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The map label for this gene is ybdD [H]

Identifier: 53723189

GI number: 53723189

Start: 2938659

End: 2938865

Strand: Reverse

Name: ybdD [H]

Synonym: BPSS2172a

Alternate gene names: 53723189

Gene position: 2938865-2938659 (Counterclockwise)

Preceding gene: 53723190

Following gene: 53723183

Centisome position: 92.62

GC content: 65.7

Gene sequence:

>207_bases
ATGTTTTCCGATCTCGGCGGCGAATGGCGCACCGCGGGCCGTTATCTGGGGCAGGCGTTGCGGCTGATGGTCGGCCTGCC
CGACTACGACGGCTATGTCGCGCATATGCGCGCGACGCACCCCGATCGTCCGGTGATGACGTACGAGGAGTTTTTCCGCG
AACGGCAGAACGCGCGGTACGGTTCGGGCGCGGGGAAGTGCTGCTGA

Upstream 100 bases:

>100_bases
TGCGCGCGCGGCGCGCGGTGCAGCCCACGTCGCGCGAAACGCCGTACGAACCGATGCCGGTCGCGCAGGCGCTCGGCAGC
GGACGCTGAGGGAGGCCGCG

Downstream 100 bases:

>100_bases
GGCGGCGCTTTCGCGAGGGTCAAGGCGGGAGAACGAGCGTCACGGTGCGAGCCGTGGCGCTTTTTTCATGGCGCGAAGCG
GCGCGAAGCGGTGCCCGACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MFSDLGGEWRTAGRYLGQALRLMVGLPDYDGYVAHMRATHPDRPVMTYEEFFRERQNARYGSGAGKCC

Sequences:

>Translated_68_residues
MFSDLGGEWRTAGRYLGQALRLMVGLPDYDGYVAHMRATHPDRPVMTYEEFFRERQNARYGSGAGKCC
>Mature_68_residues
MFSDLGGEWRTAGRYLGQALRLMVGLPDYDGYVAHMRATHPDRPVMTYEEFFRERQNARYGSGAGKCC

Specific function: Unknown

COG id: COG2879

COG function: function code S; Uncharacterized small protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiX [H]

Homologues:

Organism=Escherichia coli, GI87081761, Length=69, Percent_Identity=62.3188405797101, Blast_Score=91, Evalue=2e-20,
Organism=Escherichia coli, GI1790813, Length=71, Percent_Identity=57.7464788732394, Blast_Score=90, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007423 [H]

Pfam domain/function: PF04328 DUF466 [H]

EC number: NA

Molecular weight: Translated: 7764; Mature: 7764

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSDLGGEWRTAGRYLGQALRLMVGLPDYDGYVAHMRATHPDRPVMTYEEFFRERQNARY
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCC
GSGAGKCC
CCCCCCCC
>Mature Secondary Structure
MFSDLGGEWRTAGRYLGQALRLMVGLPDYDGYVAHMRATHPDRPVMTYEEFFRERQNARY
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCC
GSGAGKCC
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]