| Definition | Burkholderia pseudomallei K96243 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_006351 |
| Length | 3,173,005 |
Click here to switch to the map view.
The map label for this gene is yueD [H]
Identifier: 53721192
GI number: 53721192
Start: 203913
End: 204674
Strand: Reverse
Name: yueD [H]
Synonym: BPSS0156
Alternate gene names: 53721192
Gene position: 204674-203913 (Counterclockwise)
Preceding gene: 53721202
Following gene: 53721191
Centisome position: 6.45
GC content: 71.39
Gene sequence:
>762_bases ATGACCACTTCCCCTTCTCCATTGCCCGCCGTTCGCGCGATCGTCACCGGTCACACGCGCGGGCTCGGCGAGGCGCTTGC CGAGCAGTTGCTGCGGCGGGACATCGCCGTGCTCGGTCTGTCGCGCGGCCGCCATCCGTCGCTCGCCTCGCACGCGCCAG AGCGCCTCGTCGAGGCCGAGCTGGATCTGTCGGAGCCGGCGCGCGTTCAAGCGTGGCTCGGCGGCGACACGCTCGGCGCA TTCGTCGCCGGCGCGAGCCGCGTGCTGCTGTTCAACAACGCGGGCACCGTCGAGCCGATCGGCCCGCTCGATACGCAGGA CACGGCGGCGATCGCACGCGCGGTCGGCCTGAACGTCGCGACGCCGCTGATGCTCGCGAGCGCGCTCGCGAAGCTCGCGC CGGATGCGCTCGAGCGCCGCATCGCGCACATCTCGAGCGGCGCGGCGCGCAACGCGTATGCGGGCTGGAGCGTCTATTGC GCGACCAAGGCCGCGCTCGATCACCACGCTCGGGCGGTCGCGCTGGATGCGAACCGCGCGCTGCGGATCTGCAGCGTCGC GCCCGGCGTCGTGGATACCGGCATGCAGGCGACGATCCGCGCGACGAGCGACGAGCGGCTTCCCTCGCGCGAGCGGTTCG CGCGACTGAAGTCGAGCGGCGCGCTGTCGACGCCCGACGATGCCGCGCGTCAATTGATCGATTATGTGCTGAGCGACGAT TTCGGCTCGACGCCGACCGCCGACATTCGCCATCTGGGGTGA
Upstream 100 bases:
>100_bases GCGACGGCCGGCCGCGCGACGCGTGAATCGGCCGCCGGGCTTCGCCGGATGCCGCGCCGCGCGCGTCACGCATCCCGTTT CCATCACTTTGCGCATCGAC
Downstream 100 bases:
>100_bases GCCGCGGCGCGCGGCGACGAAGCGCCGGCGTCGAACCGCGCGCGCTCGAACGGATTCGGCGACGGCGCGCCCGACAGTCG CGAGGCGCGCGCCGCGCGAT
Product: short chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MTTSPSPLPAVRAIVTGHTRGLGEALAEQLLRRDIAVLGLSRGRHPSLASHAPERLVEAELDLSEPARVQAWLGGDTLGA FVAGASRVLLFNNAGTVEPIGPLDTQDTAAIARAVGLNVATPLMLASALAKLAPDALERRIAHISSGAARNAYAGWSVYC ATKAALDHHARAVALDANRALRICSVAPGVVDTGMQATIRATSDERLPSRERFARLKSSGALSTPDDAARQLIDYVLSDD FGSTPTADIRHLG
Sequences:
>Translated_253_residues MTTSPSPLPAVRAIVTGHTRGLGEALAEQLLRRDIAVLGLSRGRHPSLASHAPERLVEAELDLSEPARVQAWLGGDTLGA FVAGASRVLLFNNAGTVEPIGPLDTQDTAAIARAVGLNVATPLMLASALAKLAPDALERRIAHISSGAARNAYAGWSVYC ATKAALDHHARAVALDANRALRICSVAPGVVDTGMQATIRATSDERLPSRERFARLKSSGALSTPDDAARQLIDYVLSDD FGSTPTADIRHLG >Mature_252_residues TTSPSPLPAVRAIVTGHTRGLGEALAEQLLRRDIAVLGLSRGRHPSLASHAPERLVEAELDLSEPARVQAWLGGDTLGAF VAGASRVLLFNNAGTVEPIGPLDTQDTAAIARAVGLNVATPLMLASALAKLAPDALERRIAHISSGAARNAYAGWSVYCA TKAALDHHARAVALDANRALRICSVAPGVVDTGMQATIRATSDERLPSRERFARLKSSGALSTPDDAARQLIDYVLSDDF GSTPTADIRHLG
Specific function: Reduces benzil stereospecifically to (S)-benzoin. Can also reduces 1-phenyl-1,2-propanedione, 1,4-naphthoquinone, 1-(4- methyl-phenyl)-2-phenyl-ethane-1,2-dione, 1-(4-fluoro-phenyl)-2- phenyl-ethane-1,2-dione, methyl benzoylformate, p- nitrobenzaldehyde i
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI4507185, Length=200, Percent_Identity=33.5, Blast_Score=89, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6322226, Length=193, Percent_Identity=29.5336787564767, Blast_Score=79, Evalue=9e-16, Organism=Saccharomyces cerevisiae, GI6322227, Length=244, Percent_Identity=28.6885245901639, Blast_Score=77, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26489; Mature: 26358
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSPSPLPAVRAIVTGHTRGLGEALAEQLLRRDIAVLGLSRGRHPSLASHAPERLVEAE CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH LDLSEPARVQAWLGGDTLGAFVAGASRVLLFNNAGTVEPIGPLDTQDTAAIARAVGLNVA CCCCCCCEEEEEECCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHH TPLMLASALAKLAPDALERRIAHISSGAARNAYAGWSVYCATKAALDHHARAVALDANRA HHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHEEEEECCCCC LRICSVAPGVVDTGMQATIRATSDERLPSRERFARLKSSGALSTPDDAARQLIDYVLSDD EEEECCCCCHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC FGSTPTADIRHLG CCCCCCCHHCCCC >Mature Secondary Structure TTSPSPLPAVRAIVTGHTRGLGEALAEQLLRRDIAVLGLSRGRHPSLASHAPERLVEAE CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH LDLSEPARVQAWLGGDTLGAFVAGASRVLLFNNAGTVEPIGPLDTQDTAAIARAVGLNVA CCCCCCCEEEEEECCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHH TPLMLASALAKLAPDALERRIAHISSGAARNAYAGWSVYCATKAALDHHARAVALDANRA HHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHEEEEECCCCC LRICSVAPGVVDTGMQATIRATSDERLPSRERFARLKSSGALSTPDDAARQLIDYVLSDD EEEECCCCCHHHCCCEEEEEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC FGSTPTADIRHLG CCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11745140; 11796169 [H]