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The map label for this gene is yecD [H]

Identifier: 53720678

GI number: 53720678

Start: 3662327

End: 3662854

Strand: Reverse

Name: yecD [H]

Synonym: BPSL3069

Alternate gene names: 53720678

Gene position: 3662854-3662327 (Counterclockwise)

Preceding gene: 53720679

Following gene: 53720677

Centisome position: 89.9

GC content: 70.64

Gene sequence:

>528_bases
GTGGACATGCAGCGCGGGCTGCTGCAGCGGGCGAAGCCCGCGCATCGGCTCGACGAGGTCGTCGCGGGCATCAACCGGCT
GACGGCGGCGGCGCGCGCGGCGGGCGCGCCCGTCTGTTTCGTGCAGCACGACGGCGGCGCGGACGACGACGTCGTGCCCG
GCACGCCCGGTTGGCGGCTGCACGCGGAGCTCACGTGCGCCGACGCCGACTGGCGAATCCGCAAGCGCGCAAGCGATGCG
TTCCACGGCACGCCGCTTGCCGCGCAACTTTCCGCGCACGGCGTTGACGCGGTCGTGATCTGCGGCTACGCGTCGGAATT
CTGCGTCGATTCGGCGGCGCGCCGCGCGGCGCTCCTCGGCTATCGAACGACGGTCGTCTCCGATCTGCACACGACGAACG
ATCGCGCTCACCTGAGCGCGGCGCAAATCGTCGCGCATCACAATTTCATCTGGAGCCACTGTTCGTTCTCGGGCAACGGC
GTTGCGCCGCGGCCGCTCGACGAGGTGATCGCCGCGGAGTTCGCATGA

Upstream 100 bases:

>100_bases
CGATGTCGATGTCGGTGCAGGTGTCGATGCCGGCGGCCGGGGCGAATGGCTGAACGATGAAAACGGAGGGCGATGCATGG
CGAGGGCGGCGGTGATCGTG

Downstream 100 bases:

>100_bases
CCGTCAAGGCAGTCGTATTCGATTTCGGCGGCGTGCTGATCGACTGGAGCCCCGAGTATCTGTACCGGAAACTGATTCCC
GATGAAGCCGAGCGGCGCTG

Product: putative hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MDMQRGLLQRAKPAHRLDEVVAGINRLTAAARAAGAPVCFVQHDGGADDDVVPGTPGWRLHAELTCADADWRIRKRASDA
FHGTPLAAQLSAHGVDAVVICGYASEFCVDSAARRAALLGYRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWSHCSFSGNG
VAPRPLDEVIAAEFA

Sequences:

>Translated_175_residues
MDMQRGLLQRAKPAHRLDEVVAGINRLTAAARAAGAPVCFVQHDGGADDDVVPGTPGWRLHAELTCADADWRIRKRASDA
FHGTPLAAQLSAHGVDAVVICGYASEFCVDSAARRAALLGYRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWSHCSFSGNG
VAPRPLDEVIAAEFA
>Mature_175_residues
MDMQRGLLQRAKPAHRLDEVVAGINRLTAAARAAGAPVCFVQHDGGADDDVVPGTPGWRLHAELTCADADWRIRKRASDA
FHGTPLAAQLSAHGVDAVVICGYASEFCVDSAARRAALLGYRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWSHCSFSGNG
VAPRPLDEVIAAEFA

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

Organism=Escherichia coli, GI87081992, Length=142, Percent_Identity=35.2112676056338, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 18658; Mature: 18658

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMQRGLLQRAKPAHRLDEVVAGINRLTAAARAAGAPVCFVQHDGGADDDVVPGTPGWRL
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEE
HAELTCADADWRIRKRASDAFHGTPLAAQLSAHGVDAVVICGYASEFCVDSAARRAALLG
EEEEEECCCCHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHH
YRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWSHCSFSGNGVAPRPLDEVIAAEFA
HHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MDMQRGLLQRAKPAHRLDEVVAGINRLTAAARAAGAPVCFVQHDGGADDDVVPGTPGWRL
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEE
HAELTCADADWRIRKRASDAFHGTPLAAQLSAHGVDAVVICGYASEFCVDSAARRAALLG
EEEEEECCCCHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHH
YRTTVVSDLHTTNDRAHLSAAQIVAHHNFIWSHCSFSGNGVAPRPLDEVIAAEFA
HHHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]