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The map label for this gene is hlyC

Identifier: 54020644

GI number: 54020644

Start: 835435

End: 836667

Strand: Reverse

Name: hlyC

Synonym: mhp663

Alternate gene names: 54020644

Gene position: 836667-835435 (Counterclockwise)

Preceding gene: 54020645

Following gene: 54020643

Centisome position: 93.72

GC content: 28.95

Gene sequence:

>1233_bases
ATGGCCTTATATTTTGCTATTTTATCCGTTGTTTTAGTGATTTTATTCTTTATTTCGGCAATTTTTTCTGCAAGCGAGAC
CGTATTTACTGCAACAAGTCGGGTAAAAGTTGATGAAAATATTGCTGATTCTTTCTGGGGAAAAAAGCAAATTTTACGCT
ATTATGATAATTATGAAAAAACTTTAACAATCATTTTAATTTGAAATAATATCGTAAATATCGGAATTTCGATTATAATT
TCGACTTTTTTTTCCAGTTTGCCGATTAATGAATCACTGCAGATTTTGATCTCAATTGCAGCAACAACCCCGCCTTTAAT
TATTTTTGGCGAAATTTATCCAAAGATTTTCGGTCGCAAAAAACCGATTTTATTTTTAAAATATTTTTGATTTTTTATCG
GTTTTTTCTATTATTTTTTATACCCACTTGCAACCTTGATGACAAAATTTGTCAAAAAAATAAATGTTACTAATACCGAA
AATGAGCTAAAAAAAATAATTTTGCAAGCCCAGCGCGAAGAAGTTCTTGAAAAAGAAGAATCAGATCTGGCGATCAGAGC
GCTTGATTTTGACTCTTTTAAAACCGCAAAACATTTTACAAAATTAAAAGATCTTGTCTATGTTAATTACGAAGATAGTC
TTGAATCAATAAAAAATGTGATAATTGATCACAATTTTTCGCGAATTCCAGTCTGAAAAGAGAATAATTTCATCGGAATT
CTACTTTCAAAAGATATTTTGTATCTTGATAAATTCGACATTAACGACCATATTGTCGAAACTCCTTTACTTTTGGCGAC
TAATTTGATTAAGACTAATTATGAAATTTTAAAAAAAGCAAAATCTCACCTTGGGTTTGTCATTGATAATGTAGAAAATA
AAAAAATAATTGGAATTCTTACTTTTGAGGATATTCTTGAATGTTTATTCGGGCCAATTTATGATGAATATGACTACCGT
GATGATCTAGATTTCTACCAAATCAATCCAAATCAGATAACAACTAAGGCTGAGACAAATATTGTAACGATTAACAAAGC
TTTAAAGGTTGACTTGCCCGTGAGTTTTAAAGATCTAAATCAATGACTTTTAGCCCAAAAACCCAAAAAAAAGCTGATTT
TAGGAGATAAAATTTATTTTAGGTCACCTTTATATAGTTTAGAATTCGAAATAATTAGTAAAAATGCCAACAACATTGAA
GTAAAAATAACCAAAAATGAAAACCAGGTATAA

Upstream 100 bases:

>100_bases
TATTTTTTGATTTTTTTCCTGAATTTGGCAAGTTTAGTCCTGCAATTCCGGAGTCTTCATATAATAAAAAACCAAATATT
AATTTAGGATTGGATGAATA

Downstream 100 bases:

>100_bases
AAAATTGGTTTTAGAATTTCAAGGTAAATTTTACACAATTTTTCTTGATTATTCACCCAAATTTTCTAAAATTATAATAA
AAATGGTTGATGATTTTATT

Product: hemolysin

Products: NA

Alternate protein names: VXpSPT7_orf424 [H]

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MALYFAILSVVLVILFFISAIFSASETVFTATSRVKVDENIADSFWGKKQILRYYDNYEKTLTIILIWNNIVNIGISIII
STFFSSLPINESLQILISIAATTPPLIIFGEIYPKIFGRKKPILFLKYFWFFIGFFYYFLYPLATLMTKFVKKINVTNTE
NELKKIILQAQREEVLEKEESDLAIRALDFDSFKTAKHFTKLKDLVYVNYEDSLESIKNVIIDHNFSRIPVWKENNFIGI
LLSKDILYLDKFDINDHIVETPLLLATNLIKTNYEILKKAKSHLGFVIDNVENKKIIGILTFEDILECLFGPIYDEYDYR
DDLDFYQINPNQITTKAETNIVTINKALKVDLPVSFKDLNQWLLAQKPKKKLILGDKIYFRSPLYSLEFEIISKNANNIE
VKITKNENQV

Sequences:

>Translated_410_residues
MALYFAILSVVLVILFFISAIFSASETVFTATSRVKVDENIADSFWGKKQILRYYDNYEKTLTIILI*NNIVNIGISIII
STFFSSLPINESLQILISIAATTPPLIIFGEIYPKIFGRKKPILFLKYF*FFIGFFYYFLYPLATLMTKFVKKINVTNTE
NELKKIILQAQREEVLEKEESDLAIRALDFDSFKTAKHFTKLKDLVYVNYEDSLESIKNVIIDHNFSRIPV*KENNFIGI
LLSKDILYLDKFDINDHIVETPLLLATNLIKTNYEILKKAKSHLGFVIDNVENKKIIGILTFEDILECLFGPIYDEYDYR
DDLDFYQINPNQITTKAETNIVTINKALKVDLPVSFKDLNQ*LLAQKPKKKLILGDKIYFRSPLYSLEFEIISKNANNIE
VKITKNENQV
>Mature_409_residues
ALYFAILSVVLVILFFISAIFSASETVFTATSRVKVDENIADSFWGKKQILRYYDNYEKTLTIILI*NNIVNIGISIIIS
TFFSSLPINESLQILISIAATTPPLIIFGEIYPKIFGRKKPILFLKYF*FFIGFFYYFLYPLATLMTKFVKKINVTNTEN
ELKKIILQAQREEVLEKEESDLAIRALDFDSFKTAKHFTKLKDLVYVNYEDSLESIKNVIIDHNFSRIPV*KENNFIGIL
LSKDILYLDKFDINDHIVETPLLLATNLIKTNYEILKKAKSHLGFVIDNVENKKIIGILTFEDILECLFGPIYDEYDYRD
DLDFYQINPNQITTKAETNIVTINKALKVDLPVSFKDLNQ*LLAQKPKKKLILGDKIYFRSPLYSLEFEIISKNANNIEV
KITKNENQV

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR002550 [H]

Pfam domain/function: PF00571 CBS; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46900; Mature: 46769

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALYFAILSVVLVILFFISAIFSASETVFTATSRVKVDENIADSFWGKKQILRYYDNYEK
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECEEEECCCHHHHHCCHHHHHHHHCCCCC
TLTIILINNIVNIGISIIISTFFSSLPINESLQILISIAATTPPLIIFGEIYPKIFGRKK
EEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEHHHHHHHHCCCC
PILFLKYFFFIGFFYYFLYPLATLMTKFVKKINVTNTENELKKIILQAQREEVLEKEESD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
LAIRALDFDSFKTAKHFTKLKDLVYVNYEDSLESIKNVIIDHNFSRIPVKENNFIGILLS
EEEEEECCCCHHHHHHHHHHHHEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEE
KDILYLDKFDINDHIVETPLLLATNLIKTNYEILKKAKSHLGFVIDNVENKKIIGILTFE
CCEEEEEECCCCCHHHHCHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCEEEEEEEHH
DILECLFGPIYDEYDYRDDLDFYQINPNQITTKAETNIVTINKALKVDLPVSFKDLNQLL
HHHHHHHCCCCCCCCCCCCCCEEEECCCEEEEECCCCEEEEECEEEEECCCCHHHHHHHH
AQKPKKKLILGDKIYFRSPLYSLEFEIISKNANNIEVKITKNENQV
HCCCCCCEEECCEEEECCCCCEEEEEEEECCCCEEEEEEECCCCCC
>Mature Secondary Structure 
ALYFAILSVVLVILFFISAIFSASETVFTATSRVKVDENIADSFWGKKQILRYYDNYEK
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECEEEECCCHHHHHCCHHHHHHHHCCCCC
TLTIILINNIVNIGISIIISTFFSSLPINESLQILISIAATTPPLIIFGEIYPKIFGRKK
EEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEHHHHHHHHCCCC
PILFLKYFFFIGFFYYFLYPLATLMTKFVKKINVTNTENELKKIILQAQREEVLEKEESD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
LAIRALDFDSFKTAKHFTKLKDLVYVNYEDSLESIKNVIIDHNFSRIPVKENNFIGILLS
EEEEEECCCCHHHHHHHHHHHHEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEE
KDILYLDKFDINDHIVETPLLLATNLIKTNYEILKKAKSHLGFVIDNVENKKIIGILTFE
CCEEEEEECCCCCHHHHCHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCEEEEEEEHH
DILECLFGPIYDEYDYRDDLDFYQINPNQITTKAETNIVTINKALKVDLPVSFKDLNQLL
HHHHHHHCCCCCCCCCCCCCCEEEECCCEEEEECCCCEEEEECEEEEECCCCHHHHHHHH
AQKPKKKLILGDKIYFRSPLYSLEFEIISKNANNIEVKITKNENQV
HCCCCCCEEECCEEEECCCCCEEEEEEEECCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7569993 [H]