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The map label for this gene is ybjY [C]

Identifier: 52843118

GI number: 52843118

Start: 3309279

End: 3310424

Strand: Reverse

Name: ybjY [C]

Synonym: lpg2924

Alternate gene names: 52843118

Gene position: 3310424-3309279 (Counterclockwise)

Preceding gene: 52843119

Following gene: 52843117

Centisome position: 97.43

GC content: 42.15

Gene sequence:

>1146_bases
ATGAACAATTATCTGAAAATATTCTCTATAGTGTCATTGATTTTAATGCTGGTTTCTTGTGGCAGTTCTGATAAGCCGCA
AACCTCTTCATTAAAAACGTATGAAGTGAAACCTCAACCTTTACACAAGACCTTGCATTTTACCGGGACCGTGCAACCCA
TAAGGGAAAGCAGCCTGACCAGTCCAATGGAAGCCGTTGTTGAAACCATGCATTTCCATTATGGTCAGATGGTTAAAAAG
GGTGAGATTGTTTTAACTTTAAATTCCAATGAATTGCAAAAGCAGTATAACGACACATTAACGGATTACTTAAAGGCGAA
AGACAGTTATTCCATTGCCAAGGCAAAATTTGTAGGAACCGAAGAGCTGTGGAATGCCGGGTTAATCTCCAAAAACAATT
ACTTAAGTGAAAAATCCGGGTTAGATACAGCGCGAGTTACTTTAATGCAGGCCACTCGCAAGCTTTCTGAAATGTTGGAA
AAAATGGATGATAAAAACACTCAGAATATATCTAATCTCAGTCTGGCTGATTTTGACAAAGTGAGGAAGATTCTTACGTC
AAATCATAATCTGATTCATTTAAAGGCTCCCAGTGATGGGATAATGCTGTACCCTCCCAAATCAGGAGAGGATAAAAACA
ATCGAGTGACCGTAGGATCGACCATAAAGTCAGGGCAAGTCATTGCCTTGATAGGCGATTTGAAAGGAATCAGTGTGGAA
ATTGATGTCCCAGAGATAGACATTGATAAAATTCGCCCGGGAATGGAGGCAACAATTAGTGGCGTTGCATTTGGCAGGCA
TCAACTGAAAGGTAAATTGGTGGCGGTGAATGCGCAGGCATCGAATACCAGCACGGGAGGATTACCCTCCTTTACCGCTG
TAGTGGAGGTCAATTCCCTAACTCCTGAACAACAGTCATGGATTAAAGTAGGGATGAGTGCCTCCATAGAGCTGAATGTG
GAATCGAATAATCAATTGTTGATCCCTATCGCGGCGGTTAAAAGGGAAAAAGGCAGCAGCGTTGTTCAGGTCCAATTAGC
CAAGGGGAAAGTTCAGAAACGAATGATTACTACCGGTGCCGCTCAAGCGGATTCAGTAGTGGTTGAAAGTGGCCTTAAAT
CAGGAGATGTCGTGGTTTATGATTGA

Upstream 100 bases:

>100_bases
TGATAGGGGCAAAAATTGCGTATCTCAATCAGTTATCCGCGTTGCAAAGGATTTTAGGGACCACGCTGGATTACTGGCAG
ATTAAACTAAGGTATGGCGG

Downstream 100 bases:

>100_bases
CAGACCTTTAATCCAACTTTCTGATTTGGTGAAGACTTATCATCTTGAGGGTATCAGTACCACGGTATTAAAAGCAGTGT
CTTTGACCGTAAACGAAGGT

Product: lipoprotein

Products: NA

Alternate protein names: RND Family Efflux Transporter MFP Subunit; Secretion Protein HlyD Family Protein; Secretion Protein HlyD; HlyD Family Secretion Protein; PAS/PAC Sensor Protein; RND Efflux Membrane Fusion Protein; Secretion Protein Hlyd; Membrane-Fusion Protein; Conserved Lipoprotein; Hlyd Family Secretion Protein; Secretion Protein Putative RND Family Efflux Protein; Membrane Secretion Protein HlyD

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MNNYLKIFSIVSLILMLVSCGSSDKPQTSSLKTYEVKPQPLHKTLHFTGTVQPIRESSLTSPMEAVVETMHFHYGQMVKK
GEIVLTLNSNELQKQYNDTLTDYLKAKDSYSIAKAKFVGTEELWNAGLISKNNYLSEKSGLDTARVTLMQATRKLSEMLE
KMDDKNTQNISNLSLADFDKVRKILTSNHNLIHLKAPSDGIMLYPPKSGEDKNNRVTVGSTIKSGQVIALIGDLKGISVE
IDVPEIDIDKIRPGMEATISGVAFGRHQLKGKLVAVNAQASNTSTGGLPSFTAVVEVNSLTPEQQSWIKVGMSASIELNV
ESNNQLLIPIAAVKREKGSSVVQVQLAKGKVQKRMITTGAAQADSVVVESGLKSGDVVVYD

Sequences:

>Translated_381_residues
MNNYLKIFSIVSLILMLVSCGSSDKPQTSSLKTYEVKPQPLHKTLHFTGTVQPIRESSLTSPMEAVVETMHFHYGQMVKK
GEIVLTLNSNELQKQYNDTLTDYLKAKDSYSIAKAKFVGTEELWNAGLISKNNYLSEKSGLDTARVTLMQATRKLSEMLE
KMDDKNTQNISNLSLADFDKVRKILTSNHNLIHLKAPSDGIMLYPPKSGEDKNNRVTVGSTIKSGQVIALIGDLKGISVE
IDVPEIDIDKIRPGMEATISGVAFGRHQLKGKLVAVNAQASNTSTGGLPSFTAVVEVNSLTPEQQSWIKVGMSASIELNV
ESNNQLLIPIAAVKREKGSSVVQVQLAKGKVQKRMITTGAAQADSVVVESGLKSGDVVVYD
>Mature_381_residues
MNNYLKIFSIVSLILMLVSCGSSDKPQTSSLKTYEVKPQPLHKTLHFTGTVQPIRESSLTSPMEAVVETMHFHYGQMVKK
GEIVLTLNSNELQKQYNDTLTDYLKAKDSYSIAKAKFVGTEELWNAGLISKNNYLSEKSGLDTARVTLMQATRKLSEMLE
KMDDKNTQNISNLSLADFDKVRKILTSNHNLIHLKAPSDGIMLYPPKSGEDKNNRVTVGSTIKSGQVIALIGDLKGISVE
IDVPEIDIDKIRPGMEATISGVAFGRHQLKGKLVAVNAQASNTSTGGLPSFTAVVEVNSLTPEQQSWIKVGMSASIELNV
ESNNQLLIPIAAVKREKGSSVVQVQLAKGKVQKRMITTGAAQADSVVVESGLKSGDVVVYD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41509; Mature: 41509

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNYLKIFSIVSLILMLVSCGSSDKPQTSSLKTYEVKPQPLHKTLHFTGTVQPIRESSLT
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCHHHHHCCC
SPMEAVVETMHFHYGQMVKKGEIVLTLNSNELQKQYNDTLTDYLKAKDSYSIAKAKFVGT
CHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEHEEECCH
EELWNAGLISKNNYLSEKSGLDTARVTLMQATRKLSEMLEKMDDKNTQNISNLSLADFDK
HHHHCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
VRKILTSNHNLIHLKAPSDGIMLYPPKSGEDKNNRVTVGSTIKSGQVIALIGDLKGISVE
HHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCEEEEECEECCCCEEEEEECCCCEEEE
IDVPEIDIDKIRPGMEATISGVAFGRHQLKGKLVAVNAQASNTSTGGLPSFTAVVEVNSL
EECCCCCHHHCCCCHHHHHHHHHHCHHHHCCEEEEEEECCCCCCCCCCCCEEEEEEECCC
TPEQQSWIKVGMSASIELNVESNNQLLIPIAAVKREKGSSVVQVQLAKGKVQKRMITTGA
CCCHHHHHEECCCEEEEEEECCCCEEEEEEHHCCCCCCCCEEEEEECCCHHHHHHHHCCC
AQADSVVVESGLKSGDVVVYD
CCCCHHHHHCCCCCCCEEEEC
>Mature Secondary Structure
MNNYLKIFSIVSLILMLVSCGSSDKPQTSSLKTYEVKPQPLHKTLHFTGTVQPIRESSLT
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCHHHHHCCC
SPMEAVVETMHFHYGQMVKKGEIVLTLNSNELQKQYNDTLTDYLKAKDSYSIAKAKFVGT
CHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCEEHEEECCH
EELWNAGLISKNNYLSEKSGLDTARVTLMQATRKLSEMLEKMDDKNTQNISNLSLADFDK
HHHHCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
VRKILTSNHNLIHLKAPSDGIMLYPPKSGEDKNNRVTVGSTIKSGQVIALIGDLKGISVE
HHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCEEEEECEECCCCEEEEEECCCCEEEE
IDVPEIDIDKIRPGMEATISGVAFGRHQLKGKLVAVNAQASNTSTGGLPSFTAVVEVNSL
EECCCCCHHHCCCCHHHHHHHHHHCHHHHCCEEEEEEECCCCCCCCCCCCEEEEEEECCC
TPEQQSWIKVGMSASIELNVESNNQLLIPIAAVKREKGSSVVQVQLAKGKVQKRMITTGA
CCCHHHHHEECCCEEEEEEECCCCEEEEEEHHCCCCCCCCEEEEEECCCHHHHHHHHCCC
AQADSVVVESGLKSGDVVVYD
CCCCHHHHHCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA