Definition Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession NC_006361
Length 6,021,225

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The map label for this gene is 54025565

Identifier: 54025565

GI number: 54025565

Start: 3806328

End: 3807023

Strand: Reverse

Name: 54025565

Synonym: nfa35950

Alternate gene names: NA

Gene position: 3807023-3806328 (Counterclockwise)

Preceding gene: 54025568

Following gene: 54025564

Centisome position: 63.23

GC content: 71.55

Gene sequence:

>696_bases
GTGGCGATCGAGGCGGTGTTGTTCGACTTCTCCGGCACGCTCTTCCGATTGGAGGAGGATCCCTCCTGGACCGACGAACT
CGTCGACGCGGACGGCCGCGCGTTCGACGTACACGAGAAGGCCGAGATCCTGCGCCGGATGACAGCGCCCGTGCAGCAAC
TCGTCGAGTTCGACGAGGCCGGTCAGTACGCCTGGGACAACCGGGATCTCGACCCGGCCCTGCACCGGCGCGCCTATCTG
GAAGTGCTGCGGAAATCCGGGGTGCCCACCGAGGAGCAGGCGGCGCGGTTGTACGGGCGGCTGATCGACCCGCTGGCCTG
GACCCCCTATCCCGACACCGGGACCGTGCTGGAATTCCTTGCCGGCCACGGCGTCCGGACGGCCGTGGTCAGCAACATCG
CCTTCGACGTGCGCCCGGCCTTCGCGACCCGCGGCTGGGATGCCCTCCTGGACGCGGTGACGCTGTCGTACGAGGTCGGC
GCGATCAAGCCGGACCCGCGCATCTTCCGCGCCGCGCTGGACAAGCTCGGTGTGGCGCCGGAGGCGGCGCTCATGGTGGG
CGACAGCGCGGTGGCCGACGGCGGCGCGAGCGCACTGGGCTGCCGGTTCGCGCTGGTGGACCCGCTGCCCACCGCCGAGC
GTCCCGACGCCCTGGTCGACGCGTTGCGCGCGCACGGGCTGGCCGTCCCGCGCTGA

Upstream 100 bases:

>100_bases
CAAGACAAAGTCTTTCGCTCGCGGTGAACGGAAATGTTGCCGGATCGTGTCGCGACACGCGGGCCGCGATGCGGGCACGC
CGTATCGGTAGGCTGGCCGC

Downstream 100 bases:

>100_bases
CCAGCGCGCGCCGGGCTGTCGGAGGCGGTCGATAGGCTGGTCACGTGGCAGATCCAGCGACGTACCGGCCCGCGCCGGGC
ACCATCCCCGTCGAGCCGGG

Product: putative hydrolase

Products: NA

Alternate protein names: HAD Family Hydrolase; Haloacid Dehalogenase Domain Protein Hydrolase; HAD-Superfamily Hydrolase Subfamily IA; HAD-Superfamily Hydrolase; Haloacid Dehalogenase Domain-Containing Protein Hydrolase; Haloacid Dehalogenase Superfamily Protein

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MAIEAVLFDFSGTLFRLEEDPSWTDELVDADGRAFDVHEKAEILRRMTAPVQQLVEFDEAGQYAWDNRDLDPALHRRAYL
EVLRKSGVPTEEQAARLYGRLIDPLAWTPYPDTGTVLEFLAGHGVRTAVVSNIAFDVRPAFATRGWDALLDAVTLSYEVG
AIKPDPRIFRAALDKLGVAPEAALMVGDSAVADGGASALGCRFALVDPLPTAERPDALVDALRAHGLAVPR

Sequences:

>Translated_231_residues
MAIEAVLFDFSGTLFRLEEDPSWTDELVDADGRAFDVHEKAEILRRMTAPVQQLVEFDEAGQYAWDNRDLDPALHRRAYL
EVLRKSGVPTEEQAARLYGRLIDPLAWTPYPDTGTVLEFLAGHGVRTAVVSNIAFDVRPAFATRGWDALLDAVTLSYEVG
AIKPDPRIFRAALDKLGVAPEAALMVGDSAVADGGASALGCRFALVDPLPTAERPDALVDALRAHGLAVPR
>Mature_230_residues
AIEAVLFDFSGTLFRLEEDPSWTDELVDADGRAFDVHEKAEILRRMTAPVQQLVEFDEAGQYAWDNRDLDPALHRRAYLE
VLRKSGVPTEEQAARLYGRLIDPLAWTPYPDTGTVLEFLAGHGVRTAVVSNIAFDVRPAFATRGWDALLDAVTLSYEVGA
IKPDPRIFRAALDKLGVAPEAALMVGDSAVADGGASALGCRFALVDPLPTAERPDALVDALRAHGLAVPR

Specific function: Unknown

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25153; Mature: 25021

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIEAVLFDFSGTLFRLEEDPSWTDELVDADGRAFDVHEKAEILRRMTAPVQQLVEFDEA
CCCEEEEEECCCCEEEEECCCCHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHC
GQYAWDNRDLDPALHRRAYLEVLRKSGVPTEEQAARLYGRLIDPLAWTPYPDTGTVLEFL
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
AGHGVRTAVVSNIAFDVRPAFATRGWDALLDAVTLSYEVGAIKPDPRIFRAALDKLGVAP
HCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
EAALMVGDSAVADGGASALGCRFALVDPLPTAERPDALVDALRAHGLAVPR
CHHEEECCCHHCCCCCHHHHEEEEEECCCCCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AIEAVLFDFSGTLFRLEEDPSWTDELVDADGRAFDVHEKAEILRRMTAPVQQLVEFDEA
CCEEEEEECCCCEEEEECCCCHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHC
GQYAWDNRDLDPALHRRAYLEVLRKSGVPTEEQAARLYGRLIDPLAWTPYPDTGTVLEFL
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
AGHGVRTAVVSNIAFDVRPAFATRGWDALLDAVTLSYEVGAIKPDPRIFRAALDKLGVAP
HCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
EAALMVGDSAVADGGASALGCRFALVDPLPTAERPDALVDALRAHGLAVPR
CHHEEECCCHHCCCCCHHHHEEEEEECCCCCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA