| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is yjiJ [H]
Identifier: 53719619
GI number: 53719619
Start: 2392284
End: 2393978
Strand: Reverse
Name: yjiJ [H]
Synonym: BPSL2007
Alternate gene names: 53719619
Gene position: 2393978-2392284 (Counterclockwise)
Preceding gene: 53719621
Following gene: 53719618
Centisome position: 58.75
GC content: 73.57
Gene sequence:
>1695_bases ATGAGCTCTCTACCTTCTTTCCTCGCTGCGGCTAGTGGGCCGCGCGGTCCGTCGCACGATCAACGCGCCGCGTGCCGCGC GGCGCTTGCGGGCGCGGTGGCGCTCGCGGTGGCGCTCGGCGTCGGGCGTTTTGCCTTCACGCCGCTGCTGCCGCTGATGC TCGCGGGCGGCGAGCTCGACATCCGGCACGGCGGCTGGCTCGCGTCCGCGAATTACGCGGGCTATTTCGTCGGCGCGATG ACTTGCGCGCGCATCGCCGTCGATCCGGCGCGGATGGTGCGCGCCGGCTTGGCGGCGACGGTCTTGCTGACGTTTGCGAT GGGACTCGCGAGCCCGTTCTGGGTATGGGCGCTCGTGCGCTTCGTCGGCGGCGCGGTGAGCGCATGGACGTTCGTGTTCG CGTCGCAGTGGGGCCTGCGGCGCGTCGTCGAGCACGGCGCGCCCGCATGGGGCGGCGTCATCTACACGGGGCCGGGGATC GGGATCGTCGCGACCGGGCTGATCGGCTTCGCGCTCGCGGGGCGTCACGCGGCGCTCGGGTGGATCGGGTTCGCCGCGGC GTCGGCGGTGCTGACGGCGTTCGTGTGGCGCGCATTCGGGGCCGCGGGCGCCGGCACGGACGGCGGGCAATCGCGCGGCG GCGCGAAGCGAGCGGGCGATGGCGTCGGCGTTGCGGATGCCGCTGGTCGGGCCGGCGAGCGGCTAGCGGCCGGAGCGGCA GAAGGGGCAGGAGCGGTGGCCGACGCGGTCAGCGCGGCTAATGTGGCCGACACGGCCGACACGGCCGACACGGCCAACAC GGCCAACACGGCCAACACGGCCAACACGGCCAACACGGCCAACACGGCCAACACGGCCAACACGGCCAACACGGCCAACA CGGCCAACACGGCCAACACGGCCAACACGGCCAACACGGCCAACACGGCCAACACGGCCAACACGGCCAACACGGCCAAC TCAGCCAACTCAGCCAACTCAGCCAACTCAGCCAACTCAGCCAACTCAGCGACCGCGACAGCCGAAAGAAATTCCCCGGT GGCGGGCGTCGCCGGCCAGCACGGCGCGATGGCCGCGCCCGCCGCGCGCGCGCCGCACGTCGAGTCGGCCGCCGCCCGCC GCGACGCATTCTGGCTCGTGCTCCTCTACGGCTTGCCCGGCTTCGGCTACATCATCACCGCGACCTTCCTGCCGGTGATC GCCCGCGCCGCGCTGCCCGCGCATTCGCGGTGGCCCGATCTGTTCTGGCCGATGTTCGGCGCGGCGCTGATCGCCGGGGC GCTGCTCGGCGCGCGGCTACCGAGCGGCTGGGACAACCGGCTGCTGCTCGGTGCGTGCTGCGCGGTGCAGGCGCTCGGTG TCGCGCTCGGCATCGTCTGGCCGACGGCGCCCGGGTTCGCGCTCGGCAGCGCGCTCGTCGGCTTGCCGTTCACCGCGATC ACCTTGTTCGCGATGCGCGAGGCGCGCCGCCTGCGCGGCGAGCGGGCGGCGGGCCTGATGGGCTATGCGACCGCTTCATA CGGTGTCGGTCAGATCGCCGGGCCGCTCGCCGCCGCCCCGCTCGCCGCGCACGCGGGGTCGTTCTCGCCGGCGCTGTGGC TTGCGGCGACGATGCTGGCGGTGGGGGCGGCCGGATTCGCGGCCGTTGCGCTGCGCGCATGGCGCGCGAAGACGCGCGGC GGCGGAGTCGGGTAA
Upstream 100 bases:
>100_bases GAATGATCGGTCAAGCTAGCATCGAATCGACTTCGACCATGATCTTGACCGGCCGCGATGCTTCCGACCCGATGGCGTGG CCGCTTCGCCCCTCGAAACG
Downstream 100 bases:
>100_bases GCCGCCGGCCGGGCTCGAAGCATGGCGCGGCGCCGCAGCGGCCACGCGTCGGCGAGCGGCCGCTGCGGCGCGCGTTCGCG AGGCGCGTCGCCGGCTCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 564; Mature: 563
Protein sequence:
>564_residues MSSLPSFLAAASGPRGPSHDQRAACRAALAGAVALAVALGVGRFAFTPLLPLMLAGGELDIRHGGWLASANYAGYFVGAM TCARIAVDPARMVRAGLAATVLLTFAMGLASPFWVWALVRFVGGAVSAWTFVFASQWGLRRVVEHGAPAWGGVIYTGPGI GIVATGLIGFALAGRHAALGWIGFAAASAVLTAFVWRAFGAAGAGTDGGQSRGGAKRAGDGVGVADAAGRAGERLAAGAA EGAGAVADAVSAANVADTADTADTANTANTANTANTANTANTANTANTANTANTANTANTANTANTANTANTANTANTAN SANSANSANSANSANSATATAERNSPVAGVAGQHGAMAAPAARAPHVESAAARRDAFWLVLLYGLPGFGYIITATFLPVI ARAALPAHSRWPDLFWPMFGAALIAGALLGARLPSGWDNRLLLGACCAVQALGVALGIVWPTAPGFALGSALVGLPFTAI TLFAMREARRLRGERAAGLMGYATASYGVGQIAGPLAAAPLAAHAGSFSPALWLAATMLAVGAAGFAAVALRAWRAKTRG GGVG
Sequences:
>Translated_564_residues MSSLPSFLAAASGPRGPSHDQRAACRAALAGAVALAVALGVGRFAFTPLLPLMLAGGELDIRHGGWLASANYAGYFVGAM TCARIAVDPARMVRAGLAATVLLTFAMGLASPFWVWALVRFVGGAVSAWTFVFASQWGLRRVVEHGAPAWGGVIYTGPGI GIVATGLIGFALAGRHAALGWIGFAAASAVLTAFVWRAFGAAGAGTDGGQSRGGAKRAGDGVGVADAAGRAGERLAAGAA EGAGAVADAVSAANVADTADTADTANTANTANTANTANTANTANTANTANTANTANTANTANTANTANTANTANTANTAN SANSANSANSANSANSATATAERNSPVAGVAGQHGAMAAPAARAPHVESAAARRDAFWLVLLYGLPGFGYIITATFLPVI ARAALPAHSRWPDLFWPMFGAALIAGALLGARLPSGWDNRLLLGACCAVQALGVALGIVWPTAPGFALGSALVGLPFTAI TLFAMREARRLRGERAAGLMGYATASYGVGQIAGPLAAAPLAAHAGSFSPALWLAATMLAVGAAGFAAVALRAWRAKTRG GGVG >Mature_563_residues SSLPSFLAAASGPRGPSHDQRAACRAALAGAVALAVALGVGRFAFTPLLPLMLAGGELDIRHGGWLASANYAGYFVGAMT CARIAVDPARMVRAGLAATVLLTFAMGLASPFWVWALVRFVGGAVSAWTFVFASQWGLRRVVEHGAPAWGGVIYTGPGIG IVATGLIGFALAGRHAALGWIGFAAASAVLTAFVWRAFGAAGAGTDGGQSRGGAKRAGDGVGVADAAGRAGERLAAGAAE GAGAVADAVSAANVADTADTADTANTANTANTANTANTANTANTANTANTANTANTANTANTANTANTANTANTANTANS ANSANSANSANSANSATATAERNSPVAGVAGQHGAMAAPAARAPHVESAAARRDAFWLVLLYGLPGFGYIITATFLPVIA RAALPAHSRWPDLFWPMFGAALIAGALLGARLPSGWDNRLLLGACCAVQALGVALGIVWPTAPGFALGSALVGLPFTAIT LFAMREARRLRGERAAGLMGYATASYGVGQIAGPLAAAPLAAHAGSFSPALWLAATMLAVGAAGFAAVALRAWRAKTRGG GVG
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790788, Length=171, Percent_Identity=32.7485380116959, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010645 - InterPro: IPR016196 [H]
Pfam domain/function: PF06779 DUF1228 [H]
EC number: NA
Molecular weight: Translated: 55942; Mature: 55811
Theoretical pI: Translated: 11.11; Mature: 11.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSLPSFLAAASGPRGPSHDQRAACRAALAGAVALAVALGVGRFAFTPLLPLMLAGGELD CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE IRHGGWLASANYAGYFVGAMTCARIAVDPARMVRAGLAATVLLTFAMGLASPFWVWALVR ECCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH FVGGAVSAWTFVFASQWGLRRVVEHGAPAWGGVIYTGPGIGIVATGLIGFALAGRHAALG HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHH WIGFAAASAVLTAFVWRAFGAAGAGTDGGQSRGGAKRAGDGVGVADAAGRAGERLAAGAA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHCCCC EGAGAVADAVSAANVADTADTADTANTANTANTANTANTANTANTANTANTANTANTANT CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ANTANTANTANTANTANTANSANSANSANSANSANSATATAERNSPVAGVAGQHGAMAAP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AARAPHVESAAARRDAFWLVLLYGLPGFGYIITATFLPVIARAALPAHSRWPDLFWPMFG CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH AALIAGALLGARLPSGWDNRLLLGACCAVQALGVALGIVWPTAPGFALGSALVGLPFTAI HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHH TLFAMREARRLRGERAAGLMGYATASYGVGQIAGPLAAAPLAAHAGSFSPALWLAATMLA HHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH VGAAGFAAVALRAWRAKTRGGGVG HHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SSLPSFLAAASGPRGPSHDQRAACRAALAGAVALAVALGVGRFAFTPLLPLMLAGGELD CCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE IRHGGWLASANYAGYFVGAMTCARIAVDPARMVRAGLAATVLLTFAMGLASPFWVWALVR ECCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH FVGGAVSAWTFVFASQWGLRRVVEHGAPAWGGVIYTGPGIGIVATGLIGFALAGRHAALG HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHH WIGFAAASAVLTAFVWRAFGAAGAGTDGGQSRGGAKRAGDGVGVADAAGRAGERLAAGAA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHCCCC EGAGAVADAVSAANVADTADTADTANTANTANTANTANTANTANTANTANTANTANTANT CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ANTANTANTANTANTANTANSANSANSANSANSANSATATAERNSPVAGVAGQHGAMAAP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AARAPHVESAAARRDAFWLVLLYGLPGFGYIITATFLPVIARAALPAHSRWPDLFWPMFG CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH AALIAGALLGARLPSGWDNRLLLGACCAVQALGVALGIVWPTAPGFALGSALVGLPFTAI HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHH TLFAMREARRLRGERAAGLMGYATASYGVGQIAGPLAAAPLAAHAGSFSPALWLAATMLA HHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH VGAAGFAAVALRAWRAKTRGGGVG HHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]