BacMap

Definition	Nocardia farcinica IFM 10152 chromosome, complete genome.
Accession	NC_006361
Length	6,021,225

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The map label for this gene is fabG [H]

Identifier: 54025447

GI number: 54025447

Start: 3686339

End: 3687061

Strand: Reverse

Name: fabG [H]

Synonym: nfa34770

Alternate gene names: 54025447

Gene position: 3687061-3686339 (Counterclockwise)

Preceding gene: 54025448

Following gene: 54025446

Centisome position: 61.23

GC content: 69.02

Gene sequence:

>723_bases
ATGACCAACATCACATCGCGATCGGTCCTGGTGACCGGCGGAAACCGCGGCATCGGCCTCGCGGTCGCGCGACGCCTGCT
CGCCGACGGTCACAAGGTCGCCGTCACCCATCGTGGCTCGGGTGTGCCGGACGGCCTGTTCGGCGTCAAGTGCGACGTCA
CCGACACCGAGTCGGTCGACCGCGCCTTCGCCGAGGTCGAGGCGCACCAGGGGCCGGTGGAGGTGCTGGTGGCCAACGCG
GGCATCGTCGCCAACACCTTGCTCATGCGGATGAGCGACGAGCAGTTCACCAGCGTGATCGACGCCAACCTCACCGGCGC
GTGGCGCTGCGCCAAGCGCGCCAACCGAGCGATGCTGCGGGCCAAGTTCGGCCGGATCATCTTCCTCGGCTCGGTCGTCG
GCCTCGGCGGCGGTCCCGGCCAGGTCAACTACGCGGCGTCCAAGTCGGGCCTGATCGGGATGGCGCGATCGATCACCCGT
GAGATCGGGTCGCGCAACATCACCGCCAACGTGGTCGCCCCCGGCTTCATCGAGACCGACATGACTCGTGACGAGGTCAC
CGAGGAGATGCGCGAGGTCGTGCTGAAGTACGGTGTGCCCGCGGGCCGTCCGGGTCAGCCCGAGGAGGTGGCCGCCGCGA
TCAGCTTCCTCGCCTCCGACGACGCCTCCTACATCAACGGCGCGGTGATCCCGGTCGACGGCGGCATGGGCATGGGCCAC
TAG

Upstream 100 bases:

>100_bases
CTATCGTCAACGCCTGCCGTAGCCGCACGCCGTTGTGGCATCGCACAAGGTGCGCTGCCCGCACGCGGACGCAGGAATTC
GAACAGATAGGTTAACTCCC

Downstream 100 bases:

>100_bases
TATCCCGCTGGCCCGCAGCAACGGACTTTCGACATCAGGAGAACCGAGAAACTCATGGGCGGACTGCTCGAAGGCAAGAC
CATCCTGGTCACCGGCATCA

Product: putative 3-oxoacyl-ACP reductase

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MTNITSRSVLVTGGNRGIGLAVARRLLADGHKVAVTHRGSGVPDGLFGVKCDVTDTESVDRAFAEVEAHQGPVEVLVANA
GIVANTLLMRMSDEQFTSVIDANLTGAWRCAKRANRAMLRAKFGRIIFLGSVVGLGGGPGQVNYAASKSGLIGMARSITR
EIGSRNITANVVAPGFIETDMTRDEVTEEMREVVLKYGVPAGRPGQPEEVAAAISFLASDDASYINGAVIPVDGGMGMGH

Sequences:

>Translated_240_residues
MTNITSRSVLVTGGNRGIGLAVARRLLADGHKVAVTHRGSGVPDGLFGVKCDVTDTESVDRAFAEVEAHQGPVEVLVANA
GIVANTLLMRMSDEQFTSVIDANLTGAWRCAKRANRAMLRAKFGRIIFLGSVVGLGGGPGQVNYAASKSGLIGMARSITR
EIGSRNITANVVAPGFIETDMTRDEVTEEMREVVLKYGVPAGRPGQPEEVAAAISFLASDDASYINGAVIPVDGGMGMGH
>Mature_239_residues
TNITSRSVLVTGGNRGIGLAVARRLLADGHKVAVTHRGSGVPDGLFGVKCDVTDTESVDRAFAEVEAHQGPVEVLVANAG
IVANTLLMRMSDEQFTSVIDANLTGAWRCAKRANRAMLRAKFGRIIFLGSVVGLGGGPGQVNYAASKSGLIGMARSITRE
IGSRNITANVVAPGFIETDMTRDEVTEEMREVVLKYGVPAGRPGQPEEVAAAISFLASDDASYINGAVIPVDGGMGMGH

Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=236, Percent_Identity=41.1016949152542, Blast_Score=160, Evalue=8e-40,
Organism=Homo sapiens, GI15277342, Length=252, Percent_Identity=36.1111111111111, Blast_Score=125, Evalue=2e-29,
Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=30.4878048780488, Blast_Score=115, Evalue=3e-26,
Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=30.241935483871, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=28.9795918367347, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI7705925, Length=238, Percent_Identity=27.3109243697479, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI19923817, Length=248, Percent_Identity=26.6129032258064, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI4504505, Length=247, Percent_Identity=29.9595141700405, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI31542939, Length=262, Percent_Identity=26.3358778625954, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI4503301, Length=222, Percent_Identity=28.3783783783784, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4758504, Length=249, Percent_Identity=28.1124497991968, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI210032110, Length=195, Percent_Identity=29.2307692307692, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI66933014, Length=193, Percent_Identity=27.4611398963731, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI109715829, Length=241, Percent_Identity=24.896265560166, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI59889578, Length=206, Percent_Identity=29.6116504854369, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=33.1578947368421, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=27.319587628866, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI20149619, Length=221, Percent_Identity=26.6968325791855, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI142976729, Length=213, Percent_Identity=28.169014084507, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI40807363, Length=195, Percent_Identity=28.2051282051282, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI126723191, Length=194, Percent_Identity=26.8041237113402, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=47.5409836065574, Blast_Score=205, Evalue=2e-54,
Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=37.1900826446281, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI2367175, Length=243, Percent_Identity=34.9794238683128, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=30.5555555555556, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=29.5546558704453, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI87082160, Length=244, Percent_Identity=30.7377049180328, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789208, Length=178, Percent_Identity=33.1460674157303, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786812, Length=246, Percent_Identity=30.4878048780488, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789378, Length=256, Percent_Identity=27.734375, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=25.8196721311475, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1786701, Length=195, Percent_Identity=34.3589743589744, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787905, Length=241, Percent_Identity=26.1410788381743, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789057, Length=253, Percent_Identity=26.8774703557312, Blast_Score=69, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=35.8870967741936, Blast_Score=139, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=37.6, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=29.3172690763052, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17561402, Length=246, Percent_Identity=27.6422764227642, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=27.9352226720648, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17561272, Length=244, Percent_Identity=30.327868852459, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=266, Percent_Identity=27.4436090225564, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=27.9850746268657, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=31.3953488372093, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=247, Percent_Identity=28.3400809716599, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=272, Percent_Identity=30.1470588235294, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=26.9076305220884, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=27.4436090225564, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17536025, Length=260, Percent_Identity=28.0769230769231, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=27.8810408921933, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=265, Percent_Identity=27.1698113207547, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=29.3893129770992, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=269, Percent_Identity=28.2527881040892, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17568967, Length=104, Percent_Identity=34.6153846153846, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=269, Percent_Identity=26.7657992565056, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=267, Percent_Identity=26.5917602996255, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=278, Percent_Identity=29.8561151079137, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=196, Percent_Identity=28.0612244897959, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=28.9156626506024, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17565030, Length=275, Percent_Identity=29.4545454545455, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=265, Percent_Identity=26.4150943396226, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=194, Percent_Identity=28.3505154639175, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=24.7011952191235, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=257, Percent_Identity=28.7937743190661, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=29.3233082706767, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=271, Percent_Identity=28.4132841328413, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=196, Percent_Identity=27.0408163265306, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=26.2357414448669, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=191, Percent_Identity=26.7015706806283, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=202, Percent_Identity=32.6732673267327, Blast_Score=93, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6324126, Length=186, Percent_Identity=29.0322580645161, Blast_Score=81, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6320089, Length=191, Percent_Identity=28.2722513089005, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24639444, Length=240, Percent_Identity=35.4166666666667, Blast_Score=126, Evalue=1e-29,
Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=29.4354838709677, Blast_Score=111, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24644339, Length=252, Percent_Identity=30.952380952381, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI28571526, Length=254, Percent_Identity=31.1023622047244, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI23397609, Length=244, Percent_Identity=30.327868852459, Blast_Score=104, Evalue=4e-23,
Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=29.8039215686275, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24644337, Length=221, Percent_Identity=32.1266968325792, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI18859837, Length=243, Percent_Identity=30.8641975308642, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28571387, Length=218, Percent_Identity=29.8165137614679, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24641232, Length=218, Percent_Identity=28.8990825688073, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=25.5060728744939, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI116007236, Length=233, Percent_Identity=27.8969957081545, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI17737361, Length=249, Percent_Identity=28.1124497991968, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24581726, Length=141, Percent_Identity=29.0780141843972, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21356301, Length=260, Percent_Identity=25.7692307692308, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI116007238, Length=173, Percent_Identity=28.3236994219653, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007234, Length=203, Percent_Identity=31.0344827586207, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 25082; Mature: 24951

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNITSRSVLVTGGNRGIGLAVARRLLADGHKVAVTHRGSGVPDGLFGVKCDVTDTESVD
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCCHHHH
RAFAEVEAHQGPVEVLVANAGIVANTLLMRMSDEQFTSVIDANLTGAWRCAKRANRAMLR
HHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
AKFGRIIFLGSVVGLGGGPGQVNYAASKSGLIGMARSITREIGSRNITANVVAPGFIETD
HHHCCEEEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
MTRDEVTEEMREVVLKYGVPAGRPGQPEEVAAAISFLASDDASYINGAVIPVDGGMGMGH
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCC
>Mature Secondary Structure 
TNITSRSVLVTGGNRGIGLAVARRLLADGHKVAVTHRGSGVPDGLFGVKCDVTDTESVD
CCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCCHHHH
RAFAEVEAHQGPVEVLVANAGIVANTLLMRMSDEQFTSVIDANLTGAWRCAKRANRAMLR
HHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
AKFGRIIFLGSVVGLGGGPGQVNYAASKSGLIGMARSITREIGSRNITANVVAPGFIETD
HHHCCEEEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
MTRDEVTEEMREVVLKYGVPAGRPGQPEEVAAAISFLASDDASYINGAVIPVDGGMGMGH
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA