| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is 53719510
Identifier: 53719510
GI number: 53719510
Start: 2258467
End: 2259366
Strand: Reverse
Name: 53719510
Synonym: BPSL1896
Alternate gene names: NA
Gene position: 2259366-2258467 (Counterclockwise)
Preceding gene: 53719511
Following gene: 53719509
Centisome position: 55.45
GC content: 74.33
Gene sequence:
>900_bases ATGGCCAATCATCTGACCAAGATCATCGCGGGGCTGCTGATCGGGATCGCGATCCTGCTCGGCATTTACGCATGGCTGCT CGGGCGCAAGCCGGCGCCTGTCGCGCCGGGCGCCGCGCCCGCCGTGGCGACGGCGATGGTGCCCGTCGTCGTCGCGGCGC GCGCGCTGCCCGCCGGGCAGCCGATTCCCGCCGATGCGCTGAAGGTGCAGCAGACGCCGACGCCGATCGCCGGCGCCTTC CCGAATCCGATGCTCGTGACGGGCCGCATCCCGGCGAGCGACATCGGCGCGCAGGCGCCGGTGCTCGAGAGCGAGCTGAT GTCGGGCCTCGCCGACCAGATCGCGCCCGGCGAGCGTGCCGTCGCGATCAAGGTCGACGATACGAACGCGGTCGGCAACC GGCTGCGTCCCGGCAATTTCGTCGACGTGTTCGTGAACCTGAAGCGCGAAGGCGGCTTCGGTGCGACCGGCTCCGAGATC GCGCAGACCCAGGCGCGGCTGCTGCTGTCGCGGGTGCGCGTGCTGTCGTTCGGCGATGCGACGGTGGAGCGCGACGGCAC GCCGGGCCCGACGGGCGCGGGCGCGCGCACCGCGGTGCTCGCCGTGCCGACCGCGCAGGTCGACGCGCTCACGCTCGCCG AAGCGAGCGGGCGGCTCGTGCTCGCGCTGCGCAGCCCGCGCGACGAAGACATCGCCGCGCAGACGGTGGCGATCCGCGCG CCGGCCGGCGCCGGGCCGTCGAATCAGGCGGCGACGGGGCTCGTGCTGAGCGAACTGTCGGGCAGCGGGGCGCCCGCGCA GGCGCCGCGCGCGGCTCCGACGCGAGTGACGGCCGCGCCGCATGCGGCGGGCAGCATCGAAGTGATCCGGGGAGGGCGAG CCGAGACGCTCGCCTATTGA
Upstream 100 bases:
>100_bases AACCCGACCAACATCATATGAAGTACCCGAGCGACTAGGCCGCAGCGGCGCGCCGCCGGTTTTCCCCAACGTCATTCTCG CTGTTGCACTGATAACAACC
Downstream 100 bases:
>100_bases TCGACAAGCGGTTTCGAACAGTGACGGCAGGGAGAGGGCCGGCTCGCGCCGGTCTCCGACACGATGAAAAATAAACTGAT TGCATGGGCGGTGGCGTTCG
Product: putative membrane fimbriae assembly protein
Products: NA
Alternate protein names: Flp Pilus Assembly CpaB; Flp Pilus Assembly Protein; CpaB Family Flp Pilus Assembly Protein; Pilus Assembly Protein; Flp Pilus Assembly; Pilus Assembly Protein Cpab; Flp Type Pilus Assembly Protein; Signal Peptide Protein CpaB Like Protein; CpaB Pilus Assembly Protein; Signal Peptide Protein; Signal Peptide Protein CpaB Like; Transmembrane Fimbriae Assembly Protein; SAF Domain-Containing Protein
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MANHLTKIIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQTPTPIAGAF PNPMLVTGRIPASDIGAQAPVLESELMSGLADQIAPGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEI AQTQARLLLSRVRVLSFGDATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIAAQTVAIRA PAGAGPSNQAATGLVLSELSGSGAPAQAPRAAPTRVTAAPHAAGSIEVIRGGRAETLAY
Sequences:
>Translated_299_residues MANHLTKIIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQTPTPIAGAF PNPMLVTGRIPASDIGAQAPVLESELMSGLADQIAPGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEI AQTQARLLLSRVRVLSFGDATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIAAQTVAIRA PAGAGPSNQAATGLVLSELSGSGAPAQAPRAAPTRVTAAPHAAGSIEVIRGGRAETLAY >Mature_298_residues ANHLTKIIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQTPTPIAGAFP NPMLVTGRIPASDIGAQAPVLESELMSGLADQIAPGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIA QTQARLLLSRVRVLSFGDATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIAAQTVAIRAP AGAGPSNQAATGLVLSELSGSGAPAQAPRAAPTRVTAAPHAAGSIEVIRGGRAETLAY
Specific function: Unknown
COG id: COG3745
COG function: function code U; Flp pilus assembly protein CpaB
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30048; Mature: 29917
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANHLTKIIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQ CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC PIPADALKVQQTPTPIAGAFPNPMLVTGRIPASDIGAQAPVLESELMSGLADQIAPGERA CCCHHHEEECCCCCCCCCCCCCCEEEECCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCEE VAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGDA EEEEECCCHHHCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC TVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIAAQTVAIRA EEECCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCEEEEECCCCCCCHHEEEEEEEC PAGAGPSNQAATGLVLSELSGSGAPAQAPRAAPTRVTAAPHAAGSIEVIRGGRAETLAY CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCHHCCC >Mature Secondary Structure ANHLTKIIAGLLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQ CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC PIPADALKVQQTPTPIAGAFPNPMLVTGRIPASDIGAQAPVLESELMSGLADQIAPGERA CCCHHHEEECCCCCCCCCCCCCCEEEECCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCEE VAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGDA EEEEECCCHHHCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC TVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIAAQTVAIRA EEECCCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCCEEEEECCCCCCCHHEEEEEEEC PAGAGPSNQAATGLVLSELSGSGAPAQAPRAAPTRVTAAPHAAGSIEVIRGGRAETLAY CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEECCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA