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The map label for this gene is cafA [H]

Identifier: 53718794

GI number: 53718794

Start: 1337638

End: 1339104

Strand: Reverse

Name: cafA [H]

Synonym: BPSL1158

Alternate gene names: 53718794

Gene position: 1339104-1337638 (Counterclockwise)

Preceding gene: 53718795

Following gene: 53718793

Centisome position: 32.87

GC content: 65.58

Gene sequence:

>1467_bases
ATGAACGAAGAGATCCTGATCAACATCACGCCGCAGGAAACGCGGGTCGCGCTCGTCCAACAAGGCGCGGTGCAGGAGCT
TCACGTCGAGCGCACGCTGTCGCGCGGACGCGTCGGCAACGTCTATCTCGGCAAGGTCGTGCGCGTGCTGCCCGGCATGC
AGTCGGCGTTCATCGACATCGGGCTCGAGCGCGCGGCGTTCCTGCACGTCGCCGACATCTGGCAGCCGCGCGCGGGCGAC
GCGCCCGCCGCCGCGACGCACCAGCCGATCGAGAAAATCGTGTTCGAGGGCCAGACGCTGATGGTCCAGGTGATCAAGGA
CCCGATCGGCACGAAGGGCGCGCGGCTGTCGACGCAGATCAGCATCGCGGGGCGCACGCTCGTCTACCTGCCGCAGGAGC
CGCACATCGGCATCTCGCAGAAGATCGAGAGCGAGGCCGAGCGCGAGGCGGTGCGTGCGCGGCTGACCGCGGTGATCCCG
TCCGACGAGAAAGGCGGCTACATCGTGCGCACGATCGCCGAGGACGCGACCTCCGACGAGCTCGCCGCCGACGTCGCGTA
CCTGCGCAAGACGTGGGCGACGATCGTCGCGCAGGGCCAGCGCGTGCCGCCGACGAGCCTGCTGTATCAGGATCTCGATC
TCGCGCAGCGCGTGCTGCGCGATTTCGCGAACGACGACACGACGCGCATCCAGGTCGATTCGCGCGAGACACACCAGCGG
CTCGTCGAGTTCGCGGCCGAGTTCACGCCGGCCGTCAGCCCGAAGCTGCACCACTACACCGGCGAGCGGCCGCTGTTCGA
TCTGTACAACATCGAGGCCGAAATCCAGCGCGCGCTGTCGCGTCGCGTCGATCTGAAATCGGGCGGCTACCTGATGATCG
ATCAGACCGAGGCGATGACGACGATCGACGTGAACACGGGCGGCTACGTCGGCGCGCGCAATTTCGACGATACGATCTTC
AAGACGAATCTCGAGGCGGCGCACACGATCGCGCGGCAGCTTCGGCTGCGCAATCTCGGCGGGATCATCATCATCGATTT
CATCGACATGGAGAACGCCGAGCATCGCGACGCGGTGCTCGCCGAGCTGAAGAAGGCGCTCTCGCGCGACCGCACCCGCG
TGACGGTGAACACCTTCTCGCAGCTGGGGCTCGTCGAGATGACGCGCAAGCGCACGCGCGAATCGCTCGCGCACGTGCTG
TGCGAGCCTTGCCCGACGTGCCAGGGCAAGGGCCAGGTGAAGACATCGCGCACCGTGTGCTACGACATCCTGCGCGAGAT
CCTGCGCGAGTCGCGACAATTCAATCCGCGCGAGTTTCGCGTGATCGCGTCGCAGCAGGTGATCGACCTCTTTCTCGACG
AGGAGTCGCAGCATCTCGCGATGCTGATCGACTTCATCGGCAAGCCGGTGTCGTTGCAGGTCGAGTCGAACCTGAGCCAG
GAGCAGTACGACATTGTTTTGATGTAG

Upstream 100 bases:

>100_bases
TCGAGCGAATCGACGGCTCCCATTCAGGTATCATGGGTCTGCCCCTTTTTGAGACTGCGGCGCTGCTGCGCGCCGCGCAC
GTCGCCTTCTGAACCGCACC

Downstream 100 bases:

>100_bases
GGTTTACCCCATATCACCCCGTATCACCCGCCACCCCGGAAAGCCTTGCGCAGCAAGGCTCCGTCATTTTCAAAGAATTT
TCCCGTATCATCCCATCGCA

Product: ribonuclease G

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MNEEILINITPQETRVALVQQGAVQELHVERTLSRGRVGNVYLGKVVRVLPGMQSAFIDIGLERAAFLHVADIWQPRAGD
APAAATHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVIP
SDEKGGYIVRTIAEDATSDELAADVAYLRKTWATIVAQGQRVPPTSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETHQR
LVEFAAEFTPAVSPKLHHYTGERPLFDLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIF
KTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNTFSQLGLVEMTRKRTRESLAHVL
CEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIASQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQ
EQYDIVLM

Sequences:

>Translated_488_residues
MNEEILINITPQETRVALVQQGAVQELHVERTLSRGRVGNVYLGKVVRVLPGMQSAFIDIGLERAAFLHVADIWQPRAGD
APAAATHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVIP
SDEKGGYIVRTIAEDATSDELAADVAYLRKTWATIVAQGQRVPPTSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETHQR
LVEFAAEFTPAVSPKLHHYTGERPLFDLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIF
KTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNTFSQLGLVEMTRKRTRESLAHVL
CEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIASQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQ
EQYDIVLM
>Mature_488_residues
MNEEILINITPQETRVALVQQGAVQELHVERTLSRGRVGNVYLGKVVRVLPGMQSAFIDIGLERAAFLHVADIWQPRAGD
APAAATHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQISIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVIP
SDEKGGYIVRTIAEDATSDELAADVAYLRKTWATIVAQGQRVPPTSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETHQR
LVEFAAEFTPAVSPKLHHYTGERPLFDLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMTTIDVNTGGYVGARNFDDTIF
KTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVLAELKKALSRDRTRVTVNTFSQLGLVEMTRKRTRESLAHVL
CEPCPTCQGKGQVKTSRTVCYDILREILRESRQFNPREFRVIASQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQ
EQYDIVLM

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=493, Percent_Identity=55.9837728194726, Blast_Score=540, Evalue=1e-155,
Organism=Escherichia coli, GI1787325, Length=458, Percent_Identity=36.8995633187773, Blast_Score=277, Evalue=1e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 54790; Mature: 54790

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEEILINITPQETRVALVQQGAVQELHVERTLSRGRVGNVYLGKVVRVLPGMQSAFIDI
CCCCEEEEECCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHH
GLERAAFLHVADIWQPRAGDAPAAATHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQI
CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEE
SIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVIPSDEKGGYIVRTIAEDATSDE
EECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEECCCCCCHH
LAADVAYLRKTWATIVAQGQRVPPTSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETHQR
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
LVEFAAEFTPAVSPKLHHYTGERPLFDLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMT
HHHHHHHHCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCEEEEECCCCEE
TIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVL
EEEECCCCEECCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHH
AELKKALSRDRTRVTVNTFSQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVC
HHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
YDILREILRESRQFNPREFRVIASQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQ
HHHHHHHHHHHHCCCCHHEEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCC
EQYDIVLM
CCCCEEEC
>Mature Secondary Structure
MNEEILINITPQETRVALVQQGAVQELHVERTLSRGRVGNVYLGKVVRVLPGMQSAFIDI
CCCCEEEEECCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHH
GLERAAFLHVADIWQPRAGDAPAAATHQPIEKIVFEGQTLMVQVIKDPIGTKGARLSTQI
CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEE
SIAGRTLVYLPQEPHIGISQKIESEAEREAVRARLTAVIPSDEKGGYIVRTIAEDATSDE
EECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEECCCCCCHH
LAADVAYLRKTWATIVAQGQRVPPTSLLYQDLDLAQRVLRDFANDDTTRIQVDSRETHQR
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
LVEFAAEFTPAVSPKLHHYTGERPLFDLYNIEAEIQRALSRRVDLKSGGYLMIDQTEAMT
HHHHHHHHCCCCCCCHHCCCCCCCCHHHHCCHHHHHHHHHHCCCCCCCCEEEEECCCCEE
TIDVNTGGYVGARNFDDTIFKTNLEAAHTIARQLRLRNLGGIIIIDFIDMENAEHRDAVL
EEEECCCCEECCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHH
AELKKALSRDRTRVTVNTFSQLGLVEMTRKRTRESLAHVLCEPCPTCQGKGQVKTSRTVC
HHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
YDILREILRESRQFNPREFRVIASQQVIDLFLDEESQHLAMLIDFIGKPVSLQVESNLSQ
HHHHHHHHHHHHCCCCHHEEEEHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCC
EQYDIVLM
CCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]