Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

Click here to switch to the map view.

The map label for this gene is 54025580

Identifier: 54025580

GI number: 54025580

Start: 3820481

End: 3821530

Strand: Reverse

Name: 54025580

Synonym: nfa36100

Alternate gene names: NA

Gene position: 3821530-3820481 (Counterclockwise)

Preceding gene: 54025581

Following gene: 54025579

Centisome position: 63.47

GC content: 72.29

Gene sequence:

>1050_bases
ATGCGCGACGGGCGCGGCCGGGGAGATCATTGTGAGGTGCGACAAAAGTTCGAGCGGCGGAGTCGGGGCGGGTCACAATG
GCTGCGCCGCGCCACCGCCGGTGTCTTCGCGGCGACGGCGATCCTCGCCGCGGCCACCGTCACGGCGGCGGACCCCGGCG
GCATCGGCCCGCCCGACGTCCCCACCCAGCCCGGCCCGCCGCAGCCGGACCACCTCGCCGCCGCGCTGTACCAGAGGCAG
CACCGCGACGTCACCCCGTCGGGCACCAACGATTTCGGCTGCGTTCCGGATCCGGAGCGGCCGCGGCCGGTGATCCTCGC
GCACGGCACCGACTCGAGCGCCTACTCGGACTGGTCGGCGATCGGGCCCCGGCTCGCCGCGGCCGGGTTCTGCGTCTTCG
CGCTCAATTACGGTGGCGCGCCGGGCGCCCAGACGTACGGCACCGAGGACCTGCTCGCCAGCGCCGCCCAGATCGGCGTC
TTCGTGGACCGGGTGCGCGCGGCCACCGGCGCCGACAAGGTCGATCTGGTGGGATTCTCCCAGGGCGCCACCGTGACTCG
CTACTACGTCAACAAGCTCGGCGGCGCACCGAACGTCGGCCACTGGGTCGGCTTGGCCTCGCCGACCTACGGCGGGGTCA
TGTACGGGCTGGTGCCGGTGGCGCAGGCGATACCCGGCCTGCTCGACGCCGTCGCCCGGGTCACCTCCCTCGCCGCGGTG
CAGCAGGCGCAGGGCTCGGAGGTGATGCTCGCGGTCAACGCGGGCGGCGACACCGTCCCCGGCGTCGAGTACACCACCGT
GGGCAGCCGGGTGGACGAGATGATCCAGCCCTTCGAGAACATTGCCTTGCGCGGGCCGGGCGCCCGCAATCTGGCGTTGC
AGGATCTGTGCCCGCAGAACCTCACCGGCCACTTCCACATGGTGTACGACCCGTTCGTCGCCGATCTGCTGCTGACCGTG
CTCGACCCCGGCCACGCGCCCGAGCCGGTCTGCGAGCCGGTTCCGCTGGGTACGGGGATACCGCAGGTGATCATCGCGGG
CAATTCCTGA

Upstream 100 bases:

>100_bases
AGGCGGCCGAGGTGCTCACCGAGGCCCGCAGGTCGCTGTATCGCATCCTCGCCGAGGACGACGCACCCGAATCGTGACCG
ATCGGTAGTGCTCGTTCGAG

Downstream 100 bases:

>100_bases
GCGGAACCGGCTCGGACGGGGCGGGCCCCATCCGGAGCGCCGGAGGGGCGTGCCGGCTCACTAGAATGAACGGACCGTAT
TCGTCGTTCTGCCGGGAGCC

Product: putative lipase

Products: NA

Alternate protein names: Triacylglycerol Lipase; Secreted Lipase; Acetyltransferase; Alpha/Beta Hydrolase Fold-Like Protein

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MRDGRGRGDHCEVRQKFERRSRGGSQWLRRATAGVFAATAILAAATVTAADPGGIGPPDVPTQPGPPQPDHLAAALYQRQ
HRDVTPSGTNDFGCVPDPERPRPVILAHGTDSSAYSDWSAIGPRLAAAGFCVFALNYGGAPGAQTYGTEDLLASAAQIGV
FVDRVRAATGADKVDLVGFSQGATVTRYYVNKLGGAPNVGHWVGLASPTYGGVMYGLVPVAQAIPGLLDAVARVTSLAAV
QQAQGSEVMLAVNAGGDTVPGVEYTTVGSRVDEMIQPFENIALRGPGARNLALQDLCPQNLTGHFHMVYDPFVADLLLTV
LDPGHAPEPVCEPVPLGTGIPQVIIAGNS

Sequences:

>Translated_349_residues
MRDGRGRGDHCEVRQKFERRSRGGSQWLRRATAGVFAATAILAAATVTAADPGGIGPPDVPTQPGPPQPDHLAAALYQRQ
HRDVTPSGTNDFGCVPDPERPRPVILAHGTDSSAYSDWSAIGPRLAAAGFCVFALNYGGAPGAQTYGTEDLLASAAQIGV
FVDRVRAATGADKVDLVGFSQGATVTRYYVNKLGGAPNVGHWVGLASPTYGGVMYGLVPVAQAIPGLLDAVARVTSLAAV
QQAQGSEVMLAVNAGGDTVPGVEYTTVGSRVDEMIQPFENIALRGPGARNLALQDLCPQNLTGHFHMVYDPFVADLLLTV
LDPGHAPEPVCEPVPLGTGIPQVIIAGNS
>Mature_349_residues
MRDGRGRGDHCEVRQKFERRSRGGSQWLRRATAGVFAATAILAAATVTAADPGGIGPPDVPTQPGPPQPDHLAAALYQRQ
HRDVTPSGTNDFGCVPDPERPRPVILAHGTDSSAYSDWSAIGPRLAAAGFCVFALNYGGAPGAQTYGTEDLLASAAQIGV
FVDRVRAATGADKVDLVGFSQGATVTRYYVNKLGGAPNVGHWVGLASPTYGGVMYGLVPVAQAIPGLLDAVARVTSLAAV
QQAQGSEVMLAVNAGGDTVPGVEYTTVGSRVDEMIQPFENIALRGPGARNLALQDLCPQNLTGHFHMVYDPFVADLLLTV
LDPGHAPEPVCEPVPLGTGIPQVIIAGNS

Specific function: Unknown

COG id: COG1075

COG function: function code R; Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36275; Mature: 36275

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDGRGRGDHCEVRQKFERRSRGGSQWLRRATAGVFAATAILAAATVTAADPGGIGPPDV
CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PTQPGPPQPDHLAAALYQRQHRDVTPSGTNDFGCVPDPERPRPVILAHGTDSSAYSDWSA
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHH
IGPRLAAAGFCVFALNYGGAPGAQTYGTEDLLASAAQIGVFVDRVRAATGADKVDLVGFS
HHHHHHHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
QGATVTRYYVNKLGGAPNVGHWVGLASPTYGGVMYGLVPVAQAIPGLLDAVARVTSLAAV
CCCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQAQGSEVMLAVNAGGDTVPGVEYTTVGSRVDEMIQPFENIALRGPGARNLALQDLCPQN
HHCCCCEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHEECCCCCCCCHHHHCCCCC
LTGHFHMVYDPFVADLLLTVLDPGHAPEPVCEPVPLGTGIPQVIIAGNS
CCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCC
>Mature Secondary Structure
MRDGRGRGDHCEVRQKFERRSRGGSQWLRRATAGVFAATAILAAATVTAADPGGIGPPDV
CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PTQPGPPQPDHLAAALYQRQHRDVTPSGTNDFGCVPDPERPRPVILAHGTDSSAYSDWSA
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHH
IGPRLAAAGFCVFALNYGGAPGAQTYGTEDLLASAAQIGVFVDRVRAATGADKVDLVGFS
HHHHHHHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
QGATVTRYYVNKLGGAPNVGHWVGLASPTYGGVMYGLVPVAQAIPGLLDAVARVTSLAAV
CCCHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QQAQGSEVMLAVNAGGDTVPGVEYTTVGSRVDEMIQPFENIALRGPGARNLALQDLCPQN
HHCCCCEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHEECCCCCCCCHHHHCCCCC
LTGHFHMVYDPFVADLLLTVLDPGHAPEPVCEPVPLGTGIPQVIIAGNS
CCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA