| Definition | Burkholderia pseudomallei K96243 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_006351 |
| Length | 3,173,005 |
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The map label for this gene is 53723026
Identifier: 53723026
GI number: 53723026
Start: 2711792
End: 2712958
Strand: Reverse
Name: 53723026
Synonym: BPSS2007
Alternate gene names: NA
Gene position: 2712958-2711792 (Counterclockwise)
Preceding gene: 53723027
Following gene: 53723025
Centisome position: 85.5
GC content: 57.67
Gene sequence:
>1167_bases ATGTCGCTCTTCACCACTGCTTGTGCCAAAATTTTGCCTCGGAGGTTGCACTCCGTCATCCGCCGACGACGTTCGTGGAA CGTTCCCCTCGTAGCGACGTGTGTCGCGATGAGTACTTCGAGTTGTGTTCAGCATGCCGACGTCGTTGCCGAGGCGCAAC GCCTAAACGCACCTGTCAAGGCCGTTGCAGATCAGCGGGTGCCCGTTGATACACCTCATGGCGACGGGCTGCTGCCTGTC TATGCAAATCTTCCAATCGATAAGCCGGAACCCAGTGTGAAGCGGGTTTTCATCGTGATGCACGGTACGTTGAGGAATGC AGACGTGTACTTCGCATCTGGGCGCCAGATTGTCGAGCGAGCGGGTGATCTCGGGAAAGACGTGATGGTTGTTGCGCCGC AGTTCCTGACACAGTCCGACACTCGTGCGTTTTCTTTATCCGAAGAGACCCTGGCTTGGACGCAGGAGGGATGGAAGGGG GGTGAAGCAGCCCGCCAGCCCGGGCCAATAAGTTCGTTCGCTGCGCTCGATGCATTGCTCGCTCATTTCGCCAATCGCGC GCTCTACCCATCGCTATCGGCTGTGGTCATGATGGGGCATTCAGCCGGCGCACAGCTACTACAGCGTTATGCCGTGGCCG GGCGTGAAGGAGAGAAGCTTGCGCGTGATGGTATTTCCGTACGTTATATCGTTGCGAATCCGTCAAGCTATCTATATTTT GACGACGAGCGCCCGAACGGCGAGGTCACCGCCGGCGGTGCATGCCCGGCCGCGACGGAATGGAAATACGGTTTGAAATC GGCGCCGCCTTACGTCGTATCCCAGGATTTGCAGGACCTTGAATCGCGCTATGTGAGGCGTAGCGTCGTGTACCTGCTAG GAGAGGCGGATACCGATCCCTACACACATTTTATCGACCGCTCATGCGCGGCAATGGCGCAAGGCCCATATCGGCTCGCG CGGGGGCTCGCGTATTTCGATTATCTAAAGAAGAGACATCCGTCGGACCTTGCGCATAGGGTCGTTGAAGTACCTGGCGT CGGGCACGACAATCTGCGAATGTTCACGTCTGATTGCGGACTTGCAGTACTGTTCGATAAGGCAACGCCGCAGTCGTGTC CAATTTTCACGGCGTCGGCGCCAAGCGTTCGCGCGGAGCCTCGATAA
Upstream 100 bases:
>100_bases TTTTCCAAAGGCGGCACATGCTTTCGAATGTGCCGGAAATAGATCACACAATCGACTATTCGGTCCTAAACCGTCCTTAC CAATCAGGAGGCCCATCACC
Downstream 100 bases:
>100_bases GAGACGATTTCATGAACTCCAGCTTGCGCCACTGTCCGCTGATGGACTGCAATGCCTTGCCGAGGGGATTCGACGGCGCG ACGCATCGGCAGATGCTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 388; Mature: 387
Protein sequence:
>388_residues MSLFTTACAKILPRRLHSVIRRRRSWNVPLVATCVAMSTSSCVQHADVVAEAQRLNAPVKAVADQRVPVDTPHGDGLLPV YANLPIDKPEPSVKRVFIVMHGTLRNADVYFASGRQIVERAGDLGKDVMVVAPQFLTQSDTRAFSLSEETLAWTQEGWKG GEAARQPGPISSFAALDALLAHFANRALYPSLSAVVMMGHSAGAQLLQRYAVAGREGEKLARDGISVRYIVANPSSYLYF DDERPNGEVTAGGACPAATEWKYGLKSAPPYVVSQDLQDLESRYVRRSVVYLLGEADTDPYTHFIDRSCAAMAQGPYRLA RGLAYFDYLKKRHPSDLAHRVVEVPGVGHDNLRMFTSDCGLAVLFDKATPQSCPIFTASAPSVRAEPR
Sequences:
>Translated_388_residues MSLFTTACAKILPRRLHSVIRRRRSWNVPLVATCVAMSTSSCVQHADVVAEAQRLNAPVKAVADQRVPVDTPHGDGLLPV YANLPIDKPEPSVKRVFIVMHGTLRNADVYFASGRQIVERAGDLGKDVMVVAPQFLTQSDTRAFSLSEETLAWTQEGWKG GEAARQPGPISSFAALDALLAHFANRALYPSLSAVVMMGHSAGAQLLQRYAVAGREGEKLARDGISVRYIVANPSSYLYF DDERPNGEVTAGGACPAATEWKYGLKSAPPYVVSQDLQDLESRYVRRSVVYLLGEADTDPYTHFIDRSCAAMAQGPYRLA RGLAYFDYLKKRHPSDLAHRVVEVPGVGHDNLRMFTSDCGLAVLFDKATPQSCPIFTASAPSVRAEPR >Mature_387_residues SLFTTACAKILPRRLHSVIRRRRSWNVPLVATCVAMSTSSCVQHADVVAEAQRLNAPVKAVADQRVPVDTPHGDGLLPVY ANLPIDKPEPSVKRVFIVMHGTLRNADVYFASGRQIVERAGDLGKDVMVVAPQFLTQSDTRAFSLSEETLAWTQEGWKGG EAARQPGPISSFAALDALLAHFANRALYPSLSAVVMMGHSAGAQLLQRYAVAGREGEKLARDGISVRYIVANPSSYLYFD DERPNGEVTAGGACPAATEWKYGLKSAPPYVVSQDLQDLESRYVRRSVVYLLGEADTDPYTHFIDRSCAAMAQGPYRLAR GLAYFDYLKKRHPSDLAHRVVEVPGVGHDNLRMFTSDCGLAVLFDKATPQSCPIFTASAPSVRAEPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42392; Mature: 42260
Theoretical pI: Translated: 8.45; Mature: 8.45
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLFTTACAKILPRRLHSVIRRRRSWNVPLVATCVAMSTSSCVQHADVVAEAQRLNAPVK CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH AVADQRVPVDTPHGDGLLPVYANLPIDKPEPSVKRVFIVMHGTLRNADVYFASGRQIVER HHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCEEEEECCHHHHHH AGDLGKDVMVVAPQFLTQSDTRAFSLSEETLAWTQEGWKGGEAARQPGPISSFAALDALL HHCCCCCEEEECHHHHCCCCCCEEECCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH AHFANRALYPSLSAVVMMGHSAGAQLLQRYAVAGREGEKLARDGISVRYIVANPSSYLYF HHHHCCCCCCCHHHHEEECCHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEEECCCEEEEE DDERPNGEVTAGGACPAATEWKYGLKSAPPYVVSQDLQDLESRYVRRSVVYLLGEADTDP CCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCH YTHFIDRSCAAMAQGPYRLARGLAYFDYLKKRHPSDLAHRVVEVPGVGHDNLRMFTSDCG HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEECCCC LAVLFDKATPQSCPIFTASAPSVRAEPR EEEEEECCCCCCCCEEECCCCCCCCCCC >Mature Secondary Structure SLFTTACAKILPRRLHSVIRRRRSWNVPLVATCVAMSTSSCVQHADVVAEAQRLNAPVK CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH AVADQRVPVDTPHGDGLLPVYANLPIDKPEPSVKRVFIVMHGTLRNADVYFASGRQIVER HHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCEEEEECCHHHHHH AGDLGKDVMVVAPQFLTQSDTRAFSLSEETLAWTQEGWKGGEAARQPGPISSFAALDALL HHCCCCCEEEECHHHHCCCCCCEEECCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH AHFANRALYPSLSAVVMMGHSAGAQLLQRYAVAGREGEKLARDGISVRYIVANPSSYLYF HHHHCCCCCCCHHHHEEECCHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEEECCCEEEEE DDERPNGEVTAGGACPAATEWKYGLKSAPPYVVSQDLQDLESRYVRRSVVYLLGEADTDP CCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCH YTHFIDRSCAAMAQGPYRLARGLAYFDYLKKRHPSDLAHRVVEVPGVGHDNLRMFTSDCG HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCEEEECCCC LAVLFDKATPQSCPIFTASAPSVRAEPR EEEEEECCCCCCCCEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA