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The map label for this gene is intA [H]

Identifier: 53718793

GI number: 53718793

Start: 1336223

End: 1337464

Strand: Reverse

Name: intA [H]

Synonym: BPSL1157

Alternate gene names: 53718793

Gene position: 1337464-1336223 (Counterclockwise)

Preceding gene: 53718794

Following gene: 53718792

Centisome position: 32.82

GC content: 60.95

Gene sequence:

>1242_bases
ATGCGGGTGGCAAAGCGCCAAACAAATCTACTTTCAGACATCGAGCTCAAGCACCTGGCGCGCGCCGGCTCTCCCGTCGC
AAAGTCGGACGGCGCCGGGCTCACGTTCACGCTCTCAGCCGCAGGCACGGCAACTTGGGTGCTGCGCTTCAGCCACGGCG
GACGGCGGCACGAGCTCACGCTCGGCAACTATCCTGACCTTACCCTGACTGCCGCCCGCAAGCTCGCCGCAGCGAAGCGT
GTCGAGGTACAACAGGGAATCAATCCGGCGGTCGAGAGGCGCAAGGAAAAGGCACGGAAAGACTGGAGTGTGCGGCAGCT
CATCGCAGACTATCGTGAGCGGGTCTTAGTGACGCTCGCAGACAGCACTCAGCGAAGCTACGGCCGAAATCTCGTACGTG
TTGAGCGTGGCATGGGCTCGCTGTCGGTGCGCGTCGTCAGTGCCGCCGATGTGGTTGCCGAGATCGAGCGCACAAAACTC
GGGTGGGTCGAAGCGTTCACGCTTTGGTGCGTGCTCAAAGCCATATTCAAGCACGCGGCCGGAAAGCGGTTGATCGACGC
CAATCCATGCGCCGGAATCATGCTGGAGGCAATCATCGGAAAGCGGCCCCCGGTGCGGCAGCGGCTGATGCTGACGCATG
AGGAGCTCTACGTGCTCATGAACGCGAGCATGCGTGACGTGAACCTGTATGCGGTGCGAATCGCGCTGGCAACGGGCGTG
CGTATCAGCGAACTCTACACGTCGCTGCGCGCGAACCTCCATCTCGATGAAGCCCGTTGGCATATTCCCGCGAGCAAGAC
AGGACCGACGATGGACATCCCGCTCGCGCCGATCGTGAGTGAGTGGTTTGAGCGCCTGCTCGACCTGGCCGGGACTTCGG
AGTACGTCCTGCCAGCTCGACTGAGCAATCGACTCGGCCGCCACGACGGCGACACGCACGTTTCGAAAGACGCGATTCGC
GAAGCGATCGATTACTGGATCGACAATCACAAGCCGCAGATTCGCCGGTTCACGCCGCACGATTTGCGGAGCACGATGAA
GAGCCATATGCGCAGGCTGGGCGTGTCCCGCGACATCTCCGAGATGTGCCTTAACCACAAGCTCGCTGGCGTAGAAGGGA
TCTACGACCAGTACACATATTGGGACGAAAGAAAGGCAGCACTCGACTTGTGGGCGGCCTATCTAGCTACGCGCATGCGC
AATGAAGAATGGAATGTAACGCCGATGAAGCGGTCGGCATGA

Upstream 100 bases:

>100_bases
AGAATTTTCCCGTATCATCCCATCGCAGTAAATCGCAACTTCAATTGGTAGCTAGATTGGTAGCTAGAGTCCGGAACAAT
GCGGGCTCAACTCAGGAGTA

Downstream 100 bases:

>100_bases
CGGTTTGCCGCGCCTAGTTCGACGGGACGAAAACCGGGTGCCCTACCCGGCTGGCGCGGCTCCTGAGTAGGGCTTTGCTA
CAGGGCAAGCAATGGTTATA

Product: putative phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MRVAKRQTNLLSDIELKHLARAGSPVAKSDGAGLTFTLSAAGTATWVLRFSHGGRRHELTLGNYPDLTLTAARKLAAAKR
VEVQQGINPAVERRKEKARKDWSVRQLIADYRERVLVTLADSTQRSYGRNLVRVERGMGSLSVRVVSAADVVAEIERTKL
GWVEAFTLWCVLKAIFKHAAGKRLIDANPCAGIMLEAIIGKRPPVRQRLMLTHEELYVLMNASMRDVNLYAVRIALATGV
RISELYTSLRANLHLDEARWHIPASKTGPTMDIPLAPIVSEWFERLLDLAGTSEYVLPARLSNRLGRHDGDTHVSKDAIR
EAIDYWIDNHKPQIRRFTPHDLRSTMKSHMRRLGVSRDISEMCLNHKLAGVEGIYDQYTYWDERKAALDLWAAYLATRMR
NEEWNVTPMKRSA

Sequences:

>Translated_413_residues
MRVAKRQTNLLSDIELKHLARAGSPVAKSDGAGLTFTLSAAGTATWVLRFSHGGRRHELTLGNYPDLTLTAARKLAAAKR
VEVQQGINPAVERRKEKARKDWSVRQLIADYRERVLVTLADSTQRSYGRNLVRVERGMGSLSVRVVSAADVVAEIERTKL
GWVEAFTLWCVLKAIFKHAAGKRLIDANPCAGIMLEAIIGKRPPVRQRLMLTHEELYVLMNASMRDVNLYAVRIALATGV
RISELYTSLRANLHLDEARWHIPASKTGPTMDIPLAPIVSEWFERLLDLAGTSEYVLPARLSNRLGRHDGDTHVSKDAIR
EAIDYWIDNHKPQIRRFTPHDLRSTMKSHMRRLGVSRDISEMCLNHKLAGVEGIYDQYTYWDERKAALDLWAAYLATRMR
NEEWNVTPMKRSA
>Mature_413_residues
MRVAKRQTNLLSDIELKHLARAGSPVAKSDGAGLTFTLSAAGTATWVLRFSHGGRRHELTLGNYPDLTLTAARKLAAAKR
VEVQQGINPAVERRKEKARKDWSVRQLIADYRERVLVTLADSTQRSYGRNLVRVERGMGSLSVRVVSAADVVAEIERTKL
GWVEAFTLWCVLKAIFKHAAGKRLIDANPCAGIMLEAIIGKRPPVRQRLMLTHEELYVLMNASMRDVNLYAVRIALATGV
RISELYTSLRANLHLDEARWHIPASKTGPTMDIPLAPIVSEWFERLLDLAGTSEYVLPARLSNRLGRHDGDTHVSKDAIR
EAIDYWIDNHKPQIRRFTPHDLRSTMKSHMRRLGVSRDISEMCLNHKLAGVEGIYDQYTYWDERKAALDLWAAYLATRMR
NEEWNVTPMKRSA

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=408, Percent_Identity=23.0392156862745, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI145693166, Length=372, Percent_Identity=25.5376344086022, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46765; Mature: 46765

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVAKRQTNLLSDIELKHLARAGSPVAKSDGAGLTFTLSAAGTATWVLRFSHGGRRHELT
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEEE
LGNYPDLTLTAARKLAAAKRVEVQQGINPAVERRKEKARKDWSVRQLIADYRERVLVTLA
ECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHEEEEEE
DSTQRSYGRNLVRVERGMGSLSVRVVSAADVVAEIERTKLGWVEAFTLWCVLKAIFKHAA
CHHHHHHCCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKRLIDANPCAGIMLEAIIGKRPPVRQRLMLTHEELYVLMNASMRDVNLYAVRIALATGV
CCCEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEECCCCCCCHHEEEEEHHHHCC
RISELYTSLRANLHLDEARWHIPASKTGPTMDIPLAPIVSEWFERLLDLAGTSEYVLPAR
HHHHHHHHHHHCCEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHH
LSNRLGRHDGDTHVSKDAIREAIDYWIDNHKPQIRRFTPHDLRSTMKSHMRRLGVSRDIS
HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHH
EMCLNHKLAGVEGIYDQYTYWDERKAALDLWAAYLATRMRNEEWNVTPMKRSA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRVAKRQTNLLSDIELKHLARAGSPVAKSDGAGLTFTLSAAGTATWVLRFSHGGRRHELT
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEEE
LGNYPDLTLTAARKLAAAKRVEVQQGINPAVERRKEKARKDWSVRQLIADYRERVLVTLA
ECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHEEEEEE
DSTQRSYGRNLVRVERGMGSLSVRVVSAADVVAEIERTKLGWVEAFTLWCVLKAIFKHAA
CHHHHHHCCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GKRLIDANPCAGIMLEAIIGKRPPVRQRLMLTHEELYVLMNASMRDVNLYAVRIALATGV
CCCEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEECCCCCCCHHEEEEEHHHHCC
RISELYTSLRANLHLDEARWHIPASKTGPTMDIPLAPIVSEWFERLLDLAGTSEYVLPAR
HHHHHHHHHHHCCEECCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHH
LSNRLGRHDGDTHVSKDAIREAIDYWIDNHKPQIRRFTPHDLRSTMKSHMRRLGVSRDIS
HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHH
EMCLNHKLAGVEGIYDQYTYWDERKAALDLWAAYLATRMRNEEWNVTPMKRSA
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7511583; 9278503; 9205837; 7524073 [H]