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The map label for this gene is rbfA [H]

Identifier: 53719531

GI number: 53719531

Start: 2284880

End: 2285248

Strand: Reverse

Name: rbfA [H]

Synonym: BPSL1917

Alternate gene names: 53719531

Gene position: 2285248-2284880 (Counterclockwise)

Preceding gene: 53719532

Following gene: 53719530

Centisome position: 56.09

GC content: 60.7

Gene sequence:

>369_bases
ATGTCGAAAAAACGCAGTTCTCCCAATCGCAACGTGCAGATCGCCGATCAGATCCAGCGCGATCTGTCGGAACTCATCAT
GCGCGAGGTCAAGGATCCGCGCATCGGGATCGTGACGATCCAGTCGGTCGAGCTCACGCCCGACTACGCGCACGCAAAGG
TCTATTTCACCGCGCTCACGGGCACGCCGGCGGACACGCAGGAAGCGCTCAACCATGCGGCCGGCCATTTGCACAATCTG
CTCTTCAAGCGCCTGCACATTCACACGGTGCCGACGCTGCATTTCCATTACGACCAGACGATCGAGAAGGCCGTCGCGAT
GTCGCGCCTCATCGACGAGGCGAACGCGACGCGCGCGAAGGACGATTGA

Upstream 100 bases:

>100_bases
GCGTGACGGCTTGAATGGGCGGGTCGGGCTTGGGCCCGTCCCGCCCATTTTCATGAACGGGGTCGCGCGCTTCGCCGATC
AACCGGATGGCGGATTTATC

Downstream 100 bases:

>100_bases
GCATCGCACGAGCCTTGGTGCAGACCATGACGACTGTTTCGCCCCGCCCCCGGATGGCCCGCCGCGCGCTCGATGGCGTG
CTGCTGCTCGACAAGCCGGT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MSKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGTPADTQEALNHAAGHLHNL
LFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAKDD

Sequences:

>Translated_122_residues
MSKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGTPADTQEALNHAAGHLHNL
LFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAKDD
>Mature_121_residues
SKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALTGTPADTQEALNHAAGHLHNLL
FKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAKDD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=116, Percent_Identity=35.3448275862069, Blast_Score=80, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13808; Mature: 13677

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALT
CCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
GTPADTQEALNHAAGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCC
DD
CC
>Mature Secondary Structure 
SKKRSSPNRNVQIADQIQRDLSELIMREVKDPRIGIVTIQSVELTPDYAHAKVYFTALT
CCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEEEEEC
GTPADTQEALNHAAGHLHNLLFKRLHIHTVPTLHFHYDQTIEKAVAMSRLIDEANATRAK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCC
DD
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA