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The map label for this gene is oprD [H]

Identifier: 53723152

GI number: 53723152

Start: 2892881

End: 2894323

Strand: Reverse

Name: oprD [H]

Synonym: BPSS2136

Alternate gene names: 53723152

Gene position: 2894323-2892881 (Counterclockwise)

Preceding gene: 53723153

Following gene: 53723148

Centisome position: 91.22

GC content: 66.18

Gene sequence:

>1443_bases
ATGAAGAGGGTCGCGCGGGCGGTCGTGCTCGCGTGGGGACTGCCGATGCTCGCCGGCGTATCGATTGCCGGCGCCGCGCG
CGCGGACGATGCGGCGCCCGCCGCGCCGGCTCAGGCGCCGTTAGCCGCGACGCTCGCGCAGCAGGCGACGACGCCGAACG
CGCTCGTCAATGCCGACGCCACGCAGGCGGTGCTGCCGCAGCCGCCGATGTCGAGCCAGGCGAAATCGAAGGGCTTCATT
GCCGACAGCCATTTCGACGTGCTGTTGCGCAATTACGCGGACGTGCTCGATGCGAAGGGCGGGCCGCATCGTCACGCGTG
GGTCCAGGGCGTGATGGCGAACTTCGAGTCCGGCTATACGGGCGGGCTGATCGGCTTCGGCGTGGACGCGTCGATCTACG
CGGCGCTGAAGCTCGACGGCGGCGCGGGCGGCGGCAACATGGTGCACGTCGCGAAGGGCGGCGGCGGCTCGAACCAGCTC
GCTTGGGCGTTCCCCGGCATCTATGACGTGAAGGCGCGCATCTCGAACACCGTGATCAAGTACGGCCTGCAGGCGGTCGA
CAATCCGTTCATGGAGCAGCACGACAACCGCGCGCTGCCGCCGACGTTCCTCGGCGCGACGATCGTGAGCAACGAATTCA
AGAACGTGATGCTCGAGGCGGGCAGCTTCACGAAGACCAACGCGCGCGGCCATACGACGCTCACGAACCTGACGACGCAA
TACGGCGGCACGCGCGTCGACCGCTTCACGTACGTCGGCGGCACGTGGGATTATTCGCAGACGGGCTCGGCGTCGTTCTA
CGCGGGCCAGGCCGACGATGTCTGGCGCCAGTACTACGGCTCGGTCAAGCAAAGCTACGGCTCGCCGCAGACGGTCAAGT
GGACGGGCTTCGGCAATTTCTATTCGACGCACGACACGGGCGACGCGCGCCAGGGCAAGATCGACAACAACGCGTACAGC
CTGTCGCTCGCCGCGCAGCACGGCCCGCACGAGCTGCTGCTCGGCTATCAGCAGGTGCTCGGCGACCAGTTCTTCGATTA
CCTGAACGAAACGAACGGCATCTTCCTCGTCGATTCGATGGACGTCGACTACAACGCGCCGCACGAGAAATCGCTGCAGC
TGCGCTACACGTTCTACGGCAAGGAGGCGGGCCTGCCCGGCTTCAAGGCGATGGTGTGGGGCGTGACAGGCTGGGGGGCG
GACGGCTCCGCGAGCGCGGCGCTCGATCCGACGCGCTCGAGCATCTACTGGAAGGACGGCGCGCCGGTGCAGGGCCGCCA
TCACGAGTTCGGCTTCATCCCGTCGTATACGATCCAGAGCGGCAAGCTCAAGGACACGAAGATCACGTTCATCGCGATGT
GGCACGTGGGTTCGGCGCACTACTCGGACAGTACCAACCAGGAATACCGGCTGGTCGTGAACGTGCCGGTGAAGGTGTTC
TAA

Upstream 100 bases:

>100_bases
GTCGCTACGGCGGCGCGTCGGGGTGTCGCCGGCCGCGAGGCGCGGCCGGCGAGTGGGTAGTCAACATAAAAAGAGAAGCG
CAATGACACAACATCGATCG

Downstream 100 bases:

>100_bases
GGAAGGCGAAGCGAAAGCGGGCGGGTGGCGATTCGGCTGCCGTCGCCCGGCGTCGGCGCCGTCGTCGTGTCGCCGTCGCG
TTGCCATGGCGGCGATGTGG

Product: hypothetical protein

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MKRVARAVVLAWGLPMLAGVSIAGAARADDAAPAAPAQAPLAATLAQQATTPNALVNADATQAVLPQPPMSSQAKSKGFI
ADSHFDVLLRNYADVLDAKGGPHRHAWVQGVMANFESGYTGGLIGFGVDASIYAALKLDGGAGGGNMVHVAKGGGGSNQL
AWAFPGIYDVKARISNTVIKYGLQAVDNPFMEQHDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTNARGHTTLTNLTTQ
YGGTRVDRFTYVGGTWDYSQTGSASFYAGQADDVWRQYYGSVKQSYGSPQTVKWTGFGNFYSTHDTGDARQGKIDNNAYS
LSLAAQHGPHELLLGYQQVLGDQFFDYLNETNGIFLVDSMDVDYNAPHEKSLQLRYTFYGKEAGLPGFKAMVWGVTGWGA
DGSASAALDPTRSSIYWKDGAPVQGRHHEFGFIPSYTIQSGKLKDTKITFIAMWHVGSAHYSDSTNQEYRLVVNVPVKVF

Sequences:

>Translated_480_residues
MKRVARAVVLAWGLPMLAGVSIAGAARADDAAPAAPAQAPLAATLAQQATTPNALVNADATQAVLPQPPMSSQAKSKGFI
ADSHFDVLLRNYADVLDAKGGPHRHAWVQGVMANFESGYTGGLIGFGVDASIYAALKLDGGAGGGNMVHVAKGGGGSNQL
AWAFPGIYDVKARISNTVIKYGLQAVDNPFMEQHDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTNARGHTTLTNLTTQ
YGGTRVDRFTYVGGTWDYSQTGSASFYAGQADDVWRQYYGSVKQSYGSPQTVKWTGFGNFYSTHDTGDARQGKIDNNAYS
LSLAAQHGPHELLLGYQQVLGDQFFDYLNETNGIFLVDSMDVDYNAPHEKSLQLRYTFYGKEAGLPGFKAMVWGVTGWGA
DGSASAALDPTRSSIYWKDGAPVQGRHHEFGFIPSYTIQSGKLKDTKITFIAMWHVGSAHYSDSTNQEYRLVVNVPVKVF
>Mature_480_residues
MKRVARAVVLAWGLPMLAGVSIAGAARADDAAPAAPAQAPLAATLAQQATTPNALVNADATQAVLPQPPMSSQAKSKGFI
ADSHFDVLLRNYADVLDAKGGPHRHAWVQGVMANFESGYTGGLIGFGVDASIYAALKLDGGAGGGNMVHVAKGGGGSNQL
AWAFPGIYDVKARISNTVIKYGLQAVDNPFMEQHDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTNARGHTTLTNLTTQ
YGGTRVDRFTYVGGTWDYSQTGSASFYAGQADDVWRQYYGSVKQSYGSPQTVKWTGFGNFYSTHDTGDARQGKIDNNAYS
LSLAAQHGPHELLLGYQQVLGDQFFDYLNETNGIFLVDSMDVDYNAPHEKSLQLRYTFYGKEAGLPGFKAMVWGVTGWGA
DGSASAALDPTRSSIYWKDGAPVQGRHHEFGFIPSYTIQSGKLKDTKITFIAMWHVGSAHYSDSTNQEYRLVVNVPVKVF

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 51613; Mature: 51613

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVARAVVLAWGLPMLAGVSIAGAARADDAAPAAPAQAPLAATLAQQATTPNALVNADA
CCHHHHHHHHHHCCHHHHCCEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCC
TQAVLPQPPMSSQAKSKGFIADSHFDVLLRNYADVLDAKGGPHRHAWVQGVMANFESGYT
CCCCCCCCCCCCCHHCCCCEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
GGLIGFGVDASIYAALKLDGGAGGGNMVHVAKGGGGSNQLAWAFPGIYDVKARISNTVIK
CCEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEECCCCEEHHHHHHHHHHH
YGLQAVDNPFMEQHDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTNARGHTTLTNLTTQ
HHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHEEECCCCEECCCCCCEEEEHHHHH
YGGTRVDRFTYVGGTWDYSQTGSASFYAGQADDVWRQYYGSVKQSYGSPQTVKWTGFGNF
CCCEEEEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
YSTHDTGDARQGKIDNNAYSLSLAAQHGPHELLLGYQQVLGDQFFDYLNETNGIFLVDSM
CCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
DVDYNAPHEKSLQLRYTFYGKEAGLPGFKAMVWGVTGWGADGSASAALDPTRSSIYWKDG
CCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECCC
APVQGRHHEFGFIPSYTIQSGKLKDTKITFIAMWHVGSAHYSDSTNQEYRLVVNVPVKVF
CCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEC
>Mature Secondary Structure
MKRVARAVVLAWGLPMLAGVSIAGAARADDAAPAAPAQAPLAATLAQQATTPNALVNADA
CCHHHHHHHHHHCCHHHHCCEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCC
TQAVLPQPPMSSQAKSKGFIADSHFDVLLRNYADVLDAKGGPHRHAWVQGVMANFESGYT
CCCCCCCCCCCCCHHCCCCEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC
GGLIGFGVDASIYAALKLDGGAGGGNMVHVAKGGGGSNQLAWAFPGIYDVKARISNTVIK
CCEEEECCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEECCCCEEHHHHHHHHHHH
YGLQAVDNPFMEQHDNRALPPTFLGATIVSNEFKNVMLEAGSFTKTNARGHTTLTNLTTQ
HHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHEEECCCCEECCCCCCEEEEHHHHH
YGGTRVDRFTYVGGTWDYSQTGSASFYAGQADDVWRQYYGSVKQSYGSPQTVKWTGFGNF
CCCEEEEEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC
YSTHDTGDARQGKIDNNAYSLSLAAQHGPHELLLGYQQVLGDQFFDYLNETNGIFLVDSM
CCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
DVDYNAPHEKSLQLRYTFYGKEAGLPGFKAMVWGVTGWGADGSASAALDPTRSSIYWKDG
CCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEECCC
APVQGRHHEFGFIPSYTIQSGKLKDTKITFIAMWHVGSAHYSDSTNQEYRLVVNVPVKVF
CCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]