| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
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The map label for this gene is amiC [H]
Identifier: 53718498
GI number: 53718498
Start: 999015
End: 1000559
Strand: Reverse
Name: amiC [H]
Synonym: BPSL0859
Alternate gene names: 53718498
Gene position: 1000559-999015 (Counterclockwise)
Preceding gene: 53718499
Following gene: 53718496
Centisome position: 24.56
GC content: 68.93
Gene sequence:
>1545_bases ATGTTGATCAAACCGTTCCGCTCGATCGAATCGGCGGCCACCGCGACCCATAACTGGCGGCGCCGGCAGATCCTGCGCGC CGGCGCGTCGACGCTCGTGCTCGGGCTCGCGCTGCCGCGTCTCGCGCACGCGAGCTCGGTGCTCGGCGTGCGCGTATGGC CCGCGCGCGACTACACGCGCGTGACGATCGAATCGGATCAGCCGCTGCAGAACACCCAGCAACTGCTGCAGGGGCCGGAC CGGCTCGTCGTCGATCTGAACGGCCTCGAGCTCGACCAGGCGCTGCGCGACCTCGTCTCGAAGATCGCGCCGAACGATCC GCAGATCCAGTCGGTGCGCGTCGGCCAGTATCAGCCGCACGTGGTGCGGATGGTGTTCGACCTGAAGGGCTCGGTGAAGC CGCAGGTGTTCACGCTGCCGCCCGTCGGCACCTACAAGTACCGGCTCGTGTTCGACCTGTATCCGGCCGTCGCCCCCGAT CCGCTGTCCGATCTGATCGCGCAGACGGAGCGCAAGGAACAGCAGTTGAATGACACGCTGCGCGCGCAGCAGGCGCAGCC GCCCACGGCCGCGCTCAACGGCCCGACCGCCGCGCCGCCCGCCGCGACGGACAACAGCGATGCGTTCTTCCAGCGCTTCG CGCAGAACAACCCGCCGGCCGCGCATTCGGCGCGGCCGGCGCCCGCCAATCCGCCCGTCGCGCAAGCGAGCCCGCCCGCC GCACCGCCGCGGCCCGCGGTCAAGCCGCCGCCCGTCATCGCGCGCAGGAACGACGACGATTCGGGCGACACCGACACCTA CGCGTTCACCGCGCCGAAATCCGGCCGCGGCACCGTGCGCCTGCTGACGGTGGCGATCGATCCGGGCCACGGCGGCGAGG ATCCGGGCGCGATCGGCGGCGGCGGCACGTACGAAAAGCACATCGCGCTCGACATCGCAAAGAAGCTGCGCGCGAAGATC GACGCCGCGCCGAACATGCGCGCGATGATGACGCGCGACGCCGATTTCTTCGTGCCGCTGAACGTGCGCGTGCAGAAGGC GCGGCGCGTCGGCGCGGATCTGTTCGTGTCGATCCACGCGGATGCGTTCACGACGCCGTCGGCGCGCGGCTCGTCGGTGT TCGCGCTGTCGGACCACGGCGCGTCGAGCGCGGCCGCGCGCTGGCTCGCGAACAAGGAGAACTCCTCCGATCTGATCGGC GGGATCAACATCAAGACGCAGGACGTCGCGGTGAACCGCGCGCTGTTCGATATGTCGACGACCGCGCAGATCCGCGATTC GCTGCGCTACGGCAACTACGTGCTGCGCGAAGTCGGCGGCATCAACAAGCTGCACAAGGGCTCGGTCGAGCAGGCGGGGT TCGCGGTGCTCAAGGCGCCCGATATTCCGTCGATCCTCGTCGAGACCGCGTTCATCAGCAATCCGGACGAAGAGCGGCGC CTGAACGACGACGCGTATCGCGACCAGATGGCCGATGCGATCTTCCGCGGAATCAAGCGCTATTTCTCGGCGAACCCGCC GCTCGCGAAGAGCCGGATGACGTAA
Upstream 100 bases:
>100_bases TTGGCGTGCCGGATCTCGTGTTCTCGCTCGACGTGGCGGGCGAAGGCCGCCTGCTCACCGCCCGGGCGTACAGCGCATCA GGAAAGGCATGTCTCGAAAG
Downstream 100 bases:
>100_bases CGCGCCCCGCGCCGCGATCGCGTGCCGTGCTCGCGGAGCCTCGGGGCGCTCGGGGCGCTCGGCGGGCATGATGCGCCGCG CGGTTTTTGGGTCATTGCCG
Product: putative N-acetylmuramoyl-L-alanine amidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 514; Mature: 514
Protein sequence:
>514_residues MLIKPFRSIESAATATHNWRRRQILRAGASTLVLGLALPRLAHASSVLGVRVWPARDYTRVTIESDQPLQNTQQLLQGPD RLVVDLNGLELDQALRDLVSKIAPNDPQIQSVRVGQYQPHVVRMVFDLKGSVKPQVFTLPPVGTYKYRLVFDLYPAVAPD PLSDLIAQTERKEQQLNDTLRAQQAQPPTAALNGPTAAPPAATDNSDAFFQRFAQNNPPAAHSARPAPANPPVAQASPPA APPRPAVKPPPVIARRNDDDSGDTDTYAFTAPKSGRGTVRLLTVAIDPGHGGEDPGAIGGGGTYEKHIALDIAKKLRAKI DAAPNMRAMMTRDADFFVPLNVRVQKARRVGADLFVSIHADAFTTPSARGSSVFALSDHGASSAAARWLANKENSSDLIG GINIKTQDVAVNRALFDMSTTAQIRDSLRYGNYVLREVGGINKLHKGSVEQAGFAVLKAPDIPSILVETAFISNPDEERR LNDDAYRDQMADAIFRGIKRYFSANPPLAKSRMT
Sequences:
>Translated_514_residues MLIKPFRSIESAATATHNWRRRQILRAGASTLVLGLALPRLAHASSVLGVRVWPARDYTRVTIESDQPLQNTQQLLQGPD RLVVDLNGLELDQALRDLVSKIAPNDPQIQSVRVGQYQPHVVRMVFDLKGSVKPQVFTLPPVGTYKYRLVFDLYPAVAPD PLSDLIAQTERKEQQLNDTLRAQQAQPPTAALNGPTAAPPAATDNSDAFFQRFAQNNPPAAHSARPAPANPPVAQASPPA APPRPAVKPPPVIARRNDDDSGDTDTYAFTAPKSGRGTVRLLTVAIDPGHGGEDPGAIGGGGTYEKHIALDIAKKLRAKI DAAPNMRAMMTRDADFFVPLNVRVQKARRVGADLFVSIHADAFTTPSARGSSVFALSDHGASSAAARWLANKENSSDLIG GINIKTQDVAVNRALFDMSTTAQIRDSLRYGNYVLREVGGINKLHKGSVEQAGFAVLKAPDIPSILVETAFISNPDEERR LNDDAYRDQMADAIFRGIKRYFSANPPLAKSRMT >Mature_514_residues MLIKPFRSIESAATATHNWRRRQILRAGASTLVLGLALPRLAHASSVLGVRVWPARDYTRVTIESDQPLQNTQQLLQGPD RLVVDLNGLELDQALRDLVSKIAPNDPQIQSVRVGQYQPHVVRMVFDLKGSVKPQVFTLPPVGTYKYRLVFDLYPAVAPD PLSDLIAQTERKEQQLNDTLRAQQAQPPTAALNGPTAAPPAATDNSDAFFQRFAQNNPPAAHSARPAPANPPVAQASPPA APPRPAVKPPPVIARRNDDDSGDTDTYAFTAPKSGRGTVRLLTVAIDPGHGGEDPGAIGGGGTYEKHIALDIAKKLRAKI DAAPNMRAMMTRDADFFVPLNVRVQKARRVGADLFVSIHADAFTTPSARGSSVFALSDHGASSAAARWLANKENSSDLIG GINIKTQDVAVNRALFDMSTTAQIRDSLRYGNYVLREVGGINKLHKGSVEQAGFAVLKAPDIPSILVETAFISNPDEERR LNDDAYRDQMADAIFRGIKRYFSANPPLAKSRMT
Specific function: Cell-wall hydrolase involved in septum cleavage during cell division [H]
COG id: COG0860
COG function: function code M; N-acetylmuramoyl-L-alanine amidase
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]
Homologues:
Organism=Escherichia coli, GI87082163, Length=264, Percent_Identity=52.2727272727273, Blast_Score=266, Evalue=2e-72, Organism=Escherichia coli, GI1788776, Length=232, Percent_Identity=48.2758620689655, Blast_Score=216, Evalue=2e-57, Organism=Escherichia coli, GI1790611, Length=229, Percent_Identity=41.9213973799127, Blast_Score=186, Evalue=2e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021731 - InterPro: IPR002508 - InterPro: IPR006311 [H]
Pfam domain/function: PF01520 Amidase_3; PF11741 AMIN [H]
EC number: =3.5.1.28 [H]
Molecular weight: Translated: 55692; Mature: 55692
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIKPFRSIESAATATHNWRRRQILRAGASTLVLGLALPRLAHASSVLGVRVWPARDYTR CCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEE VTIESDQPLQNTQQLLQGPDRLVVDLNGLELDQALRDLVSKIAPNDPQIQSVRVGQYQPH EEECCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCH VVRMVFDLKGSVKPQVFTLPPVGTYKYRLVFDLYPAVAPDPLSDLIAQTERKEQQLNDTL HEEEEECCCCCCCCEEEECCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH RAQQAQPPTAALNGPTAAPPAATDNSDAFFQRFAQNNPPAAHSARPAPANPPVAQASPPA HHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC APPRPAVKPPPVIARRNDDDSGDTDTYAFTAPKSGRGTVRLLTVAIDPGHGGEDPGAIGG CCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCC GGTYEKHIALDIAKKLRAKIDAAPNMRAMMTRDADFFVPLNVRVQKARRVGADLFVSIHA CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCHHHHHHHHCCCEEEEEEEC DAFTTPSARGSSVFALSDHGASSAAARWLANKENSSDLIGGINIKTQDVAVNRALFDMST CCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEECCCEEEHHHHHHHHHHCCCH TAQIRDSLRYGNYVLREVGGINKLHKGSVEQAGFAVLKAPDIPSILVETAFISNPDEERR HHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHCCEEEEECCCCCHHHHHHHHCCCCCHHHH LNDDAYRDQMADAIFRGIKRYFSANPPLAKSRMT CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC >Mature Secondary Structure MLIKPFRSIESAATATHNWRRRQILRAGASTLVLGLALPRLAHASSVLGVRVWPARDYTR CCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEE VTIESDQPLQNTQQLLQGPDRLVVDLNGLELDQALRDLVSKIAPNDPQIQSVRVGQYQPH EEECCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCH VVRMVFDLKGSVKPQVFTLPPVGTYKYRLVFDLYPAVAPDPLSDLIAQTERKEQQLNDTL HEEEEECCCCCCCCEEEECCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH RAQQAQPPTAALNGPTAAPPAATDNSDAFFQRFAQNNPPAAHSARPAPANPPVAQASPPA HHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC APPRPAVKPPPVIARRNDDDSGDTDTYAFTAPKSGRGTVRLLTVAIDPGHGGEDPGAIGG CCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCC GGTYEKHIALDIAKKLRAKIDAAPNMRAMMTRDADFFVPLNVRVQKARRVGADLFVSIHA CCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEECCHHHHHHHHCCCEEEEEEEC DAFTTPSARGSSVFALSDHGASSAAARWLANKENSSDLIGGINIKTQDVAVNRALFDMST CCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEECCCEEEHHHHHHHHHHCCCH TAQIRDSLRYGNYVLREVGGINKLHKGSVEQAGFAVLKAPDIPSILVETAFISNPDEERR HHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHCCEEEEECCCCCHHHHHHHHCCCCCHHHH LNDDAYRDQMADAIFRGIKRYFSANPPLAKSRMT CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]