Click here to switch to the map view.

The map label for this gene is potC

Identifier: 54020581

GI number: 54020581

Start: 704570

End: 705394

Strand: Reverse

Name: potC

Synonym: mhp557

Alternate gene names: 54020581

Gene position: 705394-704570 (Counterclockwise)

Preceding gene: 54020582

Following gene: 54020580

Centisome position: 79.01

GC content: 27.15

Gene sequence:

>825_bases
ATGACTAAAATTATTGATTTTTTCCAAAAACATGAAATTTTGAAAAAATCATACGTTTGATTTTTAATTATTCTTTTTTA
TATTCCGATTATTGTCGGGGCAGTTTTTTCTTTTAATTCACCTTCAAAAAAAGGATTTGTTTCAAATACTTTAAATAAAT
TTTCCTTGCATGCTTTTGATGAATTTAGCAAAGAAAGTTTTGCTAGCGCTTTTATTAATTCAGTAATTATTGCTTTTTTT
GCAGCAATTGTTGTTGTTTTTCTTTCACTTTTGACAGTTTTTGCTCTCTGGCGACAAAAAAATAAAACAATAAAAACCTA
TGTAGTTTTAAGCTCAAACATTCCGCTAATTAATCCAGATGTAATTACAGCAATTTCACTTGCAACAATTTTAAGTTTTT
TATTTGGTTCACTTTCGGCTGCCAGTGAAGGTTTATATCGGGCAATTATTTCACACATTGTAATGACTTTTCCTTATGGA
ATTCTCCTTTTATTTCCAAAAAGTGAAAAATTTTCCCTTAATTTATACGAAGCAGCCCAGGATTTAGGCTATTCTAAAAC
TAAAGCTTGATTTTTAATTTATCTAAAACATATGTTTCCAGCGATAATTTCGACTTTTTTTGTTGTTGTTTTTTTATCTT
TTGATGATTTTATTATTACAAAAATTACCTCAAATGCACAAACAGTCGGGACACTTTTATACCAAGGAACTTTTAAAACT
TGAGCATTGATGTTAGGAACTATTATGCTTTTTTTCCTATTTATTTCAAATTTTATCTGGATTTATTATAAAACTAAAAA
AGGTGGAAAATGAAAAACAAATTAG

Upstream 100 bases:

>100_bases
GTTTCATCGCTTGTTTTGGTGACCCTGCTAGTTTTTATTGGAATTTATAGTCTAATTCATTTTATTCCTATTATTATAAT
GAAAATTAAAGGATTTAAAT

Downstream 100 bases:

>100_bases
TCTATCTTTTTGGCAAATTCGCGGCTTTTATTTGTCTAATTATCCTTTTTTTTATAGCATTTTTTTTAAAATCACAGTTT
GGATTTAAACCCGTTATTTA

Product: spermidine/putrescine ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MTKIIDFFQKHEILKKSYVWFLIILFYIPIIVGAVFSFNSPSKKGFVSNTLNKFSLHAFDEFSKESFASAFINSVIIAFF
AAIVVVFLSLLTVFALWRQKNKTIKTYVVLSSNIPLINPDVITAISLATILSFLFGSLSAASEGLYRAIISHIVMTFPYG
ILLLFPKSEKFSLNLYEAAQDLGYSKTKAWFLIYLKHMFPAIISTFFVVVFLSFDDFIITKITSNAQTVGTLLYQGTFKT
WALMLGTIMLFFLFISNFIWIYYKTKKGGKWKTN

Sequences:

>Translated_274_residues
MTKIIDFFQKHEILKKSYV*FLIILFYIPIIVGAVFSFNSPSKKGFVSNTLNKFSLHAFDEFSKESFASAFINSVIIAFF
AAIVVVFLSLLTVFALWRQKNKTIKTYVVLSSNIPLINPDVITAISLATILSFLFGSLSAASEGLYRAIISHIVMTFPYG
ILLLFPKSEKFSLNLYEAAQDLGYSKTKA*FLIYLKHMFPAIISTFFVVVFLSFDDFIITKITSNAQTVGTLLYQGTFKT
*ALMLGTIMLFFLFISNFIWIYYKTKKGGK*KTN
>Mature_273_residues
TKIIDFFQKHEILKKSYV*FLIILFYIPIIVGAVFSFNSPSKKGFVSNTLNKFSLHAFDEFSKESFASAFINSVIIAFFA
AIVVVFLSLLTVFALWRQKNKTIKTYVVLSSNIPLINPDVITAISLATILSFLFGSLSAASEGLYRAIISHIVMTFPYGI
LLLFPKSEKFSLNLYEAAQDLGYSKTKA*FLIYLKHMFPAIISTFFVVVFLSFDDFIITKITSNAQTVGTLLYQGTFKT*
ALMLGTIMLFFLFISNFIWIYYKTKKGGK*KTN

Specific function: Required for the activity of the bacterial transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30454; Mature: 30322

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIIDFFQKHEILKKSYVFLIILFYIPIIVGAVFSFNSPSKKGFVSNTLNKFSLHAFDE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
FSKESFASAFINSVIIAFFAAIVVVFLSLLTVFALWRQKNKTIKTYVVLSSNIPLINPDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEECCHH
ITAISLATILSFLFGSLSAASEGLYRAIISHIVMTFPYGILLLFPKSEKFSLNLYEAAQD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEHHHHHHHH
LGYSKTKAFLIYLKHMFPAIISTFFVVVFLSFDDFIITKITSNAQTVGTLLYQGTFKTAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
MLGTIMLFFLFISNFIWIYYKTKKGGKKTN
HHHHHHHHHHHHHHHEEEEEEECCCCCCCC
>Mature Secondary Structure 
TKIIDFFQKHEILKKSYVFLIILFYIPIIVGAVFSFNSPSKKGFVSNTLNKFSLHAFDE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
FSKESFASAFINSVIIAFFAAIVVVFLSLLTVFALWRQKNKTIKTYVVLSSNIPLINPDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEECCHH
ITAISLATILSFLFGSLSAASEGLYRAIISHIVMTFPYGILLLFPKSEKFSLNLYEAAQD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEHHHHHHHH
LGYSKTKAFLIYLKHMFPAIISTFFVVVFLSFDDFIITKITSNAQTVGTLLYQGTFKTAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
MLGTIMLFFLFISNFIWIYYKTKKGGKKTN
HHHHHHHHHHHHHHHEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7569993 [H]