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The map label for this gene is rlpA [H]

Identifier: 52842762

GI number: 52842762

Start: 2887612

End: 2888094

Strand: Direct

Name: rlpA [H]

Synonym: lpg2554

Alternate gene names: 52842762

Gene position: 2887612-2888094 (Clockwise)

Preceding gene: 52842761

Following gene: 52842764

Centisome position: 84.99

GC content: 40.79

Gene sequence:

>483_bases
ATGAATTACGTATATTTAAAATCTGTAGCGGAAGTAGAAGATAACTTTATGAATTATTATTCGATTTTGTTGACCATTAA
ACGACTCATTATAGGTTTACTCCCCATACTACTGGTTGCTTGTACGCATCAGCAATCTCATGGTCCGGATCACTATGTAG
TCAGAGGGAAAACATATCATGTGATGAAGTCTGCCAAACACTACAAAGCAAAAGGAATTGCTTCCTGGTATGGGTCACAC
GCTCGGCACCAAAAAACATCGACCGGAGAGCGTTACAACATGTATGCGATGACAGCCGCTCATCCAACGCTCCCAATTGC
TACACGAGTACGTGTCAAAAACCTGAATAATGGCCGATCGGTTGTGGTTCGAATTAACGATAGAGGTCCTTTTTTATCAA
ACAGGCTAATTGATTTATCCTTTGCTGCCGCTAAAAAACTCGGTATAAAAGGCATTGCTCCTGTTGAAATTGAAGTCGTT
TGA

Upstream 100 bases:

>100_bases
AAATGTATAATCAATCAAATCAATGATGAAAGCAAATGATAAAAATGTGTTACCTATTGACGATTTTCTTTGCAAGAAAT
ATCTTTGATTCTCGTGATCT

Downstream 100 bases:

>100_bases
AAATGCTAAGAAGTAAAGCTTACTCAAGCTAATAACCTGATTTACCTGGTTAACTTATTAAATAATCTAAAATTAAGAAA
TCGTCCTATTCATCAATGAA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MNYVYLKSVAEVEDNFMNYYSILLTIKRLIIGLLPILLVACTHQQSHGPDHYVVRGKTYHVMKSAKHYKAKGIASWYGSH
ARHQKTSTGERYNMYAMTAAHPTLPIATRVRVKNLNNGRSVVVRINDRGPFLSNRLIDLSFAAAKKLGIKGIAPVEIEVV

Sequences:

>Translated_160_residues
MNYVYLKSVAEVEDNFMNYYSILLTIKRLIIGLLPILLVACTHQQSHGPDHYVVRGKTYHVMKSAKHYKAKGIASWYGSH
ARHQKTSTGERYNMYAMTAAHPTLPIATRVRVKNLNNGRSVVVRINDRGPFLSNRLIDLSFAAAKKLGIKGIAPVEIEVV
>Mature_160_residues
MNYVYLKSVAEVEDNFMNYYSILLTIKRLIIGLLPILLVACTHQQSHGPDHYVVRGKTYHVMKSAKHYKAKGIASWYGSH
ARHQKTSTGERYNMYAMTAAHPTLPIATRVRVKNLNNGRSVVVRINDRGPFLSNRLIDLSFAAAKKLGIKGIAPVEIEVV

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=97, Percent_Identity=43.298969072165, Blast_Score=93, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 18008; Mature: 18008

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYVYLKSVAEVEDNFMNYYSILLTIKRLIIGLLPILLVACTHQQSHGPDHYVVRGKTYH
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEE
VMKSAKHYKAKGIASWYGSHARHQKTSTGERYNMYAMTAAHPTLPIATRVRVKNLNNGRS
EHHHHHHHHHCCHHHHHCCHHHCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCE
VVVRINDRGPFLSNRLIDLSFAAAKKLGIKGIAPVEIEVV
EEEEECCCCCCCCCCEEEHHHHHHHHCCCCCCCCEEEEEC
>Mature Secondary Structure
MNYVYLKSVAEVEDNFMNYYSILLTIKRLIIGLLPILLVACTHQQSHGPDHYVVRGKTYH
CCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEE
VMKSAKHYKAKGIASWYGSHARHQKTSTGERYNMYAMTAAHPTLPIATRVRVKNLNNGRS
EHHHHHHHHHCCHHHHHCCHHHCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEECCCCCE
VVVRINDRGPFLSNRLIDLSFAAAKKLGIKGIAPVEIEVV
EEEEECCCCCCCCCCEEEHHHHHHHHCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]