| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is gidA [H]
Identifier: 53721015
GI number: 53721015
Start: 4045485
End: 4047458
Strand: Reverse
Name: gidA [H]
Synonym: BPSL3408
Alternate gene names: 53721015
Gene position: 4047458-4045485 (Counterclockwise)
Preceding gene: 53721016
Following gene: 53721014
Centisome position: 99.34
GC content: 61.3
Gene sequence:
>1974_bases ATGCTTTATCCCACTGAATTTGACGTCATCGTCGTCGGCGGCGGTCATGCCGGCACGGAGGCCGCATTGGCTTCCGCACG CATGGGCGCCAAGACGCTCCTGCTGACGCACAACATCGAAACCCTTGGGCAGATGAGCTGCAACCCGTCGATCGGCGGGA TCGGCAAGGGCCATCTGGTCAAGGAAGTCGACGCGCTTGGCGGTGCGATGGCGGCTGCCACAGACGAAGGCGGCATCCAG TTCCGCATTCTGAATTCGTCGAAGGGGCCGGCGGTCCGTGCGACGCGCGCTCAGGCAGATCGCGTGCTGTACAAGCAGGC GATCCGCCGTCGTCTGGAGAATCAGCCGAATCTGTGGTTGTTCCAGCAGGCTGTCGACGATCTGATGGTGGAGGGGGACC GGGTTGTCGGCGCGGTTACCCAGGTTGGCGTCCGGTTCCGGGCGCGCGCGGTGGTATTGACTGCCGGTACGTTCCTGGAC GGCAAGATCCATGTCGGGCTCAATCACTATACGGGCGGTCGCGCGGGTGATCCGGCGGCCGTGTCCTTGTCGTCGCGGCT GAAGGAACTGAATCTGCCGCAAGGGCGGCTGAAGACCGGAACGCCGCCGCGCATCGACGGCCGAACGATCGATTTCTCGA AGCTCGACGAGCAGCCGGGCGATCTTGATCCGATTCCGGTGTTCTCGTTCCTTGGTCGGGCCGAGCAGCACCCCCAACAG TTACCGTGCTGGGTCACGCATACCAACGAGCGCACGCACGACATTATCCGCAGCGGCCTCGATCGTTCGCCGATGTATAC GGGCGTCATCGAAGGCGTGGGGCCCCGCTATTGCCCGTCGATCGAGGACAAGATTCATCGCTTTGCGTCGAAAGATTCGC ATCAGATCTTTCTTGAGCCGGAAGGGCTGACGACCAACGAGTTCTATCCGAACGGTATTTCAACCAGCTTGCCGTTCGAT GTGCAGCTTGCGCTCGTGCATTCGATGCGAGGTTTGGAACAGGCGCATATCCTGCGCCCAGGTTATGCGATCGAGTACGA TTATTTCGATCCCCGCGCGCTGAAATCGTCGCTCGAAACCAAGGCAATTGGCGGTCTATTCTTTGCGGGGCAAATCAACG GCACGACCGGCTATGAAGAAGCCGCTGCACAAGGCCTACTCGCGGGCATCAACGCGGGCCGCTATGCACAGGAAAAAGAC GCATGGTGTCCGCGGCGGGATCAGGCGTATCTCGGTGTGCTCGTCGATGATCTGGTGACGCGCGGCATATCCGAGCCTTA TCGGATGTTCACGAGCCGCGCCGAGTATCGGCTCAGCCTCCGCGAGGACAACGCGGACATGCGTCTGACCGAAATCGGGC GTGAATTGGGTGTCGTTGATGACGTTCGCTGGGACGCATTTAACCGAAAGCGCGATGCTGTTTCACGTGAAACCGAACGG CTGCGCACGACGTGGGTAACGCCAAAGACGTTGCCGGCCGACGAAGCCACCGCGCTGCTCGGCAAGCCGATCGATCACGA ATACAGTCTCGCGGAGCTGCTACGCCGGCCGGGCGTCAGCTATGACGGCGTGTGCGGTTTGCGTGGCGGCGAGTGTGGCC CATCCGAACCGCTGGCCGAAGACGAACTGTTGCTTGCGCAGATCAAGGAGCAGATTGAGATCGGCATCAAGTACCAGGGC TATATCGAGCGTCAGGCCGGCGAAATCGAACGGAATGGTGCAAACGAAAATACGCGATTGCCTGACGGGATCGACTACAC GGAGGTGCGTGGCTTGTCGTTCGAAGTCAGTCAGAAGCTGAACCAATTCCGCCCGGAAACGATCGGGCAGGCATCGCGGA TCTCGGGCATGACGCCCGCTGCCATCTCGCTGCTGATGGTGCATCTGAAGAAGCGCGGGCTGGGCCGGCGAAAGGGCGCG GACAGTGTACCGGGCGCCGACGTGCAAGCCGACAACACGGCGGCGCAACAATGA
Upstream 100 bases:
>100_bases TCGGCCGTTCGAACAAGATTCGGGCCAAAACCGAACCCGTTATAATTCGGCCCATACATTTCTCTGATAGGTTCGTGCAC CGTCCTGCGCGAAGTCCGCC
Downstream 100 bases:
>100_bases CGGTGCAACAGCGTCGCCGCCCCCCGATTGCCAGCCGGGAAACGCTGCAAGCATTGCTGTCGGAGGGTGCGCAAGCGCTG GGCGTCGCGTTGAGCGATGC
Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
Products: NA
Alternate protein names: Glucose-inhibited division protein A [H]
Number of amino acids: Translated: 657; Mature: 657
Protein sequence:
>657_residues MLYPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMAAATDEGGIQ FRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAVDDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLD GKIHVGLNHYTGGRAGDPAAVSLSSRLKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQ LPCWVTHTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTNEFYPNGISTSLPFD VQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGGLFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKD AWCPRRDQAYLGVLVDDLVTRGISEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETER LRTTWVTPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLLAQIKEQIEIGIKYQG YIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPETIGQASRISGMTPAAISLLMVHLKKRGLGRRKGA DSVPGADVQADNTAAQQ
Sequences:
>Translated_657_residues MLYPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMAAATDEGGIQ FRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAVDDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLD GKIHVGLNHYTGGRAGDPAAVSLSSRLKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQ LPCWVTHTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTNEFYPNGISTSLPFD VQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGGLFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKD AWCPRRDQAYLGVLVDDLVTRGISEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETER LRTTWVTPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLLAQIKEQIEIGIKYQG YIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPETIGQASRISGMTPAAISLLMVHLKKRGLGRRKGA DSVPGADVQADNTAAQQ >Mature_657_residues MLYPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMAAATDEGGIQ FRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWLFQQAVDDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLD GKIHVGLNHYTGGRAGDPAAVSLSSRLKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQ LPCWVTHTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEPEGLTTNEFYPNGISTSLPFD VQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLETKAIGGLFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKD AWCPRRDQAYLGVLVDDLVTRGISEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETER LRTTWVTPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAEDELLLAQIKEQIEIGIKYQG YIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKLNQFRPETIGQASRISGMTPAAISLLMVHLKKRGLGRRKGA DSVPGADVQADNTAAQQ
Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 [H]
COG id: COG0445
COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MnmG family [H]
Homologues:
Organism=Homo sapiens, GI74024895, Length=653, Percent_Identity=44.104134762634, Blast_Score=482, Evalue=1e-136, Organism=Homo sapiens, GI19882217, Length=678, Percent_Identity=42.4778761061947, Blast_Score=468, Evalue=1e-132, Organism=Homo sapiens, GI183227703, Length=693, Percent_Identity=41.5584415584416, Blast_Score=463, Evalue=1e-130, Organism=Escherichia coli, GI2367273, Length=639, Percent_Identity=69.6400625978091, Blast_Score=910, Evalue=0.0, Organism=Caenorhabditis elegans, GI17534255, Length=637, Percent_Identity=41.6012558869702, Blast_Score=468, Evalue=1e-132, Organism=Saccharomyces cerevisiae, GI6321202, Length=633, Percent_Identity=45.0236966824645, Blast_Score=506, Evalue=1e-144, Organism=Drosophila melanogaster, GI24658174, Length=648, Percent_Identity=45.679012345679, Blast_Score=501, Evalue=1e-142,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004416 - InterPro: IPR002218 - InterPro: IPR020595 [H]
Pfam domain/function: PF01134 GIDA [H]
EC number: NA
Molecular weight: Translated: 71996; Mature: 71996
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: PS01280 GIDA_1 ; PS01281 GIDA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLYPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLV CCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEECHHHHHCCCCCCCCCCCCCCHHH KEVDALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWL HHHHHHCCHHEECCCCCCEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEE FQQAVDDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAA HHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEEEECEEECCEEEEEEECCCCCCCCCCCE VSLSSRLKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQ EEHHHHHHHCCCCCCCCCCCCCCCCCCCEECHHHHCCCCCCCCCCHHHHHHCHHHCCCCC LPCWVTHTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEP CCEEEECCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEECC EGLTTNEFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLET CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHEECCCEEEEECCCCHHHHHHHHHH KAIGGLFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVT HHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH RGISEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETER HCCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH LRTTWVTPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAE HHHEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCH DELLLAQIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKL HHHHHHHHHHHHHCCCEEECEEECCCCCHHCCCCCCCCCCCCCCCHHHHCCCCHHHHHHH NQFRPETIGQASRISGMTPAAISLLMVHLKKRGLGRRKGADSVPGADVQADNTAAQQ HHCCCHHCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCC >Mature Secondary Structure MLYPTEFDVIVVGGGHAGTEAALASARMGAKTLLLTHNIETLGQMSCNPSIGGIGKGHLV CCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEECHHHHHCCCCCCCCCCCCCCHHH KEVDALGGAMAAATDEGGIQFRILNSSKGPAVRATRAQADRVLYKQAIRRRLENQPNLWL HHHHHHCCHHEECCCCCCEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEE FQQAVDDLMVEGDRVVGAVTQVGVRFRARAVVLTAGTFLDGKIHVGLNHYTGGRAGDPAA HHHHHHHHHHCCCHHHHHHHHHHHHHEEEEEEEEECEEECCEEEEEEECCCCCCCCCCCE VSLSSRLKELNLPQGRLKTGTPPRIDGRTIDFSKLDEQPGDLDPIPVFSFLGRAEQHPQQ EEHHHHHHHCCCCCCCCCCCCCCCCCCCEECHHHHCCCCCCCCCCHHHHHHCHHHCCCCC LPCWVTHTNERTHDIIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIFLEP CCEEEECCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEEECC EGLTTNEFYPNGISTSLPFDVQLALVHSMRGLEQAHILRPGYAIEYDYFDPRALKSSLET CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHEECCCEEEEECCCCHHHHHHHHHH KAIGGLFFAGQINGTTGYEEAAAQGLLAGINAGRYAQEKDAWCPRRDQAYLGVLVDDLVT HHHCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH RGISEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRETER HCCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH LRTTWVTPKTLPADEATALLGKPIDHEYSLAELLRRPGVSYDGVCGLRGGECGPSEPLAE HHHEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCH DELLLAQIKEQIEIGIKYQGYIERQAGEIERNGANENTRLPDGIDYTEVRGLSFEVSQKL HHHHHHHHHHHHHCCCEEECEEECCCCCHHCCCCCCCCCCCCCCCHHHHCCCCHHHHHHH NQFRPETIGQASRISGMTPAAISLLMVHLKKRGLGRRKGADSVPGADVQADNTAAQQ HHCCCHHCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA