Click here to switch to the map view.

The map label for this gene is (hspc4-1 [H]

Identifier: 53723306

GI number: 53723306

Start: 3077355

End: 3077789

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: BPSS2288

Alternate gene names: 53723306

Gene position: 3077789-3077355 (Counterclockwise)

Preceding gene: 53723307

Following gene: 53723304

Centisome position: 97.0

GC content: 61.38

Gene sequence:

>435_bases
ATGAGCAATGTGACGCGTTACGACCCGTTTTCGCTGGAGCCTGTGTCCGATCTGTTCCAAGGTTTGTTCCGTCCGCTGCG
CGGCATCGCGGACGCCGACGACGAGAAGCTCGCGTCGATGAAGATCGACGTGACCGAAAACGACCAGGCCTACGCCGTCA
AGGCCGAGCTGCCGGGCGTCGACAAGAATGACATCAACGTGCAGATCGACGGCAATACCGTGTCGATTTCCGCGAAGGTC
GAGCGAAACAAGGAACTGAAGGAAGGCGAGCGCGTGATTCGGCGCGAGCGCTATTCGGGCGAGTTCGCGCGAACCTTCTC
GCTCGCGAACGAACTCGACCGCGACGCGGCGAGCGCGCAGTATCAGGACGGCGTGCTGTCGCTGACGCTGCCGAAGAAGG
CGAGCTCGGAGAAGAAGAAGCTGACGATCGGCTGA

Upstream 100 bases:

>100_bases
CCGGTCAGCATCATCGATCAACGGGCGTCCGGCATGCGCCGGGCGCCGTCCGTGGCGTCGGCCGCGCGGGGTGCGCGGCC
ACGACTTTCAGGAGAGAGCA

Downstream 100 bases:

>100_bases
GCATGCGCGCCGCGCCGAACGCGGCGCCGCGCGATGGCGGGCCGGCGCGCGGCCGCGCCGTCACGGATGCGCGGCCGGCT
TGCCGACGGTCTGCGCGAGG

Product: HSP20/alpha crystallin family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKV
ERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG

Sequences:

>Translated_144_residues
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKV
ERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG
>Mature_143_residues
SNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGVDKNDINVQIDGNTVSISAKVE
RNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQYQDGVLSLTLPKKASSEKKKLTIG

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 16026; Mature: 15895

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGV
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCC
DKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQ
CCCCEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
YQDGVLSLTLPKKASSEKKKLTIG
CCCCEEEEEECCCCCCCCCEECCC
>Mature Secondary Structure 
SNVTRYDPFSLEPVSDLFQGLFRPLRGIADADDEKLASMKIDVTENDQAYAVKAELPGV
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCC
DKNDINVQIDGNTVSISAKVERNKELKEGERVIRRERYSGEFARTFSLANELDRDAASAQ
CCCCEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
YQDGVLSLTLPKKASSEKKKLTIG
CCCCEEEEEECCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA