Click here to switch to the map view.

The map label for this gene is 53721333

Identifier: 53721333

GI number: 53721333

Start: 400571

End: 401470

Strand: Reverse

Name: 53721333

Synonym: BPSS0298

Alternate gene names: NA

Gene position: 401470-400571 (Counterclockwise)

Preceding gene: 53721334

Following gene: 53721331

Centisome position: 12.65

GC content: 69.78

Gene sequence:

>900_bases
ATGGCTTCGTTGATTCTCGTTCTCGCCTGCCTCGTCGCGGGCGCCGCGCTTGCGCGGAGCAAGCGCCTGCCGGCCAATTT
CCCGGCCAGTCTCAATTACTTCGTGATCCAGATTTCGTTGCCCGCGCTCGTGCTGCAGCACCTGCACCGAATCGCGTTCG
GCGCGGACGTGGTGTGGCTGTTCGCGACGCCCGCGATCGTGTTCGCGGCCACCGCCGCGCTCGCGCTCGCAGCCGGCGCG
CTGCTGCGCCTGGACAAGGCGACGGTCGGCTGCCTCACGCTCGTGTGCGGCACGAGCAATACGTCGATCGTCGGCGTGCC
GGTCGTGCAGGCGCTGATCGGAAGCGCTGCGGTCGGCCACGCGCTCGTCGTCGATCAGGCGAACTTCATCGTGATGTGCA
CGGCGGGCCTCGTCGCCGCCGATCTGTACGCGGGCGGCGCGACGCGCTGGCGCGGCGTCGCGCGGCAACTTGCCGGCTAC
CGGCCGATTCAGGCGATGGCGCTTGCGCTGCTGTTGCGGCCGGTGCCGTTTGCACCCGTCGTCGAGGACGTGCTGACCCT
GCTCGGCGCGACGCTCACGCCGATCGCGATGATCTCCGTGGGGGCGAGCTTCAGCGTGCGCCACGCGCGCGACGCCGCGC
GCAATTTCCTGGTCGGCATCGGCCTGAAGCTGCTCGTCGTGCCGGCGATCGTGCTCGCATGCGGGCTCTACGTGTTCTCG
CAGCAGGGTGTGCCGCTCGCCGTCGCGCTCGTGCAGGCGACGATGCCGCCGATGATCGTCGCGGGGCTCATCGCAATCGA
CAAGAAGCTCGATCCGCCGCTCGCGGGCGCGCTGATGACGCTGGGCGTGCCGGTGTCGATCGCCGCCGCCTGGCTATGGC
GCGGCGTGCTGCCTTATTGA

Upstream 100 bases:

>100_bases
CGGTCCGTCGCGTGCGCGCCGGCCCCGCCGATTTTCGACACCAACCCGCACGGGCCGCCCGCCGGGCCGCCCTGCATCCG
ATTCGTTCAAACGCCGATCG

Downstream 100 bases:

>100_bases
CAAGCAGCACGAAACGATCGCGCCGATGCCTTCGCAATGCGAATTGTTTTCGCCGCGCGCCATCGCCCATCGCGTATGCC
CGCGCATGAGCCGCGCCGCG

Product: transport related membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MASLILVLACLVAGAALARSKRLPANFPASLNYFVIQISLPALVLQHLHRIAFGADVVWLFATPAIVFAATAALALAAGA
LLRLDKATVGCLTLVCGTSNTSIVGVPVVQALIGSAAVGHALVVDQANFIVMCTAGLVAADLYAGGATRWRGVARQLAGY
RPIQAMALALLLRPVPFAPVVEDVLTLLGATLTPIAMISVGASFSVRHARDAARNFLVGIGLKLLVVPAIVLACGLYVFS
QQGVPLAVALVQATMPPMIVAGLIAIDKKLDPPLAGALMTLGVPVSIAAAWLWRGVLPY

Sequences:

>Translated_299_residues
MASLILVLACLVAGAALARSKRLPANFPASLNYFVIQISLPALVLQHLHRIAFGADVVWLFATPAIVFAATAALALAAGA
LLRLDKATVGCLTLVCGTSNTSIVGVPVVQALIGSAAVGHALVVDQANFIVMCTAGLVAADLYAGGATRWRGVARQLAGY
RPIQAMALALLLRPVPFAPVVEDVLTLLGATLTPIAMISVGASFSVRHARDAARNFLVGIGLKLLVVPAIVLACGLYVFS
QQGVPLAVALVQATMPPMIVAGLIAIDKKLDPPLAGALMTLGVPVSIAAAWLWRGVLPY
>Mature_298_residues
ASLILVLACLVAGAALARSKRLPANFPASLNYFVIQISLPALVLQHLHRIAFGADVVWLFATPAIVFAATAALALAAGAL
LRLDKATVGCLTLVCGTSNTSIVGVPVVQALIGSAAVGHALVVDQANFIVMCTAGLVAADLYAGGATRWRGVARQLAGYR
PIQAMALALLLRPVPFAPVVEDVLTLLGATLTPIAMISVGASFSVRHARDAARNFLVGIGLKLLVVPAIVLACGLYVFSQ
QGVPLAVALVQATMPPMIVAGLIAIDKKLDPPLAGALMTLGVPVSIAAAWLWRGVLPY

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776
- InterPro:   IPR014024 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 30788; Mature: 30657

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLILVLACLVAGAALARSKRLPANFPASLNYFVIQISLPALVLQHLHRIAFGADVVWL
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCHHHH
FATPAIVFAATAALALAAGALLRLDKATVGCLTLVCGTSNTSIVGVPVVQALIGSAAVGH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEHHHHHHHHHHHHHHCC
ALVVDQANFIVMCTAGLVAADLYAGGATRWRGVARQLAGYRPIQAMALALLLRPVPFAPV
EEEEECCCEEEEECHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHH
VEDVLTLLGATLTPIAMISVGASFSVRHARDAARNFLVGIGLKLLVVPAIVLACGLYVFS
HHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QQGVPLAVALVQATMPPMIVAGLIAIDKKLDPPLAGALMTLGVPVSIAAAWLWRGVLPY
CCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ASLILVLACLVAGAALARSKRLPANFPASLNYFVIQISLPALVLQHLHRIAFGADVVWL
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCHHHH
FATPAIVFAATAALALAAGALLRLDKATVGCLTLVCGTSNTSIVGVPVVQALIGSAAVGH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEHHHHHHHHHHHHHHCC
ALVVDQANFIVMCTAGLVAADLYAGGATRWRGVARQLAGYRPIQAMALALLLRPVPFAPV
EEEEECCCEEEEECHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHH
VEDVLTLLGATLTPIAMISVGASFSVRHARDAARNFLVGIGLKLLVVPAIVLACGLYVFS
HHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QQGVPLAVALVQATMPPMIVAGLIAIDKKLDPPLAGALMTLGVPVSIAAAWLWRGVLPY
CCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]