| Definition | Burkholderia pseudomallei K96243 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_006350 |
| Length | 4,074,542 |
Click here to switch to the map view.
The map label for this gene is proP [H]
Identifier: 53718412
GI number: 53718412
Start: 898930
End: 900600
Strand: Reverse
Name: proP [H]
Synonym: BPSL0773
Alternate gene names: 53718412
Gene position: 900600-898930 (Counterclockwise)
Preceding gene: 53718413
Following gene: 53718411
Centisome position: 22.1
GC content: 64.45
Gene sequence:
>1671_bases TTGGAGACATTCATGGCAACGGTTGGCGGACAAATTGCGCACGCGCCGATGACGGGCGACGAAAAGCGCGTGATCTTCGC ATCGTCGCTCGGCACCGTGTTCGAGTGGTACGACTTCTATCTGGCCGGCTCGCTCGCGGCCTACATCAGCAAGAGCTTCT TTTCAGGCGTCAACCCGACCGCCGCGTTCATCTTCACGCTGCTCGGCTTCGCGGCGGGCTTCGCCGTCCGACCGTTCGGC GCGATCGTGTTCGGCCGCCTCGGCGACCTCGTGGGACGCAAGCATACGTTCCTCATCACGATCGTGATCATGGGGATCTC GACGTTCGTCGTCGGCTTCCTGCCGGGCTACGCGTCGATCGGCATCGCCGCGCCCGTGATCTTCATCGCGATGCGGCTGC TGCAAGGCCTCGCGCTCGGCGGCGAATACGGCGGCGCGGCGACATACGTGGCCGAGCATGCACCCTCGCACCGCCGCGGC TTCTATACGTCGTGGATCCAGACGACCGCGACGCTCGGCCTGTTCCTGTCGCTCCTCGTGATTCTCGGCGTGCGCACCGC GATCGGCGAGGAAGCATTCGGCAGTTGGGGCTGGCGCGTGCCGTTCGTCGCGTCGATCCTGCTGCTCGCCGTATCCGTGT GGATCCGCCTGCAACTGAACGAATCGCCGGTGTTCCTGCGGATCAAGGCCGAGGGCAAGACGTCGAAGGCGCCGCTCACC GAAGCGTTCGGCCAGTGGAAGAACCTGAAGATCGTGATCCTCGCGCTCATCGGGCTGACGGCGGGCCAGGCGGTGGTCTG GTACACGGGCCAGTTCTATGCGCTCTTCTTCCTCACGCAAACGCTGAAGGTCGACGGCGCGAGCGCGAACATCCTGATCG CGCTCGCCCTTCTGATCGGCACGCCGTTCTTCGTGTTCTTCGGCTCGCTGTCCGACAGGATCGGCCGCAAGCCGATCATC CTCGCCGGCTGCCTGATCGCCGCGCTCACCTACTTCCCGCTCTTCAAGGCGCTCACGCACTTCGCGAATCCGGCGCTCGA GGCGGCGACGCAAAAGGCGCCGATCACGGTGGTCGCCAATCCCGACGAATGCTCGTTCCAGTTCAACCCGGTGGGCACGG CGAAGTTCACGTCGTCCTGCGACATCGCGAAAAGCGCGCTCGCGAAATCGGGCCTCAATTACGAGAACGTCGCCGCGCCG GCGGGCACGCTTGCGCAGATCAAGATCGGCGACACGGCGATCGCCACGTACGACGGCAAGGCCGCCGACGCAAAAGACCA GGCGAAGGCGTTCGACAAGACGCTCGCGTCGACGCTGAAGGCGGCGGGCTACCCGGCGAAAGCCGACCCGGCCCGGCTCA ACTGGCCGATGACGACGGTGATCCTCGCGATACTCGTGATCTACGTGACGATGGTGTACGGGCCGATCGCGGCGATGCTG GTCGAGATGTTCCCGACGCGGATTCGCTATACGTCGATGTCGCTGCCGTATCACATCGGCAACGGCTGGTTCGGCGGCTT CCTGCCGGCGACGGCGTTCGCGATCGTCGCGGCGAAGGGCGACATCTATTCGGGGCTCTGGTATCCGATCGGCGTCGCGC TCGTCACGTTCGTGATCGGACTGCTGTTCGTGAAGGAAACCAAGGATTCGAATATCTACGCGCAGGATTGA
Upstream 100 bases:
>100_bases GCGCTTTTTTGACGCGCCGAGTCAGTGCGCCGTAAGTTTGCCCTCCAATAATCGACTCGGAGCCGCCCTCCCGGGAGGGC GCGCGACCCCTATATCAAAA
Downstream 100 bases:
>100_bases CGAAGGCGGGCTGCGGCGCGCCGGCGTATGGGAGAGGGCGGGCGGCGGGGGGCCGGCGGTGGAGGTTTGGACCACCGCCG GACGAAGGTCGGCGGCACGC
Product: putative transmembrane transport protein
Products: betaine [Cytoplasm]; Proton [Cytoplasm]; L-proline [Cytoplasm] [C]
Alternate protein names: Proline porter II; PPII [H]
Number of amino acids: Translated: 556; Mature: 556
Protein sequence:
>556_residues METFMATVGGQIAHAPMTGDEKRVIFASSLGTVFEWYDFYLAGSLAAYISKSFFSGVNPTAAFIFTLLGFAAGFAVRPFG AIVFGRLGDLVGRKHTFLITIVIMGISTFVVGFLPGYASIGIAAPVIFIAMRLLQGLALGGEYGGAATYVAEHAPSHRRG FYTSWIQTTATLGLFLSLLVILGVRTAIGEEAFGSWGWRVPFVASILLLAVSVWIRLQLNESPVFLRIKAEGKTSKAPLT EAFGQWKNLKIVILALIGLTAGQAVVWYTGQFYALFFLTQTLKVDGASANILIALALLIGTPFFVFFGSLSDRIGRKPII LAGCLIAALTYFPLFKALTHFANPALEAATQKAPITVVANPDECSFQFNPVGTAKFTSSCDIAKSALAKSGLNYENVAAP AGTLAQIKIGDTAIATYDGKAADAKDQAKAFDKTLASTLKAAGYPAKADPARLNWPMTTVILAILVIYVTMVYGPIAAML VEMFPTRIRYTSMSLPYHIGNGWFGGFLPATAFAIVAAKGDIYSGLWYPIGVALVTFVIGLLFVKETKDSNIYAQD
Sequences:
>Translated_556_residues METFMATVGGQIAHAPMTGDEKRVIFASSLGTVFEWYDFYLAGSLAAYISKSFFSGVNPTAAFIFTLLGFAAGFAVRPFG AIVFGRLGDLVGRKHTFLITIVIMGISTFVVGFLPGYASIGIAAPVIFIAMRLLQGLALGGEYGGAATYVAEHAPSHRRG FYTSWIQTTATLGLFLSLLVILGVRTAIGEEAFGSWGWRVPFVASILLLAVSVWIRLQLNESPVFLRIKAEGKTSKAPLT EAFGQWKNLKIVILALIGLTAGQAVVWYTGQFYALFFLTQTLKVDGASANILIALALLIGTPFFVFFGSLSDRIGRKPII LAGCLIAALTYFPLFKALTHFANPALEAATQKAPITVVANPDECSFQFNPVGTAKFTSSCDIAKSALAKSGLNYENVAAP AGTLAQIKIGDTAIATYDGKAADAKDQAKAFDKTLASTLKAAGYPAKADPARLNWPMTTVILAILVIYVTMVYGPIAAML VEMFPTRIRYTSMSLPYHIGNGWFGGFLPATAFAIVAAKGDIYSGLWYPIGVALVTFVIGLLFVKETKDSNIYAQD >Mature_556_residues METFMATVGGQIAHAPMTGDEKRVIFASSLGTVFEWYDFYLAGSLAAYISKSFFSGVNPTAAFIFTLLGFAAGFAVRPFG AIVFGRLGDLVGRKHTFLITIVIMGISTFVVGFLPGYASIGIAAPVIFIAMRLLQGLALGGEYGGAATYVAEHAPSHRRG FYTSWIQTTATLGLFLSLLVILGVRTAIGEEAFGSWGWRVPFVASILLLAVSVWIRLQLNESPVFLRIKAEGKTSKAPLT EAFGQWKNLKIVILALIGLTAGQAVVWYTGQFYALFFLTQTLKVDGASANILIALALLIGTPFFVFFGSLSDRIGRKPII LAGCLIAALTYFPLFKALTHFANPALEAATQKAPITVVANPDECSFQFNPVGTAKFTSSCDIAKSALAKSGLNYENVAAP AGTLAQIKIGDTAIATYDGKAADAKDQAKAFDKTLASTLKAAGYPAKADPARLNWPMTTVILAILVIYVTMVYGPIAAML VEMFPTRIRYTSMSLPYHIGNGWFGGFLPATAFAIVAAKGDIYSGLWYPIGVALVTFVIGLLFVKETKDSNIYAQD
Specific function: Proton symporter that senses osmotic shifts and responds by importing osmolytes such as proline, glycine betaine, stachydrine, pipecolic acid, ectoine and taurine. It is both an osmosensor and an osmoregulator which is available to participate early in th
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Escherichia coli, GI1790550, Length=328, Percent_Identity=35.9756097560976, Blast_Score=197, Evalue=1e-51, Organism=Escherichia coli, GI1788292, Length=328, Percent_Identity=35.0609756097561, Blast_Score=186, Evalue=4e-48, Organism=Escherichia coli, GI1788942, Length=333, Percent_Identity=34.8348348348348, Blast_Score=171, Evalue=1e-43, Organism=Escherichia coli, GI1789941, Length=352, Percent_Identity=35.7954545454545, Blast_Score=151, Evalue=1e-37, Organism=Escherichia coli, GI87082231, Length=223, Percent_Identity=29.1479820627803, Blast_Score=79, Evalue=7e-16, Organism=Escherichia coli, GI87082404, Length=317, Percent_Identity=24.2902208201893, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004736 - InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR015041 - InterPro: IPR005828 - InterPro: IPR005829 [H]
Pfam domain/function: PF08946 Osmo_CC; PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 59502; Mature: 59502
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METFMATVGGQIAHAPMTGDEKRVIFASSLGTVFEWYDFYLAGSLAAYISKSFFSGVNPT CCCHHHHHCCCEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH AAFIFTLLGFAAGFAVRPFGAIVFGRLGDLVGRKHTFLITIVIMGISTFVVGFLPGYASI HHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHH GIAAPVIFIAMRLLQGLALGGEYGGAATYVAEHAPSHRRGFYTSWIQTTATLGLFLSLLV HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH ILGVRTAIGEEAFGSWGWRVPFVASILLLAVSVWIRLQLNESPVFLRIKAEGKTSKAPLT HHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHEEEEECCCCEEEEEEECCCCCCCCHH EAFGQWKNLKIVILALIGLTAGQAVVWYTGQFYALFFLTQTLKVDGASANILIALALLIG HHHCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHEECCCCCHHHHHHHHHHC TPFFVFFGSLSDRIGRKPIILAGCLIAALTYFPLFKALTHFANPALEAATQKAPITVVAN CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEEC PDECSFQFNPVGTAKFTSSCDIAKSALAKSGLNYENVAAPAGTLAQIKIGDTAIATYDGK CCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEECCCC AADAKDQAKAFDKTLASTLKAAGYPAKADPARLNWPMTTVILAILVIYVTMVYGPIAAML CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VEMFPTRIRYTSMSLPYHIGNGWFGGFLPATAFAIVAAKGDIYSGLWYPIGVALVTFVIG HHHHHHHEEEEEECCCEEECCCCCCHHHHHHHHHHHEECCCHHCCHHHHHHHHHHHHHHH LLFVKETKDSNIYAQD HHHHHCCCCCCCEECC >Mature Secondary Structure METFMATVGGQIAHAPMTGDEKRVIFASSLGTVFEWYDFYLAGSLAAYISKSFFSGVNPT CCCHHHHHCCCEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH AAFIFTLLGFAAGFAVRPFGAIVFGRLGDLVGRKHTFLITIVIMGISTFVVGFLPGYASI HHHHHHHHHHHHCCHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHH GIAAPVIFIAMRLLQGLALGGEYGGAATYVAEHAPSHRRGFYTSWIQTTATLGLFLSLLV HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH ILGVRTAIGEEAFGSWGWRVPFVASILLLAVSVWIRLQLNESPVFLRIKAEGKTSKAPLT HHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHEEEEECCCCEEEEEEECCCCCCCCHH EAFGQWKNLKIVILALIGLTAGQAVVWYTGQFYALFFLTQTLKVDGASANILIALALLIG HHHCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHEECCCCCHHHHHHHHHHC TPFFVFFGSLSDRIGRKPIILAGCLIAALTYFPLFKALTHFANPALEAATQKAPITVVAN CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEEC PDECSFQFNPVGTAKFTSSCDIAKSALAKSGLNYENVAAPAGTLAQIKIGDTAIATYDGK CCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCEEEEECCCC AADAKDQAKAFDKTLASTLKAAGYPAKADPARLNWPMTTVILAILVIYVTMVYGPIAAML CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VEMFPTRIRYTSMSLPYHIGNGWFGGFLPATAFAIVAAKGDIYSGLWYPIGVALVTFVIG HHHHHHHEEEEEECCCEEECCCCCCHHHHHHHHHHHEECCCHHCCHHHHHHHHHHHHHHH LLFVKETKDSNIYAQD HHHHHCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: betaine [Periplasm]; Proton [Periplasm]; L-proline [Periplasm] [C]
Specific reaction: Proton [Periplasm] + betaine [Periplasm] = Proton [Cytoplasm] + betaine [Cytoplasm] Proton [Periplasm] + L-proline [Periplasm] = Proton [Cytoplasm] + L-proline [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]