| Definition | Nocardia farcinica IFM 10152 chromosome, complete genome. |
|---|---|
| Accession | NC_006361 |
| Length | 6,021,225 |
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The map label for this gene is 54025452
Identifier: 54025452
GI number: 54025452
Start: 3692210
End: 3692800
Strand: Reverse
Name: 54025452
Synonym: nfa34820
Alternate gene names: NA
Gene position: 3692800-3692210 (Counterclockwise)
Preceding gene: 54025457
Following gene: 54025451
Centisome position: 61.33
GC content: 68.53
Gene sequence:
>591_bases GTGGCTGGACAGACCGGATGGAAGATGGCCCCCTCGCACACCTCGGTTTTCTCCCCGCTCGCCGCGGAACTGCCGCCCAC CGTCGACGCGAACACCCTGGAGTCGATCAAGGAGGACGTCGCCGACAACCATGTGGCGGCGCCGAAGGGCAAGGACCAGT CCGGACTCGAGGCGATCGTGGCCGAAGCGCGAGCCGAGGGCATCCCGCTGAGCATCGTGGTGATTCCCGGCAATCCCGGT CACGACTCCAATCTACGGGACCTGGCCACCGAGGTCGGCAAGACCGAGCAGGGCACCGTGGTGGTCCTCAGTGACGACTG GGTGGGCACCTACAGCGATTCGATCAGCCGGGTCAAGCTCGAGTGGGCCGAGGACGCGGCCAAGAGCAAACAGGGCAACT CGGTGGAGGCCGCGCGCATCTTCGTCGACCGGCTCGAACAGCCGGAGACCTTCTCCTGGACCGCCATCACCGGTGTGCTC ATCGCGGGCACCGCGCTGGCGGTGGCAGGTCTCCATCTGATCAAGGCGCGCCGCGCCGCCGCGCAGGAGCGGCCCGCCGT CGCCGAGCGGGACACCGCCACCATCGCCTGA
Upstream 100 bases:
>100_bases TGCGGGGTGCGGTCGGCGTGGCGTGGGCGAACACCCGGTGACCGCGTGACGTACTGTGCTCTGGCAGTGTTGGATGCCCG CCGCCGCGCACCTCGGTGAC
Downstream 100 bases:
>100_bases TTCTCGACCGGCGCCGCGTCCGTCGGGGAGTTTTCCAGACGGTCGGTATGTTTTCCGGCAGCAAACCCGAACTCGTATCC GGCTAATGCCCGGCAACGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MAGQTGWKMAPSHTSVFSPLAAELPPTVDANTLESIKEDVADNHVAAPKGKDQSGLEAIVAEARAEGIPLSIVVIPGNPG HDSNLRDLATEVGKTEQGTVVVLSDDWVGTYSDSISRVKLEWAEDAAKSKQGNSVEAARIFVDRLEQPETFSWTAITGVL IAGTALAVAGLHLIKARRAAAQERPAVAERDTATIA
Sequences:
>Translated_196_residues MAGQTGWKMAPSHTSVFSPLAAELPPTVDANTLESIKEDVADNHVAAPKGKDQSGLEAIVAEARAEGIPLSIVVIPGNPG HDSNLRDLATEVGKTEQGTVVVLSDDWVGTYSDSISRVKLEWAEDAAKSKQGNSVEAARIFVDRLEQPETFSWTAITGVL IAGTALAVAGLHLIKARRAAAQERPAVAERDTATIA >Mature_195_residues AGQTGWKMAPSHTSVFSPLAAELPPTVDANTLESIKEDVADNHVAAPKGKDQSGLEAIVAEARAEGIPLSIVVIPGNPGH DSNLRDLATEVGKTEQGTVVVLSDDWVGTYSDSISRVKLEWAEDAAKSKQGNSVEAARIFVDRLEQPETFSWTAITGVLI AGTALAVAGLHLIKARRAAAQERPAVAERDTATIA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20616; Mature: 20485
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGQTGWKMAPSHTSVFSPLAAELPPTVDANTLESIKEDVADNHVAAPKGKDQSGLEAIV CCCCCCCEECCCCHHHHCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH AEARAEGIPLSIVVIPGNPGHDSNLRDLATEVGKTEQGTVVVLSDDWVGTYSDSISRVKL HHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHEEEE EWAEDAAKSKQGNSVEAARIFVDRLEQPETFSWTAITGVLIAGTALAVAGLHLIKARRAA HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQERPAVAERDTATIA HHCCCCCCCCCCCCCC >Mature Secondary Structure AGQTGWKMAPSHTSVFSPLAAELPPTVDANTLESIKEDVADNHVAAPKGKDQSGLEAIV CCCCCCEECCCCHHHHCCHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH AEARAEGIPLSIVVIPGNPGHDSNLRDLATEVGKTEQGTVVVLSDDWVGTYSDSISRVKL HHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHEEEE EWAEDAAKSKQGNSVEAARIFVDRLEQPETFSWTAITGVLIAGTALAVAGLHLIKARRAA HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQERPAVAERDTATIA HHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA