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The map label for this gene is yafC [H]

Identifier: 53722921

GI number: 53722921

Start: 2577069

End: 2578016

Strand: Reverse

Name: yafC [H]

Synonym: BPSS1900

Alternate gene names: 53722921

Gene position: 2578016-2577069 (Counterclockwise)

Preceding gene: 53722923

Following gene: 53722919

Centisome position: 81.25

GC content: 72.15

Gene sequence:

>948_bases
ATGGGCTCGGAAATCGGTTGGGAGCTGTACCGTTCGTTCCTCGGCGTGCTGCGCGAGGGTTCGCTATCGGGCGCGGCCCG
CGCGCTCGGCCTCACGCAGCCGACCGTCGGCCGGCACGTCGCGGCGCTCGAGGCGGCGCTTCGCGTGCCGCTTTTCACCC
GCTCGTCGAGCGGGTTGATGCCGACCGACGTGGCGCTCGCGTTGCGCGCGCACGCCGAGGCGATGGAAAGCACGGCCGAT
GCGCTCGCGCGCGCGGCGACGAGCTTCGGCGAGGACGTGCGCGGCGTCGTGCGGATCTCGGCGAGCGACGTGGTGGGCGT
CGAGGTGCTGCCGCCGATCGTCGCGCGCCTTCGGCAGCGGCATCCGGCGCTGACGGTCGAGCTCGCATTGACGAACCGCG
TGCAGGATCTGCTGCGCCGCGAAGCCGATATCGCGGTGCGAATGACGCGTCCCGGGCAGACGCAACTGATCGCGCGGCAC
ATCGGCGGCATCGAGCTCGGCCTGCATGCGCATCGCGACTATCTCGCGCGGTGCGGCACGCCGCGCGATGCGGGCGAACT
GGTTCGCCATGCGCTGATCGGCCATGACCGTCCGACGGCGTTCATCCGGCAGATCGCGAAGTCGTTCCCGGGCTTCGATC
GCGGCGCGTTCGCGTTGCGCACCGACAGCGATCTCGCGCAACTCGCGCTGATCCGCTGCGGCGCGGGCATCGGCGCTTGC
CAGGCGGCGCTCGCGAAGCGCGATCCCGCGCTCGTGCGGGTGCTGCCGAAGGCGTTTGCCGGCCGGCTCGATATGTGGGT
CACGATGCACGAGGACCTGCGCGGGAGCCCGCGCTGCCGGGCGGCGTTCGATGCGCTGGCCGAAGGGCTCGACGCGTATG
TCGACGAGCAGCGCGCGCCGGCTATCGCTCGTCGCCGCCGCCCGCTTCCCGGTACGCGCTCGGCGTGA

Upstream 100 bases:

>100_bases
CGCCATCGCCTGCTCCCGAACGTGATCGACCGGCGCATTCTGCACCGCGCGCCGCTCGATTAAAATTGCCGAAATTCGTT
TGGTGGCTATACATTTTCGT

Downstream 100 bases:

>100_bases
GCCCCGTCCACTTGCGGAACGCGCGCGTGAAATTCGCCGGATCGTTGAACTGCAGCCGCGCCGCGATCGTCTTCAGATCG
AGATCCGACGCGCGCAGCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MGSEIGWELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVALALRAHAEAMESTAD
ALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHPALTVELALTNRVQDLLRREADIAVRMTRPGQTQLIARH
IGGIELGLHAHRDYLARCGTPRDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAFALRTDSDLAQLALIRCGAGIGAC
QAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRAAFDALAEGLDAYVDEQRAPAIARRRRPLPGTRSA

Sequences:

>Translated_315_residues
MGSEIGWELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVALALRAHAEAMESTAD
ALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHPALTVELALTNRVQDLLRREADIAVRMTRPGQTQLIARH
IGGIELGLHAHRDYLARCGTPRDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAFALRTDSDLAQLALIRCGAGIGAC
QAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRAAFDALAEGLDAYVDEQRAPAIARRRRPLPGTRSA
>Mature_314_residues
GSEIGWELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLMPTDVALALRAHAEAMESTADA
LARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQRHPALTVELALTNRVQDLLRREADIAVRMTRPGQTQLIARHI
GGIELGLHAHRDYLARCGTPRDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAFALRTDSDLAQLALIRCGAGIGACQ
AALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRAAFDALAEGLDAYVDEQRAPAIARRRRPLPGTRSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=27.6223776223776, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787128, Length=232, Percent_Identity=25.4310344827586, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789639, Length=195, Percent_Identity=24.6153846153846, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787601, Length=162, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789440, Length=281, Percent_Identity=25.2669039145907, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI157672245, Length=137, Percent_Identity=30.6569343065693, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33942; Mature: 33810

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSEIGWELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLM
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCEEECCCCCCC
PTDVALALRAHAEAMESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHC
HPALTVELALTNRVQDLLRREADIAVRMTRPGQTQLIARHIGGIELGLHAHRDYLARCGT
CCCEEEEHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCEEECHHHHHHHHHHCCC
PRDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAFALRTDSDLAQLALIRCGAGIGAC
CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHCCCHHHH
QAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRAAFDALAEGLDAYVDEQRAP
HHHHHHCCHHHHHHHHHHHHCHHHHEEEECHHCCCCCHHHHHHHHHHHHHHHHHHHHCCH
AIARRRRPLPGTRSA
HHHHHCCCCCCCCCC
>Mature Secondary Structure 
GSEIGWELYRSFLGVLREGSLSGAARALGLTQPTVGRHVAALEAALRVPLFTRSSSGLM
CCCHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCEEECCCCCCC
PTDVALALRAHAEAMESTADALARAATSFGEDVRGVVRISASDVVGVEVLPPIVARLRQR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHC
HPALTVELALTNRVQDLLRREADIAVRMTRPGQTQLIARHIGGIELGLHAHRDYLARCGT
CCCEEEEHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCEEECHHHHHHHHHHCCC
PRDAGELVRHALIGHDRPTAFIRQIAKSFPGFDRGAFALRTDSDLAQLALIRCGAGIGAC
CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHCCCHHHH
QAALAKRDPALVRVLPKAFAGRLDMWVTMHEDLRGSPRCRAAFDALAEGLDAYVDEQRAP
HHHHHHCCHHHHHHHHHHHHCHHHHEEEECHHCCCCCHHHHHHHHHHHHHHHHHHHHCCH
AIARRRRPLPGTRSA
HHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]