Click here to switch to the map view.

The map label for this gene is ywhC [H]

Identifier: 53719871

GI number: 53719871

Start: 2726425

End: 2727090

Strand: Reverse

Name: ywhC [H]

Synonym: BPSL2261

Alternate gene names: 53719871

Gene position: 2727090-2726425 (Counterclockwise)

Preceding gene: 53719872

Following gene: 53719870

Centisome position: 66.93

GC content: 66.37

Gene sequence:

>666_bases
ATGGATGCTTCTTCCCTGATACAGACGATTGCCGTCTACGCACTGCCCGTGGTCTTCGCGATCACGCTGCACGAGGCCGC
CCACGGCTATGTCGCTCGCCTGCTGGGCGACAACACCGCGTACATGATGGGCCGCGTGTCGTTCAACCCGATGCGCCACA
TCGATCCGTTCGGCACGATCGTGATTCCGCTCGTGCTGTACTTCCTCACGAGCGGCGCGTTCCTGTTCGGCTACGCGAGG
CCTGTGCCCGTCACGTTCCGCAATCTGCGCAATCCTCGCTGGGGAAGCCTCTGGGTCGTGCTCGCGGGGCCGGGCTGCAA
TTTCGTCCAGGCGCTGATCTGGGGCTTCGTGAGCATCGGCCTCGCCGCGCTGGCGGTCGACGAGCCGTTCTTCACGCGCA
TGGCCGGAGCGGGCGTCGGCGTGAATCTCGTGCTCGCGGTGCTGAACCTCTTTCCGCTGCCGCCGCTCGACGGCGGGCGC
GTGCTCGCGGCGCTGCTGCCGCCGAAGCAATCGATCGCGCTATCTCGGCTCGAGCCGTACGGCTTCTTCATCGTGCTCGC
GCTCGTCGCGACGGGCCTGCTGACGAAACTCTGGCTGCGGCCGCTGGTGGGCGCCGGCTATGCCGTCGTGACGGCCATCC
TGACTCCTTTCGCCTCGCTCTTCTAA

Upstream 100 bases:

>100_bases
GAGCGCCGCCGCGCCGTCCCGGCGCACCGGAGCGGCCGCCGTTTCGGTCCGCACGCATGCGCGCCGTTCGCGCGTTTGCC
GCTTGTTACAATAACGCGCT

Downstream 100 bases:

>100_bases
CGACAATCATGTTCCCAGACCGTATCTTTTCCGGCATGCGACCCACGGGGTCGCTCCATCTCGGCCACTATCACGGCGTG
CTGAAGAACTGGGTCAAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MDASSLIQTIAVYALPVVFAITLHEAAHGYVARLLGDNTAYMMGRVSFNPMRHIDPFGTIVIPLVLYFLTSGAFLFGYAR
PVPVTFRNLRNPRWGSLWVVLAGPGCNFVQALIWGFVSIGLAALAVDEPFFTRMAGAGVGVNLVLAVLNLFPLPPLDGGR
VLAALLPPKQSIALSRLEPYGFFIVLALVATGLLTKLWLRPLVGAGYAVVTAILTPFASLF

Sequences:

>Translated_221_residues
MDASSLIQTIAVYALPVVFAITLHEAAHGYVARLLGDNTAYMMGRVSFNPMRHIDPFGTIVIPLVLYFLTSGAFLFGYAR
PVPVTFRNLRNPRWGSLWVVLAGPGCNFVQALIWGFVSIGLAALAVDEPFFTRMAGAGVGVNLVLAVLNLFPLPPLDGGR
VLAALLPPKQSIALSRLEPYGFFIVLALVATGLLTKLWLRPLVGAGYAVVTAILTPFASLF
>Mature_221_residues
MDASSLIQTIAVYALPVVFAITLHEAAHGYVARLLGDNTAYMMGRVSFNPMRHIDPFGTIVIPLVLYFLTSGAFLFGYAR
PVPVTFRNLRNPRWGSLWVVLAGPGCNFVQALIWGFVSIGLAALAVDEPFFTRMAGAGVGVNLVLAVLNLFPLPPLDGGR
VLAALLPPKQSIALSRLEPYGFFIVLALVATGLLTKLWLRPLVGAGYAVVTAILTPFASLF

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 23743; Mature: 23743

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDASSLIQTIAVYALPVVFAITLHEAAHGYVARLLGDNTAYMMGRVSFNPMRHIDPFGTI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHCCCCHHHH
VIPLVLYFLTSGAFLFGYARPVPVTFRNLRNPRWGSLWVVLAGPGCNFVQALIWGFVSIG
HHHHHHHHHHCCHHEECCCCCCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
LAALAVDEPFFTRMAGAGVGVNLVLAVLNLFPLPPLDGGRVLAALLPPKQSIALSRLEPY
HHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHCCHH
GFFIVLALVATGLLTKLWLRPLVGAGYAVVTAILTPFASLF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDASSLIQTIAVYALPVVFAITLHEAAHGYVARLLGDNTAYMMGRVSFNPMRHIDPFGTI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHCCCCHHHH
VIPLVLYFLTSGAFLFGYARPVPVTFRNLRNPRWGSLWVVLAGPGCNFVQALIWGFVSIG
HHHHHHHHHHCCHHEECCCCCCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
LAALAVDEPFFTRMAGAGVGVNLVLAVLNLFPLPPLDGGRVLAALLPPKQSIALSRLEPY
HHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHCCHH
GFFIVLALVATGLLTKLWLRPLVGAGYAVVTAILTPFASLF
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]