Click here to switch to the map view.

The map label for this gene is 53720949

Identifier: 53720949

GI number: 53720949

Start: 3960414

End: 3962075

Strand: Reverse

Name: 53720949

Synonym: BPSL3339

Alternate gene names: NA

Gene position: 3962075-3960414 (Counterclockwise)

Preceding gene: 53720950

Following gene: 53720948

Centisome position: 97.24

GC content: 65.94

Gene sequence:

>1662_bases
ATGTCCTATGTGTACGTCGACGGTGCCGATCCCCGTCATTCGACGCTTCAAAAGGGCTTCAACCTGCGCTGGCCGCCGAC
GGCCGAGGCCGGCGCGGCGGCGATCTATGTCTGCCGCACGGCGGACGACGTGATCGCGGCGTCGCGCGACGCGCTCGCGA
AAGGTTGCCGGATCACGGTGCGCAGCGGCGGGCACTGCTATGAGGGGTTCGTCGCGAACCGGCTGCCGGACGACCACGGG
CGGCCGCTCGCGATCATCGATCTCGGCCTGATGTCGGGGTTCGATATCGATGATCGCGGGCAGATCGCGTCGCCGTTCGA
TGCGGCGGGCGCGCCGCGCTATCGGGTTCGCGTCGCGGCGGGCCGCCAGAACTGGGACGGCTATGTCGGCCTGTACAAGA
CCATGGGCAAGACGCTGCCCGGTGGCTCGTGCTATTCGGTCGGCGCAGGCGGCCATATCGTCGGCGGCGGGTATGGGCTG
CTCTCGCGTCTGCACGGGCTGACGGTCGACTGGCTGACGGGCGTCGATATCCTCGCGCCCGCCGCCGGCGGCGCGCTCGG
CGCGAAGCACGTGCATTCCGGCAGCACCGATCCGGCGGATCGGGCGCTCTTCATCGCATGTCGCGGCGGGGGCGGCGGCA
ACTTCGGCGTGATCCTGAACTACTACTTCAACGCGCTTCCCAACGCGCCGCGTACCGCGTATTGGCTGACGCTCGCGTAT
GACTGGTCGCACTTCACGCAAGCGAGCTTCGGCCATTTCCTCCAAACCTACTGGGATTGGTTCAGCCGCAACGACGCGAA
CTGGAACGCCGCGGACCCGGCGCTCGCCAATGGCGGGTTGTTCACGCTTCTGAAACTGCAGCATCGCTCGGCCGGGCCGA
TCGTGCTCGCGATCCAGTACACGGGCAAGGACGGAACGGTGGGCGGCCCGGAGGATGCGCCGTTCATCGATTTCGTCGAC
ACGATGAACGCGGCGGCGAATCGTCTGCCCGTCGTCTGGGACCGGTTCGTCGCGCCGAATCTGCCGGCGCTCGGCCACCC
GCTGGCCGGCCTGCGCATCGCGCACGCGGCGCGGAGCGCATTGAAGATGGACTGGCTGTATCTGACGCAGACGATCAACA
CGTCGGGCGCGAACCGGCGCGGCAAGTACAAGTCCGCCTATCAGATCGGCAATTTCGGCGAGACCGAGGTCGACGCGCTG
TGGCGATATCTGAACGGCGCGGACGATCCGCGCCTGAGCCAGACGCTCGTGCAGATCGATTCGTACGGCGGCTGCGTAAA
CGCGAACGACGAAAGCGCGAATCCGACGTCGGTCTATCAGCGCCGTTCGCTGCTGAAATCGCAGTACCAAACCTACTGGA
CGAATCCCGCCGACGACGCCTTCCACGTCGAATGGCTGCACGATCTGTTCTCCGCGGTGCACGCGGATCAGGGCGGCAAG
CCGTACCGCGACGCGAGCGGCCGCTACGAAGGCTGCTACATCAACTATCCGGACATCGACATGAAGTATCTCGGCAGCGA
TCCGGCGCAGATCGATCCGAGGTGGCTCGATCTGTACTACGGCGACAAGGCCGCATCGCTGATCGCGACGAAGCGCTCGG
TCGATCCGTCGAATCTGTTCATGCACGAGATGTCGATTCCGCTGACGCCGCCGCTTGGTTGA

Upstream 100 bases:

>100_bases
CCGCACCGCGATCGTCGCGCCGCTTGTACGATGCGGGCGCGCCGCGCCGCGCGGTTGTTCCCCCCGGCTGCGAAGCATGC
GGCCTTCGCGGGAAGTTCCG

Downstream 100 bases:

>100_bases
CCTCAATCGTGGAGCGTTGCCGGGCGCGTGCGTTCGGCGGCGCGACGCTCGCCTCAGGCACGGTTCGCGCGGCCGCCCGC
TTGGGCGGCCGCGCCCGTCT

Product: putative oxidoreductase

Products: NA

Alternate protein names: Secreted FAD-Linked Oxidase; Berberine/Berberine Domain Protein; Berberine/Berberine Domain-Containing Protein; Dehydrogenase; FAD Linked Oxidase Domain-Containing Protein; Hexose Oxidase; FAD/FMN-Dependent Dehydrogenase; FAD/FMN-Containing Dehydrogenase; Fad Linked Oxidase Oxidoreductase Protein

Number of amino acids: Translated: 553; Mature: 552

Protein sequence:

>553_residues
MSYVYVDGADPRHSTLQKGFNLRWPPTAEAGAAAIYVCRTADDVIAASRDALAKGCRITVRSGGHCYEGFVANRLPDDHG
RPLAIIDLGLMSGFDIDDRGQIASPFDAAGAPRYRVRVAAGRQNWDGYVGLYKTMGKTLPGGSCYSVGAGGHIVGGGYGL
LSRLHGLTVDWLTGVDILAPAAGGALGAKHVHSGSTDPADRALFIACRGGGGGNFGVILNYYFNALPNAPRTAYWLTLAY
DWSHFTQASFGHFLQTYWDWFSRNDANWNAADPALANGGLFTLLKLQHRSAGPIVLAIQYTGKDGTVGGPEDAPFIDFVD
TMNAAANRLPVVWDRFVAPNLPALGHPLAGLRIAHAARSALKMDWLYLTQTINTSGANRRGKYKSAYQIGNFGETEVDAL
WRYLNGADDPRLSQTLVQIDSYGGCVNANDESANPTSVYQRRSLLKSQYQTYWTNPADDAFHVEWLHDLFSAVHADQGGK
PYRDASGRYEGCYINYPDIDMKYLGSDPAQIDPRWLDLYYGDKAASLIATKRSVDPSNLFMHEMSIPLTPPLG

Sequences:

>Translated_553_residues
MSYVYVDGADPRHSTLQKGFNLRWPPTAEAGAAAIYVCRTADDVIAASRDALAKGCRITVRSGGHCYEGFVANRLPDDHG
RPLAIIDLGLMSGFDIDDRGQIASPFDAAGAPRYRVRVAAGRQNWDGYVGLYKTMGKTLPGGSCYSVGAGGHIVGGGYGL
LSRLHGLTVDWLTGVDILAPAAGGALGAKHVHSGSTDPADRALFIACRGGGGGNFGVILNYYFNALPNAPRTAYWLTLAY
DWSHFTQASFGHFLQTYWDWFSRNDANWNAADPALANGGLFTLLKLQHRSAGPIVLAIQYTGKDGTVGGPEDAPFIDFVD
TMNAAANRLPVVWDRFVAPNLPALGHPLAGLRIAHAARSALKMDWLYLTQTINTSGANRRGKYKSAYQIGNFGETEVDAL
WRYLNGADDPRLSQTLVQIDSYGGCVNANDESANPTSVYQRRSLLKSQYQTYWTNPADDAFHVEWLHDLFSAVHADQGGK
PYRDASGRYEGCYINYPDIDMKYLGSDPAQIDPRWLDLYYGDKAASLIATKRSVDPSNLFMHEMSIPLTPPLG
>Mature_552_residues
SYVYVDGADPRHSTLQKGFNLRWPPTAEAGAAAIYVCRTADDVIAASRDALAKGCRITVRSGGHCYEGFVANRLPDDHGR
PLAIIDLGLMSGFDIDDRGQIASPFDAAGAPRYRVRVAAGRQNWDGYVGLYKTMGKTLPGGSCYSVGAGGHIVGGGYGLL
SRLHGLTVDWLTGVDILAPAAGGALGAKHVHSGSTDPADRALFIACRGGGGGNFGVILNYYFNALPNAPRTAYWLTLAYD
WSHFTQASFGHFLQTYWDWFSRNDANWNAADPALANGGLFTLLKLQHRSAGPIVLAIQYTGKDGTVGGPEDAPFIDFVDT
MNAAANRLPVVWDRFVAPNLPALGHPLAGLRIAHAARSALKMDWLYLTQTINTSGANRRGKYKSAYQIGNFGETEVDALW
RYLNGADDPRLSQTLVQIDSYGGCVNANDESANPTSVYQRRSLLKSQYQTYWTNPADDAFHVEWLHDLFSAVHADQGGKP
YRDASGRYEGCYINYPDIDMKYLGSDPAQIDPRWLDLYYGDKAASLIATKRSVDPSNLFMHEMSIPLTPPLG

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60135; Mature: 60004

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYVYVDGADPRHSTLQKGFNLRWPPTAEAGAAAIYVCRTADDVIAASRDALAKGCRITV
CEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCHHHHHCCCEEEE
RSGGHCYEGFVANRLPDDHGRPLAIIDLGLMSGFDIDDRGQIASPFDAAGAPRYRVRVAA
ECCCCEECCHHHHCCCCCCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
GRQNWDGYVGLYKTMGKTLPGGSCYSVGAGGHIVGGGYGLLSRLHGLTVDWLTGVDILAP
CCCCCCCHHHHHHHHCCCCCCCCEEEECCCCEEECCHHHHHHHHHCCEEHHHCCCHHCCC
AAGGALGAKHVHSGSTDPADRALFIACRGGGGGNFGVILNYYFNALPNAPRTAYWLTLAY
CCCCCCCCHHCCCCCCCCCCCEEEEEEECCCCCCHHHEEEEHHHHCCCCCCEEEEEEEEE
DWSHFTQASFGHFLQTYWDWFSRNDANWNAADPALANGGLFTLLKLQHRSAGPIVLAIQY
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEE
TGKDGTVGGPEDAPFIDFVDTMNAAANRLPVVWDRFVAPNLPALGHPLAGLRIAHAARSA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
LKMDWLYLTQTINTSGANRRGKYKSAYQIGNFGETEVDALWRYLNGADDPRLSQTLVQID
HHHEEEEEEEEECCCCCCCCCCCCHHEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
SYGGCVNANDESANPTSVYQRRSLLKSQYQTYWTNPADDAFHVEWLHDLFSAVHADQGGK
CCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCC
PYRDASGRYEGCYINYPDIDMKYLGSDPAQIDPRWLDLYYGDKAASLIATKRSVDPSNLF
CCCCCCCCCCCEEEECCCCCCEECCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCHHHEE
MHEMSIPLTPPLG
EEECCCCCCCCCC
>Mature Secondary Structure 
SYVYVDGADPRHSTLQKGFNLRWPPTAEAGAAAIYVCRTADDVIAASRDALAKGCRITV
EEEEECCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCHHHHHCCCEEEE
RSGGHCYEGFVANRLPDDHGRPLAIIDLGLMSGFDIDDRGQIASPFDAAGAPRYRVRVAA
ECCCCEECCHHHHCCCCCCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
GRQNWDGYVGLYKTMGKTLPGGSCYSVGAGGHIVGGGYGLLSRLHGLTVDWLTGVDILAP
CCCCCCCHHHHHHHHCCCCCCCCEEEECCCCEEECCHHHHHHHHHCCEEHHHCCCHHCCC
AAGGALGAKHVHSGSTDPADRALFIACRGGGGGNFGVILNYYFNALPNAPRTAYWLTLAY
CCCCCCCCHHCCCCCCCCCCCEEEEEEECCCCCCHHHEEEEHHHHCCCCCCEEEEEEEEE
DWSHFTQASFGHFLQTYWDWFSRNDANWNAADPALANGGLFTLLKLQHRSAGPIVLAIQY
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEE
TGKDGTVGGPEDAPFIDFVDTMNAAANRLPVVWDRFVAPNLPALGHPLAGLRIAHAARSA
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
LKMDWLYLTQTINTSGANRRGKYKSAYQIGNFGETEVDALWRYLNGADDPRLSQTLVQID
HHHEEEEEEEEECCCCCCCCCCCCHHEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
SYGGCVNANDESANPTSVYQRRSLLKSQYQTYWTNPADDAFHVEWLHDLFSAVHADQGGK
CCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCC
PYRDASGRYEGCYINYPDIDMKYLGSDPAQIDPRWLDLYYGDKAASLIATKRSVDPSNLF
CCCCCCCCCCCEEEECCCCCCEECCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCHHHEE
MHEMSIPLTPPLG
EEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA