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The map label for this gene is ubiB

Identifier: 52843126

GI number: 52843126

Start: 3317252

End: 3317989

Strand: Reverse

Name: ubiB

Synonym: lpg2932

Alternate gene names: 52843126

Gene position: 3317989-3317252 (Counterclockwise)

Preceding gene: 52843127

Following gene: 52843122

Centisome position: 97.65

GC content: 41.19

Gene sequence:

>738_bases
TTGGTCCTTATTAGGATTAAAATAATGACAGATAAAATAATTCAAGCTCAGGTGGAGGACATTTCCCCTTTAACGGACAG
CATCGTGCGATTGGTCTTAATGCCTGATGAATACGTTGATTATCAAGCCGGACAGTATTTGCAAATCCTGTTTGCAAATG
ATGCGTTTAGTTATTCAATTGCAAATGCGCCTTTAGGTTCTCATCGTTATGAATTGCATATTCGCCATAGCCAGGATAAT
GATTACCATCAATCGTTATTGGCTCATATCAAACAATATGGATCTCTGCGCTTAAGATTACCTTTGGGTGAATGCAGTAT
CGATCAATTACATCCCCAAAAACCCATTTTATTCATTGCCGGTGGGACTGGATTTGCGCCAATTAAAGCCATGATTGAGC
AGTTACTGGCAGATTCGGACAGCAGGCCATTTGAGTTATTTTGGGGAGCACGCTCACAAAGCGATTTATACATGGATGAA
AAAGTAAGGAGTTGGCGCTCCCATGCCAGCCACTTCCAATATTTTTCGCTATTATCCAATAAAAGTGAGGATACTTTGGC
TTCTCGAGTTCTTGCCAGGCATGCAAACATTCTACGGGACTGGCAAATTGTCATCAGCGGTCCTTTCGATATGGTGTACA
GTACTCGTGATACCTTGGTTGGTTATGGCATATCGCCTACCCAGATGTTTTCAGATGCCTTTAGTTTTGAATCCAAAACA
GATGATGCAAAAAACTGA

Upstream 100 bases:

>100_bases
TGGGTATGGATGCTACCAGTAAATGGCCAGGAGAAACACAAAGAGAATGGGGTAAACCAATTACGATGGATGAAGATGTG
CTTAATAGAGTAAATGGTTA

Downstream 100 bases:

>100_bases
GTGGAATGGAGTGAATTAATGGAAACTTTATATCAAATTTTAGGACTCATTGGCGCCGGATTGATTATTTTTATATTGTA
CCGATTTATTAAGGGAAGCC

Product: CDP-6-deoxy-3,4-glucoseen reductase

Products: NAD(P); FMNH2; 2-octaprenyl-6-hydroxyphenol [C]

Alternate protein names: CDP-6-deoxy-delta-3,4-glucoseen reductase; E3 [H]

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MVLIRIKIMTDKIIQAQVEDISPLTDSIVRLVLMPDEYVDYQAGQYLQILFANDAFSYSIANAPLGSHRYELHIRHSQDN
DYHQSLLAHIKQYGSLRLRLPLGECSIDQLHPQKPILFIAGGTGFAPIKAMIEQLLADSDSRPFELFWGARSQSDLYMDE
KVRSWRSHASHFQYFSLLSNKSEDTLASRVLARHANILRDWQIVISGPFDMVYSTRDTLVGYGISPTQMFSDAFSFESKT
DDAKN

Sequences:

>Translated_245_residues
MVLIRIKIMTDKIIQAQVEDISPLTDSIVRLVLMPDEYVDYQAGQYLQILFANDAFSYSIANAPLGSHRYELHIRHSQDN
DYHQSLLAHIKQYGSLRLRLPLGECSIDQLHPQKPILFIAGGTGFAPIKAMIEQLLADSDSRPFELFWGARSQSDLYMDE
KVRSWRSHASHFQYFSLLSNKSEDTLASRVLARHANILRDWQIVISGPFDMVYSTRDTLVGYGISPTQMFSDAFSFESKT
DDAKN
>Mature_245_residues
MVLIRIKIMTDKIIQAQVEDISPLTDSIVRLVLMPDEYVDYQAGQYLQILFANDAFSYSIANAPLGSHRYELHIRHSQDN
DYHQSLLAHIKQYGSLRLRLPLGECSIDQLHPQKPILFIAGGTGFAPIKAMIEQLLADSDSRPFELFWGARSQSDLYMDE
KVRSWRSHASHFQYFSLLSNKSEDTLASRVLARHANILRDWQIVISGPFDMVYSTRDTLVGYGISPTQMFSDAFSFESKT
DDAKN

Specific function: Participates in the conversion of CDP-6-deoxy-D-glycero- L-threo-4-hexulose to 3,6-dideoxy-D-glycero-D-glycero-4-hexulose together with CDP-6-deoxy-D-glycero-L-threo-4-hexulose-3-dehydrase (E1) in two consecutive steps. The detailed mechanism of E3 is not

COG id: COG0543

COG function: function code HC; 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding FR-type domain [H]

Homologues:

Organism=Escherichia coli, GI2367314, Length=231, Percent_Identity=25.974025974026, Blast_Score=88, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006058
- InterPro:   IPR012675
- InterPro:   IPR017927
- InterPro:   IPR001041
- InterPro:   IPR008333
- InterPro:   IPR001433
- InterPro:   IPR001221
- InterPro:   IPR017938 [H]

Pfam domain/function: PF00970 FAD_binding_6; PF00111 Fer2; PF00175 NAD_binding_1 [H]

EC number: 1.5.1.29 [C]

Molecular weight: Translated: 27952; Mature: 27952

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLIRIKIMTDKIIQAQVEDISPLTDSIVRLVLMPDEYVDYQAGQYLQILFANDAFSYSI
CEEEEEEEEHHHHHHHHHHHCCHHHHHHHEEEECCCHHCCCCCCCEEEEEEECCCCEEEE
ANAPLGSHRYELHIRHSQDNDYHQSLLAHIKQYGSLRLRLPLGECSIDQLHPQKPILFIA
CCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHCCCCCCEEEEE
GGTGFAPIKAMIEQLLADSDSRPFELFWGARSQSDLYMDEKVRSWRSHASHFQYFSLLSN
CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
KSEDTLASRVLARHANILRDWQIVISGPFDMVYSTRDTLVGYGISPTQMFSDAFSFESKT
CCHHHHHHHHHHHHHHHHEEEEEEEECCHHHEECCCHHEEECCCCHHHHHHHHHCCCCCC
DDAKN
CCCCC
>Mature Secondary Structure
MVLIRIKIMTDKIIQAQVEDISPLTDSIVRLVLMPDEYVDYQAGQYLQILFANDAFSYSI
CEEEEEEEEHHHHHHHHHHHCCHHHHHHHEEEECCCHHCCCCCCCEEEEEEECCCCEEEE
ANAPLGSHRYELHIRHSQDNDYHQSLLAHIKQYGSLRLRLPLGECSIDQLHPQKPILFIA
CCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHCCCCCCEEEEE
GGTGFAPIKAMIEQLLADSDSRPFELFWGARSQSDLYMDEKVRSWRSHASHFQYFSLLSN
CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
KSEDTLASRVLARHANILRDWQIVISGPFDMVYSTRDTLVGYGISPTQMFSDAFSFESKT
CCHHHHHHHHHHHHHHHHEEEEEEEECCHHHEECCCHHEEECCCCHHHHHHHHHCCCCCC
DDAKN
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NAD(P)H2; FMN [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NAD(P)H2; FMN; 2 2-octaprenylphenol; O2 [C]

Specific reaction: NAD(P)H2 + FMN = NAD(P) + FMNH2 2 2-octaprenylphenol + O2 = 2 2-octaprenyl-6-hydroxyphenol [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10931327; 11586360; 12142430 [H]