| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54025580
Identifier: 54025580
GI number: 54025580
Start: 3820481
End: 3821530
Strand: Reverse
Name: 54025580
Synonym: nfa36100
Alternate gene names: NA
Gene position: 3821530-3820481 (Counterclockwise)
Preceding gene: 54025581
Following gene: 54025579
Centisome position: 63.47
GC content: 72.29
Gene sequence:
>1050_bases ATGCGCGACGGGCGCGGCCGGGGAGATCATTGTGAGGTGCGACAAAAGTTCGAGCGGCGGAGTCGGGGCGGGTCACAATG GCTGCGCCGCGCCACCGCCGGTGTCTTCGCGGCGACGGCGATCCTCGCCGCGGCCACCGTCACGGCGGCGGACCCCGGCG GCATCGGCCCGCCCGACGTCCCCACCCAGCCCGGCCCGCCGCAGCCGGACCACCTCGCCGCCGCGCTGTACCAGAGGCAG CACCGCGACGTCACCCCGTCGGGCACCAACGATTTCGGCTGCGTTCCGGATCCGGAGCGGCCGCGGCCGGTGATCCTCGC GCACGGCACCGACTCGAGCGCCTACTCGGACTGGTCGGCGATCGGGCCCCGGCTCGCCGCGGCCGGGTTCTGCGTCTTCG CGCTCAATTACGGTGGCGCGCCGGGCGCCCAGACGTACGGCACCGAGGACCTGCTCGCCAGCGCCGCCCAGATCGGCGTC TTCGTGGACCGGGTGCGCGCGGCCACCGGCGCCGACAAGGTCGATCTGGTGGGATTCTCCCAGGGCGCCACCGTGACTCG CTACTACGTCAACAAGCTCGGCGGCGCACCGAACGTCGGCCACTGGGTCGGCTTGGCCTCGCCGACCTACGGCGGGGTCA TGTACGGGCTGGTGCCGGTGGCGCAGGCGATACCCGGCCTGCTCGACGCCGTCGCCCGGGTCACCTCCCTCGCCGCGGTG CAGCAGGCGCAGGGCTCGGAGGTGATGCTCGCGGTCAACGCGGGCGGCGACACCGTCCCCGGCGTCGAGTACACCACCGT GGGCAGCCGGGTGGACGAGATGATCCAGCCCTTCGAGAACATTGCCTTGCGCGGGCCGGGCGCCCGCAATCTGGCGTTGC AGGATCTGTGCCCGCAGAACCTCACCGGCCACTTCCACATGGTGTACGACCCGTTCGTCGCCGATCTGCTGCTGACCGTG CTCGACCCCGGCCACGCGCCCGAGCCGGTCTGCGAGCCGGTTCCGCTGGGTACGGGGATACCGCAGGTGATCATCGCGGG CAATTCCTGA
Upstream 100 bases:
>100_bases AGGCGGCCGAGGTGCTCACCGAGGCCCGCAGGTCGCTGTATCGCATCCTCGCCGAGGACGACGCACCCGAATCGTGACCG ATCGGTAGTGCTCGTTCGAG
Downstream 100 bases:
>100_bases GCGGAACCGGCTCGGACGGGGCGGGCCCCATCCGGAGCGCCGGAGGGGCGTGCCGGCTCACTAGAATGAACGGACCGTAT TCGTCGTTCTGCCGGGAGCC
Product: putative lipase
Products: NA
Alternate protein names: Triacylglycerol Lipase; Secreted Lipase; Acetyltransferase; Alpha/Beta Hydrolase Fold-Like Protein
Number of amino acids: Translated: 349; Mature: 349
Protein sequence:
>349_residues MRDGRGRGDHCEVRQKFERRSRGGSQWLRRATAGVFAATAILAAATVTAADPGGIGPPDVPTQPGPPQPDHLAAALYQRQ HRDVTPSGTNDFGCVPDPERPRPVILAHGTDSSAYSDWSAIGPRLAAAGFCVFALNYGGAPGAQTYGTEDLLASAAQIGV FVDRVRAATGADKVDLVGFSQGATVTRYYVNKLGGAPNVGHWVGLASPTYGGVMYGLVPVAQAIPGLLDAVARVTSLAAV QQAQGSEVMLAVNAGGDTVPGVEYTTVGSRVDEMIQPFENIALRGPGARNLALQDLCPQNLTGHFHMVYDPFVADLLLTV LDPGHAPEPVCEPVPLGTGIPQVIIAGNS
Sequences:
>Translated_349_residues MRDGRGRGDHCEVRQKFERRSRGGSQWLRRATAGVFAATAILAAATVTAADPGGIGPPDVPTQPGPPQPDHLAAALYQRQ HRDVTPSGTNDFGCVPDPERPRPVILAHGTDSSAYSDWSAIGPRLAAAGFCVFALNYGGAPGAQTYGTEDLLASAAQIGV FVDRVRAATGADKVDLVGFSQGATVTRYYVNKLGGAPNVGHWVGLASPTYGGVMYGLVPVAQAIPGLLDAVARVTSLAAV QQAQGSEVMLAVNAGGDTVPGVEYTTVGSRVDEMIQPFENIALRGPGARNLALQDLCPQNLTGHFHMVYDPFVADLLLTV LDPGHAPEPVCEPVPLGTGIPQVIIAGNS >Mature_349_residues MRDGRGRGDHCEVRQKFERRSRGGSQWLRRATAGVFAATAILAAATVTAADPGGIGPPDVPTQPGPPQPDHLAAALYQRQ HRDVTPSGTNDFGCVPDPERPRPVILAHGTDSSAYSDWSAIGPRLAAAGFCVFALNYGGAPGAQTYGTEDLLASAAQIGV FVDRVRAATGADKVDLVGFSQGATVTRYYVNKLGGAPNVGHWVGLASPTYGGVMYGLVPVAQAIPGLLDAVARVTSLAAV QQAQGSEVMLAVNAGGDTVPGVEYTTVGSRVDEMIQPFENIALRGPGARNLALQDLCPQNLTGHFHMVYDPFVADLLLTV LDPGHAPEPVCEPVPLGTGIPQVIIAGNS
Specific function: Unknown
COG id: COG1075
COG function: function code R; Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36275; Mature: 36275
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDGRGRGDHCEVRQKFERRSRGGSQWLRRATAGVFAATAILAAATVTAADPGGIGPPDV CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC PTQPGPPQPDHLAAALYQRQHRDVTPSGTNDFGCVPDPERPRPVILAHGTDSSAYSDWSA CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHH IGPRLAAAGFCVFALNYGGAPGAQTYGTEDLLASAAQIGVFVDRVRAATGADKVDLVGFS HHHHHHHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC QGATVTRYYVNKLGGAPNVGHWVGLASPTYGGVMYGLVPVAQAIPGLLDAVARVTSLAAV CCCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQAQGSEVMLAVNAGGDTVPGVEYTTVGSRVDEMIQPFENIALRGPGARNLALQDLCPQN HHCCCCEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHEECCCCCCCCHHHHCCCCC LTGHFHMVYDPFVADLLLTVLDPGHAPEPVCEPVPLGTGIPQVIIAGNS CCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCC >Mature Secondary Structure MRDGRGRGDHCEVRQKFERRSRGGSQWLRRATAGVFAATAILAAATVTAADPGGIGPPDV CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC PTQPGPPQPDHLAAALYQRQHRDVTPSGTNDFGCVPDPERPRPVILAHGTDSSAYSDWSA CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHH IGPRLAAAGFCVFALNYGGAPGAQTYGTEDLLASAAQIGVFVDRVRAATGADKVDLVGFS HHHHHHHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC QGATVTRYYVNKLGGAPNVGHWVGLASPTYGGVMYGLVPVAQAIPGLLDAVARVTSLAAV CCCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQAQGSEVMLAVNAGGDTVPGVEYTTVGSRVDEMIQPFENIALRGPGARNLALQDLCPQN HHCCCCEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHEECCCCCCCCHHHHCCCCC LTGHFHMVYDPFVADLLLTVLDPGHAPEPVCEPVPLGTGIPQVIIAGNS CCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA