| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is ycdJ [C]
Identifier: 53720007
GI number: 53720007
Start: 2899747
End: 2900775
Strand: Reverse
Name: ycdJ [C]
Synonym: BPSL2401
Alternate gene names: 53720007
Gene position: 2900775-2899747 (Counterclockwise)
Preceding gene: 53720012
Following gene: 53720005
Centisome position: 71.19
GC content: 68.9
Gene sequence:
>1029_bases GTGAGCGCCGCCGCGCGCGCTAAGGCCGACGGCCCCGCGTACGGCGCGGAGCTGGAAGGCTTCGCGTACGCGTATCCGGT GCATCGCTACGCGTTCACGTCGCAGCGCGAGACGCTGCAGATGGCGTATCTCGACGTGCGGCCCGAGCGTGCGAACGGCC GCACCGTCGTGCTGCTGCATGGGAAGAACTTCTGCGCGGGCACGTGGGAGCAGACGATCGAGGTGTTCGCGAAGGCGGGC TACCGCGTCGTCGCGCCCGATCAGATCGGCTTTTGCAAGTCGACGAAGCCCTTGCGCTATCAATACAGCTTCCAGCAGCT CGCGCACAACACGCACGCGCTGCTCGAATCGATCGGCGTGAAGGAGGCGACGGTCGTCGGCCATTCGACGGGCGGCATGC TCGCCGTGCGCTACGCGCTGATGTACCCGAGGGACACGCAGCAGTTGGTGCTCGTCAACCCGATCGGCCTCGAGGACTGG AAGGCGCTCGGTGTGCCGGCGTTGTCGGTCGACTATTGGTATGCGCGCGAGCTGAAGACGAGCGCCGACGTCATTCGACG CTACGAGCAGCGCACGTACTACGCGGGCGAGTGGTCACCCGCGTACGAGCGCTGGGTGCAGATGCTCGCCGGCCTGTATC GCGGACCGGGGCGCGACGTCGTCGCGTGGAATTCGGCGCTCGTCTACGACATGATCTTCACGCAGCCGGTGCTCTACGAG TTCGGCGCGATCCGGGTGCCGACGCTGCTCCTGATCGGCGACAAGGATACGACCGCGATCGGCAAGGATGTCGCGCCGCC CGACGTGCACGCGAAGCTCGGCCGCTATCCGGCGCTCGCGAAGCGCACGCAGGCGGCGATTCCGGGGGCGGTGCTCTACG AATTTCCGGCGCTCGGCCACGCGCCGCAGATCCAGGATCCGGCGACGTTCCACAAGGCGCTGCTCGACGGGCTCGCGCCG GCGAAGCCCGCCGCGCGGGGCGCGCGTGCGGCGGGGGCGGCAGGCTCAGCGGGTTCGGCCGGCGAGTAG
Upstream 100 bases:
>100_bases CGCTGGCGCCAGTGCCAATGCCGGTGCCGGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCGGTGCCAGTGCCAGTG CCAGTGCCAGTGCCGGCGCG
Downstream 100 bases:
>100_bases GGGCTGGCGGCGAGACCGGCCGGGAGCGCGTGCGCGCTCGTTGTCTCGTTCGCGGCGGCCGGGGCGGGGCGACGTACGCG GGGTGGGCGGGGACGCCGTT
Product: putative hydrolase
Products: NA
Alternate protein names: Alpha/Beta Hydrolase Fold Protein; Hydrolase; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase; Hydrolase Alpha/Beta Fold Family; Hydrolytic; Hydrolase Alpha/Beta Fold Family Protein; 2-Hydroxy-6-Oxo-6-Phenylhexa-2 4-Dienoate Hydrolase; Lipase; Alpha/Beta Family Hydrolase; Alpha/Beta Hydrolase Fold-Containing Protein; 2-Hydroxymuconate-Semialdehyde Hydrolase; Non-Heme Chloroperoxidase; Proline Iminopeptidase; Transmembrane Protein; Esterase; 3-Oxoadipate Enol-Lactonase; 2-Hydroxymuconate Semialdehyde Hydrolase; Hydrolase Or Acyltransferase Family Protein; Secreted Alpha/Beta Fold Hydrolase; 2-Hydroxy-6-Ketonona-2 4-Dienedioic Acid Hydrolase; Epoxide Hydrolase; Epoxide Hydrolase-Like Protein
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MSAAARAKADGPAYGAELEGFAYAYPVHRYAFTSQRETLQMAYLDVRPERANGRTVVLLHGKNFCAGTWEQTIEVFAKAG YRVVAPDQIGFCKSTKPLRYQYSFQQLAHNTHALLESIGVKEATVVGHSTGGMLAVRYALMYPRDTQQLVLVNPIGLEDW KALGVPALSVDYWYARELKTSADVIRRYEQRTYYAGEWSPAYERWVQMLAGLYRGPGRDVVAWNSALVYDMIFTQPVLYE FGAIRVPTLLLIGDKDTTAIGKDVAPPDVHAKLGRYPALAKRTQAAIPGAVLYEFPALGHAPQIQDPATFHKALLDGLAP AKPAARGARAAGAAGSAGSAGE
Sequences:
>Translated_342_residues MSAAARAKADGPAYGAELEGFAYAYPVHRYAFTSQRETLQMAYLDVRPERANGRTVVLLHGKNFCAGTWEQTIEVFAKAG YRVVAPDQIGFCKSTKPLRYQYSFQQLAHNTHALLESIGVKEATVVGHSTGGMLAVRYALMYPRDTQQLVLVNPIGLEDW KALGVPALSVDYWYARELKTSADVIRRYEQRTYYAGEWSPAYERWVQMLAGLYRGPGRDVVAWNSALVYDMIFTQPVLYE FGAIRVPTLLLIGDKDTTAIGKDVAPPDVHAKLGRYPALAKRTQAAIPGAVLYEFPALGHAPQIQDPATFHKALLDGLAP AKPAARGARAAGAAGSAGSAGE >Mature_341_residues SAAARAKADGPAYGAELEGFAYAYPVHRYAFTSQRETLQMAYLDVRPERANGRTVVLLHGKNFCAGTWEQTIEVFAKAGY RVVAPDQIGFCKSTKPLRYQYSFQQLAHNTHALLESIGVKEATVVGHSTGGMLAVRYALMYPRDTQQLVLVNPIGLEDWK ALGVPALSVDYWYARELKTSADVIRRYEQRTYYAGEWSPAYERWVQMLAGLYRGPGRDVVAWNSALVYDMIFTQPVLYEF GAIRVPTLLLIGDKDTTAIGKDVAPPDVHAKLGRYPALAKRTQAAIPGAVLYEFPALGHAPQIQDPATFHKALLDGLAPA KPAARGARAAGAAGSAGSAGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37325; Mature: 37194
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAAARAKADGPAYGAELEGFAYAYPVHRYAFTSQRETLQMAYLDVRPERANGRTVVLLH CCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCHHHEEEEEEEECCCCCCCCEEEEEC GKNFCAGTWEQTIEVFAKAGYRVVAPDQIGFCKSTKPLRYQYSFQQLAHNTHALLESIGV CCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCC KEATVVGHSTGGMLAVRYALMYPRDTQQLVLVNPIGLEDWKALGVPALSVDYWYARELKT CEEEEEECCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHCCCEEEEHHHHHHHHHH SADVIRRYEQRTYYAGEWSPAYERWVQMLAGLYRGPGRDVVAWNSALVYDMIFTQPVLYE HHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCHHHHH FGAIRVPTLLLIGDKDTTAIGKDVAPPDVHAKLGRYPALAKRTQAAIPGAVLYEFPALGH CCCEEECEEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCHHHHHCCCCCC APQIQDPATFHKALLDGLAPAKPAARGARAAGAAGSAGSAGE CCCCCCHHHHHHHHHHCCCCCCCHHCCCHHCCCCCCCCCCCC >Mature Secondary Structure SAAARAKADGPAYGAELEGFAYAYPVHRYAFTSQRETLQMAYLDVRPERANGRTVVLLH CCCCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCHHHEEEEEEEECCCCCCCCEEEEEC GKNFCAGTWEQTIEVFAKAGYRVVAPDQIGFCKSTKPLRYQYSFQQLAHNTHALLESIGV CCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCC KEATVVGHSTGGMLAVRYALMYPRDTQQLVLVNPIGLEDWKALGVPALSVDYWYARELKT CEEEEEECCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHCCCEEEEHHHHHHHHHH SADVIRRYEQRTYYAGEWSPAYERWVQMLAGLYRGPGRDVVAWNSALVYDMIFTQPVLYE HHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCHHHHH FGAIRVPTLLLIGDKDTTAIGKDVAPPDVHAKLGRYPALAKRTQAAIPGAVLYEFPALGH CCCEEECEEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCHHHHHCCCCCC APQIQDPATFHKALLDGLAPAKPAARGARAAGAAGSAGSAGE CCCCCCHHHHHHHHHHCCCCCCCHHCCCHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA