRPGGQAVDLRGPSREVAERMGL CCEEEEEECCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHCC MPGITRHRIDERGMSYVDGRGRAWVRMPVAMFEGKGPIAEIEITRGDLNRVLLDALAAAP CCCHHHHHHHHCCCCEECCCCCEEEEEEHHEECCCCCEEEEEEEHHHHHHHHHHHHHCCC GRLDYRYGESIDTLRPDDAGVTVGFTSGATGRFDLVIGADGVHSATRRLAFGPEENYKTY CCCEECCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCHHH LGGYTSYFTLPTPAGVEPGWLAMHTVPGAALGIRPDAEPGTAKAVIMLRTAADPALRGDV CCCCEEEEECCCCCCCCCCEEEEECCCCCEECCCCCCCCCCCEEEEEEEECCCCCCCCCC TAQQQLIRRMLHGAGWLTPTVLDAMDTASDFYFDELARIDMPSLSTGRVVLLGDAGYCGS HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCC PLSGMGTAMALVGAYLLAGELAADPDDPMGGLARYEARVTPFLDKAKELPGGGLAMMVPT CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHCCCCCEEEEECC TRAGVALTRLVTRAMVARPFRPLLLAMMSGTDDYELPSYATDSADRR CHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]