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The map label for this gene is ydiF [H]

Identifier: 53718015

GI number: 53718015

Start: 405732

End: 407378

Strand: Reverse

Name: ydiF [H]

Synonym: BPSL0375

Alternate gene names: 53718015

Gene position: 407378-405732 (Counterclockwise)

Preceding gene: 53718016

Following gene: 53718013

Centisome position: 10.0

GC content: 75.35

Gene sequence:

>1647_bases
ATGGCCCGGACCGCTCCCGCCGGCGCGCTCGTCGCGCTTCATCACGTTTCCTTTCGCTTCGACGACGGCGTCACGCTGTT
CGATTCGCTCGACCTCACGTTCGATCGCGCGCCGAGCGCGATCGTCGGCCGCAACGGCGCCGGCAAGAGCGTGCTCGCGC
GCCTGATCGCCGGCCGGCTCGCACCGACGGCGGGCGCGATCGAGCGGCACGCGTCGATCGCGTTCGTCGCGCAGCACGAC
GCCGACGCGATGCACGATTCGCGATGCACGGCTGCCGCCGTCGCGCGCCTCGACGCGCCGCTCGCCGCGCTCGAGCGCGT
CGCGCGCGGCGATGCGCGCGCGGACGACTTCGACTTGCTCGACGGACGCTGGGACCTCGCCGAGCGCTGGCAGGCGGCGC
TCGACGAAGCCGGACTGCCGCCGCTCGACGCGCGCACGCCCGCGCACGCGCTGAGCGGCGGCCAGCTCGCGCGCGTCGCG
ATGATCGGCGCGCTGCTCTCGGGCGCGGACCTGCTCGTCGCCGACGAGCCGACGAACCATCTCGACGCGCCCGGCCGCGA
ATGGCTGCGCGCGGCGCTCGCCGGCTGGCGCGGCGGCCTCGTCGTCGTGAGCCACGATCGCGCGCTGCTCGCCGACGTCG
AGCGAATCGTGGAGCTGACGCCGCGCGGCGCGCGCGTGTACGGCGGCAACTACGCCGCGTATCGTGCGCAGCGCGACGCC
GAGGCCCAGGCGGCGCAGGCCGCGCTCGATCACGCGCACGCCGAGCGCGAGCGCGAGCGCCGCCGGCTCGCGCGCGAGCA
CGACACGATCCAGCGGCATGCGGCCGCCACGCGCCGCTATGCGGAGACGGCCAACCTGCCGAGCGGCAAGCGCGTGTCGC
TGAAGAACAGCGCGCGCGAGATCATGGGCCGCGTGCGGCGCGATCATCGCGACACGAAGACCGCGTTGGGCGACGCGGTA
CAGGCGGCGGCGGCGCGCATCGAGCCGGATGCGCCGGTGCTCGTGTCGCTGCCGGGCACCGAGATCGCCGCGCGCCGCCG
GCTCTTCACGCTCGACGCCGCGCGGCTGCCGTGGCTGCCCGCGCACGCGCGCGCGGCCACCGTCACGTGGTCCGCGCACG
GGCCCGCGCGCATCGCGCTCACGGGGCCGAACGGCTGCGGGAAATCGACGCTGCTGCGCATGCTGGCCGGCGAATGCGCG
CCGCGCGCGGGGCGTTGCGACACACACGTGCCGCTCGCGTATCTCGACCAGCGGCTCGCGCTGCTCGATCCGCGGCGCTC
CGTCGTCGAGCAGCTCGCGGCGCTGCGCACGCCGCTCGGGCAGGGCGAGCTGCGCAGCCGGCTCGCGTTGCTTCAGCTCG
ACGCGACGCGCGCGACGCAGCCGAGCGCGCGGCTAAGCGGCGGCGAGCGGCTGAAGGCGGCGCTCGCCTGCGCGCTGTGG
CGCGAGACGCCCGCGCAACTGCTGCTGCTCGACGAGCCGACGAACCATCTCGATCTCGAATCGGTGCGTGCGTTCGAAGC
CGCGCTCGCGGATTTTCCGGGGGCGATCGTCGCGGTGTCGCACGACGCGGCGTTCATCGACGCGCTCGCGCCGACGCACG
CGATGCGGTGGACGAGCGAGGGCTGGCGCTTCGAGCCCGTCGCGTGA

Upstream 100 bases:

>100_bases
CCTTCCCCCGAATGGTTTCGCCGCTGCGCATTGCGTTTCGTGCCCGTCATGCACGCCGTACGCGCCGCGCGAATGTCGCA
ATCCATTTCCGGAGGTGCTC

Downstream 100 bases:

>100_bases
CGGGCGGGGCCGCCTCGGTAAATCGGTAAATCGGTGAATCGGTGAAGCAGCGAGTCTGAAAGACTGAAAGGCGGCGACGC
GGCAAGACCGCGAGGCAGCG

Product: ABC transport system ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 548; Mature: 547

Protein sequence:

>548_residues
MARTAPAGALVALHHVSFRFDDGVTLFDSLDLTFDRAPSAIVGRNGAGKSVLARLIAGRLAPTAGAIERHASIAFVAQHD
ADAMHDSRCTAAAVARLDAPLAALERVARGDARADDFDLLDGRWDLAERWQAALDEAGLPPLDARTPAHALSGGQLARVA
MIGALLSGADLLVADEPTNHLDAPGREWLRAALAGWRGGLVVVSHDRALLADVERIVELTPRGARVYGGNYAAYRAQRDA
EAQAAQAALDHAHAERERERRRLAREHDTIQRHAAATRRYAETANLPSGKRVSLKNSAREIMGRVRRDHRDTKTALGDAV
QAAAARIEPDAPVLVSLPGTEIAARRRLFTLDAARLPWLPAHARAATVTWSAHGPARIALTGPNGCGKSTLLRMLAGECA
PRAGRCDTHVPLAYLDQRLALLDPRRSVVEQLAALRTPLGQGELRSRLALLQLDATRATQPSARLSGGERLKAALACALW
RETPAQLLLLDEPTNHLDLESVRAFEAALADFPGAIVAVSHDAAFIDALAPTHAMRWTSEGWRFEPVA

Sequences:

>Translated_548_residues
MARTAPAGALVALHHVSFRFDDGVTLFDSLDLTFDRAPSAIVGRNGAGKSVLARLIAGRLAPTAGAIERHASIAFVAQHD
ADAMHDSRCTAAAVARLDAPLAALERVARGDARADDFDLLDGRWDLAERWQAALDEAGLPPLDARTPAHALSGGQLARVA
MIGALLSGADLLVADEPTNHLDAPGREWLRAALAGWRGGLVVVSHDRALLADVERIVELTPRGARVYGGNYAAYRAQRDA
EAQAAQAALDHAHAERERERRRLAREHDTIQRHAAATRRYAETANLPSGKRVSLKNSAREIMGRVRRDHRDTKTALGDAV
QAAAARIEPDAPVLVSLPGTEIAARRRLFTLDAARLPWLPAHARAATVTWSAHGPARIALTGPNGCGKSTLLRMLAGECA
PRAGRCDTHVPLAYLDQRLALLDPRRSVVEQLAALRTPLGQGELRSRLALLQLDATRATQPSARLSGGERLKAALACALW
RETPAQLLLLDEPTNHLDLESVRAFEAALADFPGAIVAVSHDAAFIDALAPTHAMRWTSEGWRFEPVA
>Mature_547_residues
ARTAPAGALVALHHVSFRFDDGVTLFDSLDLTFDRAPSAIVGRNGAGKSVLARLIAGRLAPTAGAIERHASIAFVAQHDA
DAMHDSRCTAAAVARLDAPLAALERVARGDARADDFDLLDGRWDLAERWQAALDEAGLPPLDARTPAHALSGGQLARVAM
IGALLSGADLLVADEPTNHLDAPGREWLRAALAGWRGGLVVVSHDRALLADVERIVELTPRGARVYGGNYAAYRAQRDAE
AQAAQAALDHAHAERERERRRLAREHDTIQRHAAATRRYAETANLPSGKRVSLKNSAREIMGRVRRDHRDTKTALGDAVQ
AAAARIEPDAPVLVSLPGTEIAARRRLFTLDAARLPWLPAHARAATVTWSAHGPARIALTGPNGCGKSTLLRMLAGECAP
RAGRCDTHVPLAYLDQRLALLDPRRSVVEQLAALRTPLGQGELRSRLALLQLDATRATQPSARLSGGERLKAALACALWR
ETPAQLLLLDEPTNHLDLESVRAFEAALADFPGAIVAVSHDAAFIDALAPTHAMRWTSEGWRFEPVA

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=522, Percent_Identity=28.3524904214559, Blast_Score=146, Evalue=6e-35,
Organism=Homo sapiens, GI10947137, Length=541, Percent_Identity=28.8354898336414, Blast_Score=133, Evalue=4e-31,
Organism=Homo sapiens, GI27881506, Length=543, Percent_Identity=28.7292817679558, Blast_Score=133, Evalue=5e-31,
Organism=Homo sapiens, GI69354671, Length=545, Percent_Identity=26.7889908256881, Blast_Score=127, Evalue=4e-29,
Organism=Homo sapiens, GI10947135, Length=545, Percent_Identity=26.7889908256881, Blast_Score=127, Evalue=4e-29,
Organism=Escherichia coli, GI1787182, Length=568, Percent_Identity=28.8732394366197, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI1789751, Length=517, Percent_Identity=29.2069632495164, Blast_Score=165, Evalue=8e-42,
Organism=Escherichia coli, GI2367384, Length=536, Percent_Identity=30.7835820895522, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1787041, Length=527, Percent_Identity=25.8064516129032, Blast_Score=129, Evalue=5e-31,
Organism=Caenorhabditis elegans, GI17555318, Length=519, Percent_Identity=27.1676300578035, Blast_Score=142, Evalue=4e-34,
Organism=Caenorhabditis elegans, GI17559834, Length=567, Percent_Identity=25.9259259259259, Blast_Score=141, Evalue=8e-34,
Organism=Caenorhabditis elegans, GI17553372, Length=523, Percent_Identity=27.7246653919694, Blast_Score=135, Evalue=7e-32,
Organism=Saccharomyces cerevisiae, GI6320874, Length=550, Percent_Identity=27.6363636363636, Blast_Score=136, Evalue=7e-33,
Organism=Saccharomyces cerevisiae, GI6321121, Length=550, Percent_Identity=26, Blast_Score=134, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6323278, Length=158, Percent_Identity=32.9113924050633, Blast_Score=75, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6324314, Length=206, Percent_Identity=29.6116504854369, Blast_Score=74, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6325030, Length=84, Percent_Identity=39.2857142857143, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24642252, Length=508, Percent_Identity=28.740157480315, Blast_Score=155, Evalue=9e-38,
Organism=Drosophila melanogaster, GI18859989, Length=508, Percent_Identity=28.740157480315, Blast_Score=155, Evalue=9e-38,
Organism=Drosophila melanogaster, GI24666836, Length=544, Percent_Identity=28.125, Blast_Score=140, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24641342, Length=396, Percent_Identity=28.7878787878788, Blast_Score=123, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 58846; Mature: 58715

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARTAPAGALVALHHVSFRFDDGVTLFDSLDLTFDRAPSAIVGRNGAGKSVLARLIAGRL
CCCCCCCCCEEEEHHEEEEECCCCEEEECCCCEECCCCCCEECCCCCCHHHHHHHHHHHC
APTAGAIERHASIAFVAQHDADAMHDSRCTAAAVARLDAPLAALERVARGDARADDFDLL
CCCHHHHHHCCCEEEEEECCCHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC
DGRWDLAERWQAALDEAGLPPLDARTPAHALSGGQLARVAMIGALLSGADLLVADEPTNH
CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCC
LDAPGREWLRAALAGWRGGLVVVSHDRALLADVERIVELTPRGARVYGGNYAAYRAQRDA
CCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEECCCEEEHHCCHHH
EAQAAQAALDHAHAERERERRRLAREHDTIQRHAAATRRYAETANLPSGKRVSLKNSARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHH
IMGRVRRDHRDTKTALGDAVQAAAARIEPDAPVLVSLPGTEIAARRRLFTLDAARLPWLP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHEEECHHHCCCCC
AHARAATVTWSAHGPARIALTGPNGCGKSTLLRMLAGECAPRAGRCDTHVPLAYLDQRLA
CCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
LLDPRRSVVEQLAALRTPLGQGELRSRLALLQLDATRATQPSARLSGGERLKAALACALW
HCCCHHHHHHHHHHHHCCCCCHHHHHHHHHEEECCCCCCCCCHHCCCHHHHHHHHHHHHH
RETPAQLLLLDEPTNHLDLESVRAFEAALADFPGAIVAVSHDAAFIDALAPTHAMRWTSE
HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCHHHHHCCCC
GWRFEPVA
CCEECCCC
>Mature Secondary Structure 
ARTAPAGALVALHHVSFRFDDGVTLFDSLDLTFDRAPSAIVGRNGAGKSVLARLIAGRL
CCCCCCCCEEEEHHEEEEECCCCEEEECCCCEECCCCCCEECCCCCCHHHHHHHHHHHC
APTAGAIERHASIAFVAQHDADAMHDSRCTAAAVARLDAPLAALERVARGDARADDFDLL
CCCHHHHHHCCCEEEEEECCCHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC
DGRWDLAERWQAALDEAGLPPLDARTPAHALSGGQLARVAMIGALLSGADLLVADEPTNH
CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEECCCCCC
LDAPGREWLRAALAGWRGGLVVVSHDRALLADVERIVELTPRGARVYGGNYAAYRAQRDA
CCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEECCCEEEHHCCHHH
EAQAAQAALDHAHAERERERRRLAREHDTIQRHAAATRRYAETANLPSGKRVSLKNSARE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHH
IMGRVRRDHRDTKTALGDAVQAAAARIEPDAPVLVSLPGTEIAARRRLFTLDAARLPWLP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHEEECHHHCCCCC
AHARAATVTWSAHGPARIALTGPNGCGKSTLLRMLAGECAPRAGRCDTHVPLAYLDQRLA
CCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
LLDPRRSVVEQLAALRTPLGQGELRSRLALLQLDATRATQPSARLSGGERLKAALACALW
HCCCHHHHHHHHHHHHCCCCCHHHHHHHHHEEECCCCCCCCCHHCCCHHHHHHHHHHHHH
RETPAQLLLLDEPTNHLDLESVRAFEAALADFPGAIVAVSHDAAFIDALAPTHAMRWTSE
HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCHHHHHCCCC
GWRFEPVA
CCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Endonuclease; Excision [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]