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The map label for this gene is arpC [H]

Identifier: 53722950

GI number: 53722950

Start: 2612032

End: 2613516

Strand: Reverse

Name: arpC [H]

Synonym: BPSS1929

Alternate gene names: 53722950

Gene position: 2613516-2612032 (Counterclockwise)

Preceding gene: 53722951

Following gene: 53722948

Centisome position: 82.37

GC content: 74.41

Gene sequence:

>1485_bases
ATGTGTACATCGCATCCGGCTAGCCGCCCGCGCGGGGGGCGGCCGCGCCTCGCCGCGATCGCGCTCGGCTGCGCGGCGTT
CGTTGCCGGTTGCGCGGTGGGGCCCGACTTCATCGCGCCCGCGCGGCCTGCCGTCGATGCGTACGTGCCGGACGGCGCCG
CGCGCACGCGTTTCGCCGCGAGCGACGCGACGCAGACGCTCGCGCCCGACGCGCCGTTTCCCGACGCATGGTGGCGGCTG
TTCGGCTCGCGCGAGATCGACGCAGCCGTTGACGACGCGTTCGCGGGCAGCCCGACGCTCGCGCGCGCGCGGGCGACGCT
CGCTCGCAGCGAGCACGCGCTGATCGCGGGCGCGGGCGTGTTCTATCCGCAGGCCGACGCGCAGGCGGGCGCGTCGCGGC
AGCGCTACGTGCCGTTGCGCACGGGCGCGAATCTGCCGGCATCGCTCTTCAATCTGTTCACGCTGTCGACGACGGTCAGC
TATGCGCTCGACCTGTGGGGCGGCGAGCGGCGCCATGTCGAAGGGCTCGCCGCGCAAGCCGACGCGCAGCGCCACGCGCT
CGCGGCCGCGCGCCTCACGCTTGCGGCGAACGTCGTCAACACGATGATCGCGCGCGCCGCGTATGCGGACGAGATCGCGC
TCACGCGCGAGCTGATCGCGCTGACCGACGAGCAGATCCGGCTGACGCGCGCGCAGGTGAGCGCCGGCACGAGCGCATAC
ACGGCCGTGCTCGCGCTCCAGGCGGCGCGCGCGTCGCTCGACGCGTCGCTGCCCGCGCTCGAGCAGAAGACCGGCGAGGC
CGACGATCTGCTCGCGACGCTCGCGGGCCGCTACCCGGCCGAGCACGTGCCGCCGCAAGTGTCGCTCGCCGCCATCGCAT
TGCCGGCGCGGCTGCCGCGGACGGTGCCGTCCGAGCTCGTGCGCCGCCGCCCCGACATCCTGCAGGCGGAGGCGGTGCTG
CATGCGGCGAGCGCGAACATCGGCGTGGCGAGCGCGGCGCTGTTTCCGAGCGTCACGCTATCGGCGTCGGGCGGCTTCGA
CGCGACGCGCGCGAGCGCGCTGTTCGGCCCGGCGGGCAGGGCATGGAGCGTCGGCGCATCGATCACCGCGCCGCTCTTTC
ATGGCGGCGCGCTCTGGTATCAGCGCAAGGCCGCGGTCGACGCGTTCGACGAATCGAACGCCGCGTATCGGCAAACGGTG
CTGAGCGCGTTCGCGCAGGTCGCCGATACGTTGAGGGCGCTCGATCACGACGCGACGGCGCTCGACGCGCAAGCGCGCGC
GATGAGCGCGGCGCGCGATGCGCGGCGGCTCGCGACGGTCCAGTACGAGGCGGGCACGGCCGGCTATCTGCAGGTGCTGC
TCGCCGATCAGCAATATCGGCAGGCGCGGCTCGCGTGGGTGCAGGCGAGCGCGCAGCGGCTGCAGGACACGGTCGCGCTG
TACGCGGCGCTCGGCGGCGGGTGGGGCGGCGCGCGGCAACCCTGA

Upstream 100 bases:

>100_bases
TCCGACCAGCGGGCCGAGCGCGTCGACGTGCGCGTGCTGCCCGTGATCTTTCGCGTCGTGCCGCGCAAGGATTTGCGGCT
GTTCCCCGGGCAGATCGTCG

Downstream 100 bases:

>100_bases
CGCTGCCCGGCGCGGGCGGCCGCCGCGCCGGCGCTCAGCGCCGCGCCGCTTCCTCGCGTGCCGCGTCGCTCTTCGAGAGC
AAACGTCGCAGCACGGCCGG

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MCTSHPASRPRGGRPRLAAIALGCAAFVAGCAVGPDFIAPARPAVDAYVPDGAARTRFAASDATQTLAPDAPFPDAWWRL
FGSREIDAAVDDAFAGSPTLARARATLARSEHALIAGAGVFYPQADAQAGASRQRYVPLRTGANLPASLFNLFTLSTTVS
YALDLWGGERRHVEGLAAQADAQRHALAAARLTLAANVVNTMIARAAYADEIALTRELIALTDEQIRLTRAQVSAGTSAY
TAVLALQAARASLDASLPALEQKTGEADDLLATLAGRYPAEHVPPQVSLAAIALPARLPRTVPSELVRRRPDILQAEAVL
HAASANIGVASAALFPSVTLSASGGFDATRASALFGPAGRAWSVGASITAPLFHGGALWYQRKAAVDAFDESNAAYRQTV
LSAFAQVADTLRALDHDATALDAQARAMSAARDARRLATVQYEAGTAGYLQVLLADQQYRQARLAWVQASAQRLQDTVAL
YAALGGGWGGARQP

Sequences:

>Translated_494_residues
MCTSHPASRPRGGRPRLAAIALGCAAFVAGCAVGPDFIAPARPAVDAYVPDGAARTRFAASDATQTLAPDAPFPDAWWRL
FGSREIDAAVDDAFAGSPTLARARATLARSEHALIAGAGVFYPQADAQAGASRQRYVPLRTGANLPASLFNLFTLSTTVS
YALDLWGGERRHVEGLAAQADAQRHALAAARLTLAANVVNTMIARAAYADEIALTRELIALTDEQIRLTRAQVSAGTSAY
TAVLALQAARASLDASLPALEQKTGEADDLLATLAGRYPAEHVPPQVSLAAIALPARLPRTVPSELVRRRPDILQAEAVL
HAASANIGVASAALFPSVTLSASGGFDATRASALFGPAGRAWSVGASITAPLFHGGALWYQRKAAVDAFDESNAAYRQTV
LSAFAQVADTLRALDHDATALDAQARAMSAARDARRLATVQYEAGTAGYLQVLLADQQYRQARLAWVQASAQRLQDTVAL
YAALGGGWGGARQP
>Mature_494_residues
MCTSHPASRPRGGRPRLAAIALGCAAFVAGCAVGPDFIAPARPAVDAYVPDGAARTRFAASDATQTLAPDAPFPDAWWRL
FGSREIDAAVDDAFAGSPTLARARATLARSEHALIAGAGVFYPQADAQAGASRQRYVPLRTGANLPASLFNLFTLSTTVS
YALDLWGGERRHVEGLAAQADAQRHALAAARLTLAANVVNTMIARAAYADEIALTRELIALTDEQIRLTRAQVSAGTSAY
TAVLALQAARASLDASLPALEQKTGEADDLLATLAGRYPAEHVPPQVSLAAIALPARLPRTVPSELVRRRPDILQAEAVL
HAASANIGVASAALFPSVTLSASGGFDATRASALFGPAGRAWSVGASITAPLFHGGALWYQRKAAVDAFDESNAAYRQTV
LSAFAQVADTLRALDHDATALDAQARAMSAARDARRLATVQYEAGTAGYLQVLLADQQYRQARLAWVQASAQRLQDTVAL
YAALGGGWGGARQP

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=478, Percent_Identity=26.3598326359833, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI2367348, Length=429, Percent_Identity=25.1748251748252, Blast_Score=88, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 51638; Mature: 51638

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCTSHPASRPRGGRPRLAAIALGCAAFVAGCAVGPDFIAPARPAVDAYVPDGAARTRFAA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCEECC
SDATQTLAPDAPFPDAWWRLFGSREIDAAVDDAFAGSPTLARARATLARSEHALIAGAGV
CCCHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCC
FYPQADAQAGASRQRYVPLRTGANLPASLFNLFTLSTTVSYALDLWGGERRHVEGLAAQA
CCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
DAQRHALAAARLTLAANVVNTMIARAAYADEIALTRELIALTDEQIRLTRAQVSAGTSAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHH
TAVLALQAARASLDASLPALEQKTGEADDLLATLAGRYPAEHVPPQVSLAAIALPARLPR
HHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHEEHHHHCCC
TVPSELVRRRPDILQAEAVLHAASANIGVASAALFPSVTLSASGGFDATRASALFGPAGR
CCHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCC
AWSVGASITAPLFHGGALWYQRKAAVDAFDESNAAYRQTVLSAFAQVADTLRALDHDATA
CEECCCCCCHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
LDAQARAMSAARDARRLATVQYEAGTAGYLQVLLADQQYRQARLAWVQASAQRLQDTVAL
HHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YAALGGGWGGARQP
HHHHCCCCCCCCCC
>Mature Secondary Structure
MCTSHPASRPRGGRPRLAAIALGCAAFVAGCAVGPDFIAPARPAVDAYVPDGAARTRFAA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCEECC
SDATQTLAPDAPFPDAWWRLFGSREIDAAVDDAFAGSPTLARARATLARSEHALIAGAGV
CCCHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCC
FYPQADAQAGASRQRYVPLRTGANLPASLFNLFTLSTTVSYALDLWGGERRHVEGLAAQA
CCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
DAQRHALAAARLTLAANVVNTMIARAAYADEIALTRELIALTDEQIRLTRAQVSAGTSAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHH
TAVLALQAARASLDASLPALEQKTGEADDLLATLAGRYPAEHVPPQVSLAAIALPARLPR
HHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCHHHEEHHHHCCC
TVPSELVRRRPDILQAEAVLHAASANIGVASAALFPSVTLSASGGFDATRASALFGPAGR
CCHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCC
AWSVGASITAPLFHGGALWYQRKAAVDAFDESNAAYRQTVLSAFAQVADTLRALDHDATA
CEECCCCCCHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
LDAQARAMSAARDARRLATVQYEAGTAGYLQVLLADQQYRQARLAWVQASAQRLQDTVAL
HHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YAALGGGWGGARQP
HHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]