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The map label for this gene is yngJ [H]

Identifier: 53722471

GI number: 53722471

Start: 1973410

End: 1974591

Strand: Reverse

Name: yngJ [H]

Synonym: BPSS1448

Alternate gene names: 53722471

Gene position: 1974591-1973410 (Counterclockwise)

Preceding gene: 53722479

Following gene: 53722470

Centisome position: 62.23

GC content: 67.09

Gene sequence:

>1182_bases
ATGAGCAACCTGCCCGGCGTGAACTTCATGCTCGGTGAAGACATCGAGATGCTGCGCGATTCGATCGCGCATTTCGCCGC
GAAGGAAATCGCGCCGCGCGCGGCCGAGATCGACCGTACCGACCAGTTCCCGATGGACCTCTGGCGCAAGTTCGGCGAGC
TGGGCGTGCTCGGGATGACGGTGGCCGAGGAGTACGGCGGCGCGAATCTCGGCTACACCGCGCACATGGTCGCGATGGAG
GAGATCTCGCGCGCGTCGGCGTCGGTCGGGCTGTCGTACGGCGCGCATTCGAACCTGTGCGTGAACCAGATCCACCGCAA
CGGCACCGATGCCCAGAAGCGCAGGTATCTGCCGAAGCTGATTTCCGGCGAGCACATCGGCGCGCTCGCGATGAGCGAGC
CGAACGCGGGCTCCGACGTCGTCGGCATGAAGCTGCGCGCCGAGCCGCGCGGCGCGCGCTACGTGCTCAACGGCACGAAG
ATGTGGATCACGAACGGCCCGGATTGCGACACGCTCGTCGTCTACGCGAAGACCGAGCCCGAGGCCGGCGCGCGCGGGAT
CACCGCGTTCATCGTCGAGAAGGGGATGAAGGGCTTCTCGGTCGCGCAAAAGCTCGACAAGCTCGGCATGCGCGGCTCGC
ATACGGGCGAGCTGGTGTTCGAGGACGTCGAGGTGCCCGAGGAGAACATCCTCGGCGAGCTGAACGGCGGCGTGAAGGTG
CTGATGAGCGGGCTCGACTACGAGCGCGCGGTGCTCGCGGGCGGCCCGACGGGCATCATGGCCGCGTGTCTCGACGCGGT
CGTGCCGTACGTTCACGATCGCAAGCAGTTCGGCCAGCCGATCGGCGAATTCCAACTGATCCAGGGCAAGATCGCCGACA
TGTACACGACGTTCCAGGCGTGCCGCGCCTACCTTTACGCGGTGGGCCGGCATCTCGACGCGGGCGGCAGCGCCCACCCG
CGCCAGGTGCGCAAGGACTGCGCGGGGGTGATCCTCTACACCGCGGAGAAGGCGACGTGGATGGCGGGCGAGGCGATCCA
GATTCTCGGCGGCAACGGCTACATCAACGAGTATCCGGTCGGCCGTCTCTGGCGTGACGCGAAGCTCTACGAGATCGGCG
CCGGCACGAGCGAGATCCGCCGGATGCTGATCGGCCGCGAGCTGTTCGCGGAAACGGCCTGA

Upstream 100 bases:

>100_bases
GAAAATTTCCGCAGCATATGGCAATGAACCGGCGGACGCACGGAGTTGAGCAAGACTCAATAATCGGCGCGTTCAAGGAC
TTCCTGGAGACGGAGGAGAC

Downstream 100 bases:

>100_bases
CCTCGCGCGCGGAGCCCACGCGATGCCGATCATCGAATCCAAGCTGAACCCGCGTTCCGACGAATTCCGCGCGAACGCCG
CGGCGCTCGAGGCGCTCGTT

Product: acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MSNLPGVNFMLGEDIEMLRDSIAHFAAKEIAPRAAEIDRTDQFPMDLWRKFGELGVLGMTVAEEYGGANLGYTAHMVAME
EISRASASVGLSYGAHSNLCVNQIHRNGTDAQKRRYLPKLISGEHIGALAMSEPNAGSDVVGMKLRAEPRGARYVLNGTK
MWITNGPDCDTLVVYAKTEPEAGARGITAFIVEKGMKGFSVAQKLDKLGMRGSHTGELVFEDVEVPEENILGELNGGVKV
LMSGLDYERAVLAGGPTGIMAACLDAVVPYVHDRKQFGQPIGEFQLIQGKIADMYTTFQACRAYLYAVGRHLDAGGSAHP
RQVRKDCAGVILYTAEKATWMAGEAIQILGGNGYINEYPVGRLWRDAKLYEIGAGTSEIRRMLIGRELFAETA

Sequences:

>Translated_393_residues
MSNLPGVNFMLGEDIEMLRDSIAHFAAKEIAPRAAEIDRTDQFPMDLWRKFGELGVLGMTVAEEYGGANLGYTAHMVAME
EISRASASVGLSYGAHSNLCVNQIHRNGTDAQKRRYLPKLISGEHIGALAMSEPNAGSDVVGMKLRAEPRGARYVLNGTK
MWITNGPDCDTLVVYAKTEPEAGARGITAFIVEKGMKGFSVAQKLDKLGMRGSHTGELVFEDVEVPEENILGELNGGVKV
LMSGLDYERAVLAGGPTGIMAACLDAVVPYVHDRKQFGQPIGEFQLIQGKIADMYTTFQACRAYLYAVGRHLDAGGSAHP
RQVRKDCAGVILYTAEKATWMAGEAIQILGGNGYINEYPVGRLWRDAKLYEIGAGTSEIRRMLIGRELFAETA
>Mature_392_residues
SNLPGVNFMLGEDIEMLRDSIAHFAAKEIAPRAAEIDRTDQFPMDLWRKFGELGVLGMTVAEEYGGANLGYTAHMVAMEE
ISRASASVGLSYGAHSNLCVNQIHRNGTDAQKRRYLPKLISGEHIGALAMSEPNAGSDVVGMKLRAEPRGARYVLNGTKM
WITNGPDCDTLVVYAKTEPEAGARGITAFIVEKGMKGFSVAQKLDKLGMRGSHTGELVFEDVEVPEENILGELNGGVKVL
MSGLDYERAVLAGGPTGIMAACLDAVVPYVHDRKQFGQPIGEFQLIQGKIADMYTTFQACRAYLYAVGRHLDAGGSAHPR
QVRKDCAGVILYTAEKATWMAGEAIQILGGNGYINEYPVGRLWRDAKLYEIGAGTSEIRRMLIGRELFAETA

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=385, Percent_Identity=62.5974025974026, Blast_Score=492, Evalue=1e-139,
Organism=Homo sapiens, GI226958414, Length=380, Percent_Identity=61.5789473684211, Blast_Score=466, Evalue=1e-131,
Organism=Homo sapiens, GI4557233, Length=379, Percent_Identity=40.1055408970976, Blast_Score=270, Evalue=2e-72,
Organism=Homo sapiens, GI4501859, Length=375, Percent_Identity=33.8666666666667, Blast_Score=238, Evalue=6e-63,
Organism=Homo sapiens, GI187960098, Length=386, Percent_Identity=36.2694300518135, Blast_Score=229, Evalue=3e-60,
Organism=Homo sapiens, GI4557231, Length=386, Percent_Identity=36.2694300518135, Blast_Score=229, Evalue=4e-60,
Organism=Homo sapiens, GI21361497, Length=381, Percent_Identity=37.2703412073491, Blast_Score=224, Evalue=9e-59,
Organism=Homo sapiens, GI4501857, Length=388, Percent_Identity=32.7319587628866, Blast_Score=223, Evalue=3e-58,
Organism=Homo sapiens, GI4557235, Length=344, Percent_Identity=36.3372093023256, Blast_Score=213, Evalue=3e-55,
Organism=Homo sapiens, GI76496475, Length=344, Percent_Identity=36.3372093023256, Blast_Score=212, Evalue=4e-55,
Organism=Homo sapiens, GI4503943, Length=387, Percent_Identity=33.8501291989664, Blast_Score=192, Evalue=5e-49,
Organism=Homo sapiens, GI7656849, Length=385, Percent_Identity=30.3896103896104, Blast_Score=192, Evalue=5e-49,
Organism=Homo sapiens, GI7669494, Length=361, Percent_Identity=34.9030470914127, Blast_Score=186, Evalue=3e-47,
Organism=Homo sapiens, GI48976061, Length=288, Percent_Identity=27.0833333333333, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI211971008, Length=288, Percent_Identity=27.0833333333333, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI38505218, Length=286, Percent_Identity=22.7272727272727, Blast_Score=74, Evalue=3e-13,
Organism=Escherichia coli, GI87081958, Length=388, Percent_Identity=29.1237113402062, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI1786223, Length=386, Percent_Identity=27.4611398963731, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI87081702, Length=269, Percent_Identity=27.1375464684015, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87082384, Length=264, Percent_Identity=26.1363636363636, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538396, Length=385, Percent_Identity=60.5194805194805, Blast_Score=474, Evalue=1e-134,
Organism=Caenorhabditis elegans, GI17570075, Length=393, Percent_Identity=33.8422391857506, Blast_Score=232, Evalue=2e-61,
Organism=Caenorhabditis elegans, GI17534899, Length=390, Percent_Identity=34.6153846153846, Blast_Score=229, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI17569725, Length=392, Percent_Identity=33.6734693877551, Blast_Score=228, Evalue=5e-60,
Organism=Caenorhabditis elegans, GI17506239, Length=382, Percent_Identity=33.2460732984293, Blast_Score=226, Evalue=1e-59,
Organism=Caenorhabditis elegans, GI17508101, Length=384, Percent_Identity=31.25, Blast_Score=211, Evalue=4e-55,
Organism=Caenorhabditis elegans, GI17533517, Length=388, Percent_Identity=31.1855670103093, Blast_Score=202, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI71990804, Length=274, Percent_Identity=38.6861313868613, Blast_Score=199, Evalue=2e-51,
Organism=Caenorhabditis elegans, GI71985184, Length=354, Percent_Identity=33.0508474576271, Blast_Score=196, Evalue=1e-50,
Organism=Caenorhabditis elegans, GI17534353, Length=382, Percent_Identity=31.6753926701571, Blast_Score=185, Evalue=4e-47,
Organism=Caenorhabditis elegans, GI32563615, Length=231, Percent_Identity=37.6623376623377, Blast_Score=172, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI71985192, Length=285, Percent_Identity=34.7368421052632, Blast_Score=172, Evalue=4e-43,
Organism=Caenorhabditis elegans, GI71982178, Length=274, Percent_Identity=31.7518248175182, Blast_Score=166, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI17551932, Length=381, Percent_Identity=28.3464566929134, Blast_Score=164, Evalue=6e-41,
Organism=Caenorhabditis elegans, GI17505929, Length=373, Percent_Identity=29.7587131367292, Blast_Score=164, Evalue=8e-41,
Organism=Caenorhabditis elegans, GI17531909, Length=244, Percent_Identity=28.2786885245902, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21355753, Length=387, Percent_Identity=63.3074935400517, Blast_Score=476, Evalue=1e-135,
Organism=Drosophila melanogaster, GI21356377, Length=383, Percent_Identity=40.9921671018277, Blast_Score=283, Evalue=1e-76,
Organism=Drosophila melanogaster, GI24646207, Length=381, Percent_Identity=38.0577427821522, Blast_Score=262, Evalue=3e-70,
Organism=Drosophila melanogaster, GI24660351, Length=387, Percent_Identity=34.8837209302326, Blast_Score=233, Evalue=2e-61,
Organism=Drosophila melanogaster, GI24666513, Length=385, Percent_Identity=33.7662337662338, Blast_Score=228, Evalue=5e-60,
Organism=Drosophila melanogaster, GI281363737, Length=357, Percent_Identity=33.8935574229692, Blast_Score=201, Evalue=6e-52,
Organism=Drosophila melanogaster, GI19920834, Length=389, Percent_Identity=32.3907455012853, Blast_Score=177, Evalue=9e-45,
Organism=Drosophila melanogaster, GI24652780, Length=309, Percent_Identity=24.2718446601942, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 42683; Mature: 42552

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS00072 ACYL_COA_DH_1 ; PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNLPGVNFMLGEDIEMLRDSIAHFAAKEIAPRAAEIDRTDQFPMDLWRKFGELGVLGMT
CCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHCCCEEHHH
VAEEYGGANLGYTAHMVAMEEISRASASVGLSYGAHSNLCVNQIHRNGTDAQKRRYLPKL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
ISGEHIGALAMSEPNAGSDVVGMKLRAEPRGARYVLNGTKMWITNGPDCDTLVVYAKTEP
HCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECEEEEEECCCCCCEEEEEEECCC
EAGARGITAFIVEKGMKGFSVAQKLDKLGMRGSHTGELVFEDVEVPEENILGELNGGVKV
CCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHCCCCHHH
LMSGLDYERAVLAGGPTGIMAACLDAVVPYVHDRKQFGQPIGEFQLIQGKIADMYTTFQA
HHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHH
CRAYLYAVGRHLDAGGSAHPRQVRKDCAGVILYTAEKATWMAGEAIQILGGNGYINEYPV
HHHHHHHHHHHCCCCCCCCHHHHHHHHCCEEEEECCCCEEECCCEEEEECCCCCCCCCCC
GRLWRDAKLYEIGAGTSEIRRMLIGRELFAETA
CHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNLPGVNFMLGEDIEMLRDSIAHFAAKEIAPRAAEIDRTDQFPMDLWRKFGELGVLGMT
CCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHCCCEEHHH
VAEEYGGANLGYTAHMVAMEEISRASASVGLSYGAHSNLCVNQIHRNGTDAQKRRYLPKL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
ISGEHIGALAMSEPNAGSDVVGMKLRAEPRGARYVLNGTKMWITNGPDCDTLVVYAKTEP
HCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECEEEEEECCCCCCEEEEEEECCC
EAGARGITAFIVEKGMKGFSVAQKLDKLGMRGSHTGELVFEDVEVPEENILGELNGGVKV
CCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHCCCCHHH
LMSGLDYERAVLAGGPTGIMAACLDAVVPYVHDRKQFGQPIGEFQLIQGKIADMYTTFQA
HHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHH
CRAYLYAVGRHLDAGGSAHPRQVRKDCAGVILYTAEKATWMAGEAIQILGGNGYINEYPV
HHHHHHHHHHHCCCCCCCCHHHHHHHHCCEEEEECCCCEEECCCEEEEECCCCCCCCCCC
GRLWRDAKLYEIGAGTSEIRRMLIGRELFAETA
CHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]