Click here to switch to the map view.

The map label for this gene is (hspc4-1 [H]

Identifier: 52842701

GI number: 52842701

Start: 2810340

End: 2810834

Strand: Direct

Name: (hspc4-1 [H]

Synonym: lpg2493

Alternate gene names: 52842701

Gene position: 2810340-2810834 (Clockwise)

Preceding gene: 52842700

Following gene: 52842702

Centisome position: 82.71

GC content: 33.33

Gene sequence:

>495_bases
ATGGGCAGCTTAAGAAAACATCAACCAGGTAAAACAACTGATCTTCTGATGAGTCCGTTTTTAAGACTTCAGCAAGAGGT
CAATCATGCTATGAGTGATTTTTATAATTTATTTGACCCTCAAAGAAGTGCCAATCTTGAGCAATTCGAGCATATTTCTC
TTACTCCGTCTTTGGATATCGTTGAAGATAAAGATAATTTCAAAATTGAAGTAGAAATGCCTGGTATGGGTGAAGAAGAT
ATTAAAGTATCTTTTTGTGAAAACAGATTAACCATTGAAGGAGAGAAAACCACTTCTAAAAAAGATGAAAATAAAAATTA
TATCAGTCGTGAAATTAGTTATGGGCGATATGAACGCACCATTTCCTTACCTCTATCTGCGGATGTGGATAAAGCGACTG
CCTCTTTTAAAAAGGGTATGTTATGGATCACAATACCTAAAAAAACTGAAGCCAAGGAAAATGTAAAAACAATTAAAATT
GAAAAAGCAAAATAA

Upstream 100 bases:

>100_bases
ATCTAGCAACTATATTTACATTGATAAGCTGGTGAATATTACTTTCGGTGTTTTTAACAACTAACTGATACGTCAATTTA
TGGAATAAGGAGGTGACATC

Downstream 100 bases:

>100_bases
TTAATTCAGTCAGGGTCAGGCTCCAAAGCGATGGAGTCAGCCCCATTCTTATTTTTTGGCTCTACTTTCCCAAATGGTAG
TTAATAACATAAGAATTATG

Product: small heat shock protein HspC2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MGSLRKHQPGKTTDLLMSPFLRLQQEVNHAMSDFYNLFDPQRSANLEQFEHISLTPSLDIVEDKDNFKIEVEMPGMGEED
IKVSFCENRLTIEGEKTTSKKDENKNYISREISYGRYERTISLPLSADVDKATASFKKGMLWITIPKKTEAKENVKTIKI
EKAK

Sequences:

>Translated_164_residues
MGSLRKHQPGKTTDLLMSPFLRLQQEVNHAMSDFYNLFDPQRSANLEQFEHISLTPSLDIVEDKDNFKIEVEMPGMGEED
IKVSFCENRLTIEGEKTTSKKDENKNYISREISYGRYERTISLPLSADVDKATASFKKGMLWITIPKKTEAKENVKTIKI
EKAK
>Mature_163_residues
GSLRKHQPGKTTDLLMSPFLRLQQEVNHAMSDFYNLFDPQRSANLEQFEHISLTPSLDIVEDKDNFKIEVEMPGMGEEDI
KVSFCENRLTIEGEKTTSKKDENKNYISREISYGRYERTISLPLSADVDKATASFKKGMLWITIPKKTEAKENVKTIKIE
KAK

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 18862; Mature: 18731

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSLRKHQPGKTTDLLMSPFLRLQQEVNHAMSDFYNLFDPQRSANLEQFEHISLTPSLDI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEECCCCCEE
VEDKDNFKIEVEMPGMGEEDIKVSFCENRLTIEGEKTTSKKDENKNYISREISYGRYERT
EECCCCEEEEEEECCCCCCCEEEEEECCEEEEECCCCCCCCCCCCHHHHHHCCCCCEEEE
ISLPLSADVDKATASFKKGMLWITIPKKTEAKENVKTIKIEKAK
EECCCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
GSLRKHQPGKTTDLLMSPFLRLQQEVNHAMSDFYNLFDPQRSANLEQFEHISLTPSLDI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHEEECCCCCEE
VEDKDNFKIEVEMPGMGEEDIKVSFCENRLTIEGEKTTSKKDENKNYISREISYGRYERT
EECCCCEEEEEEECCCCCCCEEEEEECCEEEEECCCCCCCCCCCCHHHHHHCCCCCEEEE
ISLPLSADVDKATASFKKGMLWITIPKKTEAKENVKTIKIEKAK
EECCCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA