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The map label for this gene is yciO [H]

Identifier: 53719872

GI number: 53719872

Start: 2727189

End: 2727818

Strand: Reverse

Name: yciO [H]

Synonym: BPSL2262

Alternate gene names: 53719872

Gene position: 2727818-2727189 (Counterclockwise)

Preceding gene: 53719873

Following gene: 53719871

Centisome position: 66.95

GC content: 69.52

Gene sequence:

>630_bases
ATGTCCCAATTCTTCAGGATTCACCCGGATGATCCGCAGCCGCGCCTTGTCAGGCAGGCGGCCGAAATCGTGCGTGGCGG
CGGCGTGATCGCGCTGCCGACCGATTCGAGCTACGCGCTCGCGTGCCATCTGGACGACAAGGATGCGGTCGAGCGCGTGC
GCCGCATCCGCGGGCTCGACGACAAGCAGCACCTGTCGCTGCTCGTGCGCGATCTGTCCGAGCTCGCGACGTTCGCGATG
GTCGACAACCGGCAATACCGGCTGATCAAATCGGTGACGCCGGGGCCATACGTGTTCATCCTGCAGGCGACGAAGGAGGT
GCCGCGGCGGCTGTCGCATCCGTCGCGCAAGACGATCGGCCTGCGCGTGCCCGCGCACGCGATCACGCTCGCGCTGCTCG
AGGCGCTCGGCCAGCCGCTGCTCGGCACGACGCTGATCCTGCCGCCCGACGACGAGCCGCTCAACGATCCGGAGGAAATC
CGCGCGCGTCTCGAAAAGCAGGTCGACCTCGTGATCGACGGCGGCGCGTGCCCGCGCGAGCCGTCGACGGTGATCGACCT
GACGGGCGACGAGCCGCAGCTCGTGCGGGCGGGGCGCGGTCCGCTCGAGCCGTTCGGCCTCGCCGCGTGA

Upstream 100 bases:

>100_bases
TCCGATCTCAAACCCGTCTGGGAGCGCTGGCTGTAGCGGCGTTTGCCGGCGGCACCTCCGGCGCGCGGGCTCGCACGCGC
CGATCCATACCTTTGTCCCC

Downstream 100 bases:

>100_bases
GCGCCGCCGCGCCGTCCCGGCGCACCGGAGCGGCCGCCGTTTCGGTCCGCACGCATGCGCGCCGTTCGCGCGTTTGCCGC
TTGTTACAATAACGCGCTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MSQFFRIHPDDPQPRLVRQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDDKQHLSLLVRDLSELATFAM
VDNRQYRLIKSVTPGPYVFILQATKEVPRRLSHPSRKTIGLRVPAHAITLALLEALGQPLLGTTLILPPDDEPLNDPEEI
RARLEKQVDLVIDGGACPREPSTVIDLTGDEPQLVRAGRGPLEPFGLAA

Sequences:

>Translated_209_residues
MSQFFRIHPDDPQPRLVRQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDDKQHLSLLVRDLSELATFAM
VDNRQYRLIKSVTPGPYVFILQATKEVPRRLSHPSRKTIGLRVPAHAITLALLEALGQPLLGTTLILPPDDEPLNDPEEI
RARLEKQVDLVIDGGACPREPSTVIDLTGDEPQLVRAGRGPLEPFGLAA
>Mature_208_residues
SQFFRIHPDDPQPRLVRQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLDDKQHLSLLVRDLSELATFAMV
DNRQYRLIKSVTPGPYVFILQATKEVPRRLSHPSRKTIGLRVPAHAITLALLEALGQPLLGTTLILPPDDEPLNDPEEIR
ARLEKQVDLVIDGGACPREPSTVIDLTGDEPQLVRAGRGPLEPFGLAA

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=60, Blast_Score=253, Evalue=6e-69,
Organism=Drosophila melanogaster, GI78707274, Length=195, Percent_Identity=29.7435897435897, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23023; Mature: 22892

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFRIHPDDPQPRLVRQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLD
CCCCEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHCCC
DKQHLSLLVRDLSELATFAMVDNRQYRLIKSVTPGPYVFILQATKEVPRRLSHPSRKTIG
CHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHCCCCCCEEE
LRVPAHAITLALLEALGQPLLGTTLILPPDDEPLNDPEEIRARLEKQVDLVIDGGACPRE
EECCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCEEEEEECCCCCCC
PSTVIDLTGDEPQLVRAGRGPLEPFGLAA
CCEEEEECCCCHHHEECCCCCCCCCCCCC
>Mature Secondary Structure 
SQFFRIHPDDPQPRLVRQAAEIVRGGGVIALPTDSSYALACHLDDKDAVERVRRIRGLD
CCCEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHCCC
DKQHLSLLVRDLSELATFAMVDNRQYRLIKSVTPGPYVFILQATKEVPRRLSHPSRKTIG
CHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHCCCCCCEEE
LRVPAHAITLALLEALGQPLLGTTLILPPDDEPLNDPEEIRARLEKQVDLVIDGGACPRE
EECCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCEEEEEECCCCCCC
PSTVIDLTGDEPQLVRAGRGPLEPFGLAA
CCEEEEECCCCHHHEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]