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The map label for this gene is abgR [H]

Identifier: 53718479

GI number: 53718479

Start: 978086

End: 979000

Strand: Reverse

Name: abgR [H]

Synonym: BPSL0841

Alternate gene names: 53718479

Gene position: 979000-978086 (Counterclockwise)

Preceding gene: 53718485

Following gene: 53718478

Centisome position: 24.03

GC content: 73.55

Gene sequence:

>915_bases
ATGACTTTCGACCTGCGCCAATTGCGCGCCTTCACGACGATCGCCGCGAGCGGCAGCCTCGGGCGCGCGGCCGACGCGCT
GCACGTCACGCAGCCGGCGTTGAGCCGCATCCTGAAGCGGCTCGAGGAGCAGATCGGCGCGCCGCTCTTCGAGCGCCATT
CGAAGGGCGTGCAACTGACCGCGATCGGCGAGGCGCTGCTGCCGCACGCGACGCTGCTGCAACACGAGGCCGAGCACGCG
CGCGAGGAAATCGACGCGCTGCGCGGGCTCGCGAAAGGCACGATCAAGGTGGGCGCGGTCGGCAGCATCGCGAGCCTCGT
GCTGCCGGTGGCGCTCGGGCGCGTGCTCGACCGCTGGCCGAACCTGCGCGTCGTGATCGTCGAAGGCGTGTGGGACCGGC
TCGTCGACGCGCTGCTCACGCACGAGATCGACATCGCGTTGAGCACGCGCGTGCCGGACACCGACGAAGTCGTCGCGATC
GCCGAATGCCGGTGGGACGACATGAGCCACGTCGTCGCCGCGCCCGACCATCCGCTGCGCGCCGCCGCGCGCGCGCCGCT
CACGCTCGCCGACACGCGCGCCGCGCGCTGGGCGATCCCGCCGCGCGGCACCGCGCCGTTCGAGCAGATGCGCGCGGCGT
TCGACGCGCACGGGCTCGCGCCGCCCGACATCGCGGTCGAGACCCGCTCGGTGACGGCGCTCAAGAGCCTCGTCGCGCAC
GCGGGCTTCCTGAGCTGGATGGCCGAGCCGATGTACCGGGCGGAACGCCGCGCGCGCACGATCGACACGCTCGCCGTCGA
AGGCGTGGCCGCCACCCGCACGCTGACCGCGTTTCGCCGCCGCCACGGCATCCTGCCCGGGCCGGCCGCACGGCTGCTCG
AAGCGCTCGCGCTGCTGACCCGCGAGCCGTTCTGA

Upstream 100 bases:

>100_bases
GCGGGCGTGTCTCCTCATCGTCATCATCGGTTTCCACAGTATCGGCGGCGCGCACATTCCTCGATACTGTATTTTTTGCA
AGAAGCCATTACACGGCAGC

Downstream 100 bases:

>100_bases
GGCCGCTCCACACCGTTCCGACGGCGTTCCGACACCGTTCGGCGACGAGATGCATCGCATCGCGACGCGCCCGCGCATCG
CGCCGATTGGCGCGCCGCAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 303

Protein sequence:

>304_residues
MTFDLRQLRAFTTIAASGSLGRAADALHVTQPALSRILKRLEEQIGAPLFERHSKGVQLTAIGEALLPHATLLQHEAEHA
REEIDALRGLAKGTIKVGAVGSIASLVLPVALGRVLDRWPNLRVVIVEGVWDRLVDALLTHEIDIALSTRVPDTDEVVAI
AECRWDDMSHVVAAPDHPLRAAARAPLTLADTRAARWAIPPRGTAPFEQMRAAFDAHGLAPPDIAVETRSVTALKSLVAH
AGFLSWMAEPMYRAERRARTIDTLAVEGVAATRTLTAFRRRHGILPGPAARLLEALALLTREPF

Sequences:

>Translated_304_residues
MTFDLRQLRAFTTIAASGSLGRAADALHVTQPALSRILKRLEEQIGAPLFERHSKGVQLTAIGEALLPHATLLQHEAEHA
REEIDALRGLAKGTIKVGAVGSIASLVLPVALGRVLDRWPNLRVVIVEGVWDRLVDALLTHEIDIALSTRVPDTDEVVAI
AECRWDDMSHVVAAPDHPLRAAARAPLTLADTRAARWAIPPRGTAPFEQMRAAFDAHGLAPPDIAVETRSVTALKSLVAH
AGFLSWMAEPMYRAERRARTIDTLAVEGVAATRTLTAFRRRHGILPGPAARLLEALALLTREPF
>Mature_303_residues
TFDLRQLRAFTTIAASGSLGRAADALHVTQPALSRILKRLEEQIGAPLFERHSKGVQLTAIGEALLPHATLLQHEAEHAR
EEIDALRGLAKGTIKVGAVGSIASLVLPVALGRVLDRWPNLRVVIVEGVWDRLVDALLTHEIDIALSTRVPDTDEVVAIA
ECRWDDMSHVVAAPDHPLRAAARAPLTLADTRAARWAIPPRGTAPFEQMRAAFDAHGLAPPDIAVETRSVTALKSLVAHA
GFLSWMAEPMYRAERRARTIDTLAVEGVAATRTLTAFRRRHGILPGPAARLLEALALLTREPF

Specific function: Could be the regulator of the abg operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=253, Percent_Identity=31.2252964426877, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87081904, Length=270, Percent_Identity=30, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=29.5918367346939, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI145693105, Length=186, Percent_Identity=28.494623655914, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI157672245, Length=233, Percent_Identity=26.6094420600858, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789506, Length=246, Percent_Identity=24.7967479674797, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI48994962, Length=158, Percent_Identity=31.6455696202532, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790208, Length=176, Percent_Identity=31.25, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI2367136, Length=185, Percent_Identity=30.2702702702703, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786508, Length=187, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788887, Length=181, Percent_Identity=31.4917127071823, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788297, Length=146, Percent_Identity=30.1369863013699, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786713, Length=199, Percent_Identity=29.6482412060301, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790399, Length=238, Percent_Identity=23.9495798319328, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787530, Length=227, Percent_Identity=22.9074889867841, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33005; Mature: 32873

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFDLRQLRAFTTIAASGSLGRAADALHVTQPALSRILKRLEEQIGAPLFERHSKGVQLT
CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEE
AIGEALLPHATLLQHEAEHAREEIDALRGLAKGTIKVGAVGSIASLVLPVALGRVLDRWP
EHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHCC
NLRVVIVEGVWDRLVDALLTHEIDIALSTRVPDTDEVVAIAECRWDDMSHVVAAPDHPLR
CCEEEEECCHHHHHHHHHHHHHHCEEEECCCCCCCCEEEEECCCCCCCCCEEECCCCCHH
AAARAPLTLADTRAARWAIPPRGTAPFEQMRAAFDAHGLAPPDIAVETRSVTALKSLVAH
HHHCCCCEEECCCHHEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHH
AGFLSWMAEPMYRAERRARTIDTLAVEGVAATRTLTAFRRRHGILPGPAARLLEALALLT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
REPF
CCCC
>Mature Secondary Structure 
TFDLRQLRAFTTIAASGSLGRAADALHVTQPALSRILKRLEEQIGAPLFERHSKGVQLT
CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEE
AIGEALLPHATLLQHEAEHAREEIDALRGLAKGTIKVGAVGSIASLVLPVALGRVLDRWP
EHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHCC
NLRVVIVEGVWDRLVDALLTHEIDIALSTRVPDTDEVVAIAECRWDDMSHVVAAPDHPLR
CCEEEEECCHHHHHHHHHHHHHHCEEEECCCCCCCCEEEEECCCCCCCCCEEECCCCCHH
AAARAPLTLADTRAARWAIPPRGTAPFEQMRAAFDAHGLAPPDIAVETRSVTALKSLVAH
HHHCCCCEEECCCHHEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHH
AGFLSWMAEPMYRAERRARTIDTLAVEGVAATRTLTAFRRRHGILPGPAARLLEALALLT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
REPF
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9829935 [H]